Wall clock time and date at job start Tue Mar 31 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46787 * 2 1 4 4 H 1.08999 * 109.47386 * 55.00273 * 3 2 1 5 5 C 1.53006 * 109.46853 * 174.99783 * 3 2 1 6 6 O 1.42896 * 109.47582 * 294.99616 * 3 2 1 7 7 C 1.35951 * 117.00438 * 155.33974 * 6 3 2 8 8 C 1.38747 * 119.98376 * 185.23829 * 7 6 3 9 9 C 1.38052 * 120.02434 * 180.27504 * 8 7 6 10 10 C 1.38919 * 119.97784 * 0.02563 * 9 8 7 11 11 N 1.39872 * 120.02291 * 179.97438 * 10 9 8 12 12 C 1.34767 * 120.00282 * 213.87043 * 11 10 9 13 13 O 1.21387 * 120.00054 * 5.71100 * 12 11 10 14 14 C 1.49341 * 120.00034 * 185.71154 * 12 11 10 15 15 O 1.21359 * 119.99904 * 359.97438 * 14 12 11 16 16 N 1.34775 * 119.99914 * 180.02562 * 14 12 11 17 17 C 1.46497 * 119.99959 * 179.97438 * 16 14 12 18 18 H 1.08991 * 109.47170 * 34.99477 * 17 16 14 19 19 C 1.53005 * 109.46899 * 274.99640 * 17 16 14 20 20 C 1.50699 * 109.47252 * 155.00085 * 17 16 14 21 21 H 1.07997 * 120.00082 * 359.97438 * 20 17 16 22 22 C 1.37878 * 119.99901 * 180.02562 * 20 17 16 23 23 N 1.31511 * 120.00130 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 119.99824 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47248 * 59.99840 * 24 22 20 26 26 H 1.48500 * 109.47040 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47006 * 299.99511 * 24 22 20 28 28 C 1.38923 * 119.95867 * 359.97438 * 10 9 8 29 29 C 1.38057 * 119.98167 * 0.02562 * 28 10 9 30 30 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47314 * 299.99832 * 1 2 3 32 32 H 1.08999 * 109.47136 * 59.99829 * 1 2 3 33 33 H 1.08998 * 109.47314 * 240.00168 * 2 1 3 34 34 H 1.09004 * 109.47026 * 119.99693 * 2 1 3 35 35 H 1.08999 * 109.46725 * 60.00085 * 5 3 2 36 36 H 1.08999 * 109.47160 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.47039 * 300.00182 * 5 3 2 38 38 H 1.08003 * 119.98732 * 0.25927 * 8 7 6 39 39 H 1.07997 * 120.01670 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99153 * 33.86940 * 11 10 9 41 41 H 0.97004 * 120.00455 * 359.97438 * 16 14 12 42 42 H 1.08997 * 109.46868 * 179.97438 * 19 17 16 43 43 H 1.09000 * 109.47225 * 299.99700 * 19 17 16 44 44 H 1.08992 * 109.47025 * 59.99790 * 19 17 16 45 45 H 0.97005 * 119.99935 * 179.97438 * 23 22 20 46 46 H 1.07998 * 120.00566 * 179.97438 * 28 10 9 47 47 H 1.07995 * 119.99180 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.5590 3.4369 -1.2023 8 6 1.0917 4.1123 -2.3206 9 6 0.9921 5.4891 -2.3044 10 6 1.3604 6.1985 -1.1682 11 7 1.2604 7.5935 -1.1510 12 6 2.1571 8.3250 -0.4603 13 8 3.1102 7.7829 0.0607 14 6 1.9783 9.8024 -0.3358 15 8 1.0257 10.3444 -0.8570 16 7 2.8754 10.5339 0.3546 17 6 2.7002 11.9833 0.4762 18 1 1.6376 12.2167 0.5411 19 6 3.3002 12.6742 -0.7501 20 6 3.3986 12.4711 1.7193 21 1 3.9204 11.7714 2.3554 22 6 3.3706 13.8105 2.0452 23 7 2.7349 14.6625 1.2709 24 14 4.2357 14.4150 3.5865 25 1 5.6836 14.0975 3.4983 26 1 4.0583 15.8842 3.7098 27 1 3.6533 13.7441 4.7765 28 6 1.8282 5.5214 -0.0490 29 6 1.9271 4.1445 -0.0669 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9994 0.9053 -0.7160 36 1 3.9282 2.4720 0.1253 37 1 3.8531 0.9570 1.0572 38 1 0.8061 3.5607 -3.2041 39 1 0.6288 6.0148 -3.1751 40 1 0.5456 8.0344 -1.6363 41 1 3.6370 10.1008 