Wall clock time and date at job start Tue Mar 31 2020 18:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46787 * 2 1 4 4 H 1.08999 * 109.47386 * 55.00273 * 3 2 1 5 5 C 1.53006 * 109.46853 * 174.99783 * 3 2 1 6 6 O 1.42896 * 109.47582 * 294.99616 * 3 2 1 7 7 C 1.35951 * 117.00438 * 155.33974 * 6 3 2 8 8 C 1.38747 * 119.98376 * 185.23829 * 7 6 3 9 9 C 1.38052 * 120.02434 * 180.27504 * 8 7 6 10 10 C 1.38919 * 119.97784 * 0.02563 * 9 8 7 11 11 N 1.39872 * 120.02291 * 179.97438 * 10 9 8 12 12 C 1.34767 * 120.00282 * 213.87043 * 11 10 9 13 13 O 1.21387 * 120.00054 * 5.71100 * 12 11 10 14 14 C 1.49341 * 120.00034 * 185.71154 * 12 11 10 15 15 O 1.21359 * 119.99904 * 359.97438 * 14 12 11 16 16 N 1.34775 * 119.99914 * 180.02562 * 14 12 11 17 17 C 1.46497 * 119.99959 * 179.97438 * 16 14 12 18 18 H 1.08991 * 109.47170 * 34.99477 * 17 16 14 19 19 C 1.53005 * 109.46899 * 274.99640 * 17 16 14 20 20 C 1.50699 * 109.47252 * 155.00085 * 17 16 14 21 21 H 1.07997 * 120.00082 * 359.97438 * 20 17 16 22 22 C 1.37878 * 119.99901 * 180.02562 * 20 17 16 23 23 N 1.31511 * 120.00130 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 119.99824 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47248 * 59.99840 * 24 22 20 26 26 H 1.48500 * 109.47040 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47006 * 299.99511 * 24 22 20 28 28 C 1.38923 * 119.95867 * 359.97438 * 10 9 8 29 29 C 1.38057 * 119.98167 * 0.02562 * 28 10 9 30 30 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47314 * 299.99832 * 1 2 3 32 32 H 1.08999 * 109.47136 * 59.99829 * 1 2 3 33 33 H 1.08998 * 109.47314 * 240.00168 * 2 1 3 34 34 H 1.09004 * 109.47026 * 119.99693 * 2 1 3 35 35 H 1.08999 * 109.46725 * 60.00085 * 5 3 2 36 36 H 1.08999 * 109.47160 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.47039 * 300.00182 * 5 3 2 38 38 H 1.08003 * 119.98732 * 0.25927 * 8 7 6 39 39 H 1.07997 * 120.01670 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99153 * 33.86940 * 11 10 9 41 41 H 0.97004 * 120.00455 * 359.97438 * 16 14 12 42 42 H 1.08997 * 109.46868 * 179.97438 * 19 17 16 43 43 H 1.09000 * 109.47225 * 299.99700 * 19 17 16 44 44 H 1.08992 * 109.47025 * 59.99790 * 19 17 16 45 45 H 0.97005 * 119.99935 * 179.97438 * 23 22 20 46 46 H 1.07998 * 120.00566 * 179.97438 * 28 10 9 47 47 H 1.07995 * 119.99180 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.5590 3.4369 -1.2023 8 6 1.0917 4.1123 -2.3206 9 6 0.9921 5.4891 -2.3044 10 6 1.3604 6.1985 -1.1682 11 7 1.2604 7.5935 -1.1510 12 6 2.1571 8.3250 -0.4603 13 8 3.1102 7.7829 0.0607 14 6 1.9783 9.8024 -0.3358 15 8 1.0257 10.3444 -0.8570 16 7 2.8754 10.5339 0.3546 17 6 2.7002 11.9833 0.4762 18 1 1.6376 12.2167 0.5411 19 6 3.3002 12.6742 -0.7501 20 6 3.3986 12.4711 1.7193 21 1 3.9204 11.7714 2.3554 22 6 3.3706 13.8105 2.0452 23 7 2.7349 14.6625 1.2709 24 14 4.2357 14.4150 3.5865 25 1 5.6836 14.0975 3.4983 26 1 4.0583 15.8842 3.7098 27 1 3.6533 13.7441 4.7765 28 6 1.8282 5.5214 -0.0490 29 6 1.9271 4.1445 -0.0669 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9994 0.9053 -0.7160 36 1 3.9282 2.4720 0.1253 37 1 3.8531 0.9570 1.0572 38 1 0.8061 3.5607 -3.2041 39 1 0.6288 6.0148 -3.1751 40 1 0.5456 8.0344 -1.6363 41 1 3.6370 10.1008 0.7709 42 1 3.1695 13.7525 -0.6598 43 1 4.3629 12.4408 -0.8150 44 1 2.7951 12.3214 -1.6492 45 1 2.7149 15.6048 1.5004 46 1 2.1151 6.0721 0.8346 47 1 2.2903 3.6179 0.8032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123185811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:26 Heat of formation + Delta-G solvation = -109.436866 kcal Electronic energy + Delta-G solvation = -27871.892936 eV Core-core repulsion = 23826.119574 eV Total energy + Delta-G solvation = -4045.773362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.12537 -41.17071 -39.96749 -38.59849 -37.02786 -35.88731 -34.75630 -34.30583 -32.18246 -31.13508 -30.82387 -29.91107 -27.38528 -26.26378 -24.86264 -24.37078 -23.51065 -22.30643 -21.63946 -21.22904 -20.10915 -19.35375 -18.58141 -18.14970 -17.39870 -17.26204 -16.88176 -16.57979 -16.22885 -15.96530 -15.76171 -15.26826 -15.19536 -14.95423 -14.79997 -14.45357 -14.34986 -14.26969 -13.98568 -13.78347 -13.61074 -13.49734 -13.08458 -12.91963 -12.86969 -12.81124 -12.69971 -12.65862 -12.30206 -12.17500 -12.12749 -11.98487 -11.75239 -11.48577 -11.18048 -11.00626 -10.68571 -10.59928 -10.04052 -9.99722 -8.78705 -8.20568 -6.37963 -0.03853 0.30235 0.62005 1.31768 1.46369 1.47160 1.55498 2.11784 2.23991 2.38849 2.73889 2.74977 3.10101 3.46332 3.70731 3.82388 3.85635 3.98262 4.09008 4.17772 4.35272 4.42425 4.44874 4.57860 4.68192 4.69108 4.70056 4.85506 4.87940 4.96791 5.00715 5.01456 5.09703 5.19278 5.20988 5.24136 5.29519 5.30664 5.31479 5.42786 5.43269 5.58519 5.70357 5.77360 6.02000 6.02768 6.44801 6.54450 6.63934 6.78097 7.05511 7.34087 8.85304 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.001997 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.972355 B =14015.050720 C =14813.966364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.076 0.924 5 C -0.181 4.181 6 O -0.314 6.314 7 C 0.117 3.883 8 C -0.135 4.135 9 C -0.091 4.091 10 C 0.085 3.915 11 N -0.631 5.631 12 C 0.516 3.484 13 O -0.522 6.522 14 C 0.496 3.504 15 O -0.557 6.557 16 N -0.670 5.670 17 C 0.267 3.733 18 H 0.016 0.984 19 C -0.136 4.136 20 C -0.553 4.553 21 H 0.070 0.930 22 C 0.019 3.981 23 N -0.912 5.912 24 Si 0.972 3.028 25 H -0.267 1.267 26 H -0.283 1.283 27 H -0.272 1.272 28 C -0.094 4.094 29 C -0.192 4.192 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.430 0.570 41 H 0.410 0.590 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.021 0.979 45 H 0.268 0.732 46 H 0.121 0.879 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 -28.627 -4.412 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.017 3.983 4 H 0.093 0.907 5 C -0.238 4.238 6 O -0.229 6.229 7 C 0.071 3.929 8 C -0.154 4.154 9 C -0.111 4.111 10 C -0.008 4.008 11 N -0.279 5.279 12 C 0.298 3.702 13 O -0.397 6.397 14 C 0.276 3.724 15 O -0.437 6.437 16 N -0.320 5.320 17 C 0.165 3.835 18 H 0.033 0.967 19 C -0.195 4.195 20 C -0.591 4.591 21 H 0.088 0.912 22 C -0.181 4.181 23 N -0.549 5.549 24 Si 0.797 3.203 25 H -0.191 1.191 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.114 4.114 29 C -0.211 4.211 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.174 0.826 39 H 0.178 0.822 40 H 0.269 0.731 41 H 0.246 0.754 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.138 0.862