0.7709 42 1 3.1695 13.7525 -0.6598 43 1 4.3629 12.4408 -0.8150 44 1 2.7951 12.3214 -1.6492 45 1 2.7149 15.6048 1.5004 46 1 2.1151 6.0721 0.8346 47 1 2.2903 3.6179 0.8032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123185811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:27 Heat of formation + Delta-G solvation = -90.886333 kcal Electronic energy + Delta-G solvation = -27871.088524 eV Core-core repulsion = 23826.119574 eV Total energy + Delta-G solvation = -4044.968950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94255 -40.15438 -38.59182 -37.49903 -35.35611 -34.78245 -33.88356 -32.42517 -31.35404 -30.24515 -29.33924 -28.81218 -25.37265 -24.92757 -24.16819 -23.53455 -22.37906 -20.97057 -20.72177 -19.62911 -18.72899 -18.50698 -17.38844 -16.55745 -16.06243 -15.73385 -15.63988 -15.25741 -15.10775 -15.03062 -14.51334 -14.28342 -14.10373 -13.78737 -13.70561 -13.52613 -13.29927 -13.13516 -12.74115 -12.69729 -12.49686 -12.20761 -12.13377 -11.82201 -11.50782 -11.48101 -11.25556 -11.13844 -11.10216 -11.01440 -10.84693 -10.79087 -10.39117 -10.29052 -9.99526 -9.23495 -9.16830 -9.05122 -8.64052 -8.15799 -7.84068 -6.18843 -4.28615 1.05697 1.18910 1.90107 2.67665 2.94817 3.24202 3.29042 3.31215 3.51778 3.76157 4.07487 4.26126 4.32274 4.47803 4.58747 4.68967 4.71964 4.87390 5.02185 5.06879 5.11370 5.14206 5.17307 5.19777 5.31394 5.36115 5.50237 5.53279 5.62452 5.74768 5.78050 5.87304 5.88496 6.15831 6.21482 6.27286 6.64812 6.70411 6.82924 7.00161 7.09262 7.20477 7.24222 7.39564 7.60004 7.76197 7.91610 8.03320 8.41700 8.58956 8.82938 9.38352 10.87115 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.001997 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.972355 B =14015.050720 C =14813.966364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.080 3.920 4 H 0.074 0.926 5 C -0.183 4.183 6 O -0.309 6.309 7 C 0.115 3.885 8 C -0.134 4.134 9 C -0.103 4.103 10 C 0.112 3.888 11 N -0.649 5.649 12 C 0.507 3.493 13 O -0.508 6.508 14 C 0.495 3.505 15 O -0.535 6.535 16 N -0.668 5.668 17 C 0.261 3.739 18 H 0.054 0.946 19 C -0.148 4.148 20 C -0.537 4.537 21 H 0.064 0.936 22 C 0.068 3.932 23 N -0.883 5.883 24 Si 0.905 3.095 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 C -0.079 4.079 29 C -0.189 4.189 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.422 0.578 41 H 0.402 0.598 42 H 0.094 0.906 43 H 0.030 0.970 44 H 0.016 0.984 45 H 0.266 0.734 46 H 0.138 0.862 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 -26.423 -4.474 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.024 3.976 4 H 0.092 0.908 5 C -0.240 4.240 6 O -0.223 6.223 7 C 0.070 3.930 8 C -0.153 4.153 9 C -0.123 4.123 10 C 0.018 3.982 11 N -0.297 5.297 12 C 0.290 3.710 13 O -0.381 6.381 14 C 0.273 3.727 15 O -0.414 6.414 16 N -0.316 5.316 17 C 0.161 3.839 18 H 0.072 0.928 19 C -0.207 4.207 20 C -0.576 4.576 21 H 0.082 0.918 22 C -0.136 4.136 23 N -0.520 5.520 24 Si 0.732 3.268 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.099 4.099 29 C -0.208 4.208 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.260 0.740 41 H 0.237 0.763 42 H 0.113 0.887 43 H 0.049 0.951 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.156 0.844 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.191 -26.234 -4.591 26.823 hybrid contribution 0.621 0.481 0.969 1.248 sum -2.570 -25.753 -3.621 26.133 Atomic orbital electron populations 1.21766 0.95083 1.01840 1.02479 1.21630 0.96876 0.93907 1.03158 1.22502 0.95082 0.93902 0.86132 0.90814 1.22404 0.95205 1.03468 1.02945 1.86096 1.84027 1.16635 1.35538 1.18956 0.96896 0.82536 0.94643 1.20158 1.04315 0.93053 0.97776 1.20737 1.01773 0.93354 0.96421 1.17670 1.03579 0.82397 0.94541 1.43202 1.31106 1.04323 1.51058 1.20948 0.82006 0.89377 0.78669 1.90736 1.29179 1.73164 1.45050 1.19672 0.84752 0.86244 0.82042 1.90729 1.30846 1.72265 1.47584 1.46505 1.25065 1.11090 1.48988 1.18983 0.98570 0.71769 0.94616 0.92771 1.22098 0.98115 1.04578 0.95906 1.21146 1.35240 0.93506 1.07664 0.91805 1.24879 0.95116 0.96398 0.97208 1.69880 1.41432 1.03382 1.37311 0.86445 0.79960 0.77634 0.82718 1.20052 1.21081 1.20093 1.20988 0.97949 0.93393 0.97588 1.21156 1.06599 0.94467 0.98628 0.92485 0.92765 0.91900 0.90800 0.90101 0.91420 0.91505 0.91011 0.84851 0.84741 0.73986 0.76330 0.88708 0.95086 0.96459 0.92378 0.84433 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.81 37.16 0.36 -0.58 16 2 C -0.12 -0.70 5.64 -26.73 -0.15 -0.85 16 3 C 0.08 0.60 2.23 -26.73 -0.06 0.54 16 4 H 0.07 0.54 6.33 -51.93 -0.33 0.21 16 5 C -0.18 -1.27 9.16 37.16 0.34 -0.93 16 6 O -0.31 -3.07 9.34 -19.59 -0.18 -3.25 16 7 C 0.12 1.25 6.60 -39.20 -0.26 0.99 16 8 C -0.13 -1.37 9.98 -39.46 -0.39 -1.77 16 9 C -0.10 -1.09 9.96 -39.40 -0.39 -1.48 16 10 C 0.11 1.45 6.27 -83.68 -0.52 0.92 16 11 N -0.65 -9.01 5.32 -10.27 -0.05 -9.06 16 12 C 0.51 8.60 7.61 -11.64 -0.09 8.51 16 13 O -0.51 -9.21 14.22 5.46 0.08 -9.13 16 14 C 0.49 9.84 7.85 -11.64 -0.09 9.75 16 15 O -0.54 -11.73 16.15 5.49 0.09 -11.64 16 16 N -0.67 -14.22 5.06 -55.40 -0.28 -14.50 16 17 C 0.26 6.53 2.56 -69.08 -0.18 6.36 16 18 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 19 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 20 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 22 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 23 N -0.88 -24.29 11.32 55.43 0.63 -23.67 16 24 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 C -0.08 -1.04 8.65 -39.39 -0.34 -1.38 16 29 C -0.19 -2.12 8.22 -39.46 -0.32 -2.44 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.55 6.87 -51.93 -0.36 0.19 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.42 5.17 8.30 -40.82 -0.34 4.83 16 41 H 0.40 7.99 8.01 -40.82 -0.33 7.66 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.14 1.97 6.46 -52.49 -0.34 1.63 16 47 H 0.13 1.24 5.41 -52.49 -0.28 0.96 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -29.87 390.24 -7.87 -37.74 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.86 Total: 10.50 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.15 Total: 1.69 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.29 Total: -47.23 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.02 Total: -24.02 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.87 -7.87 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123185811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.142 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds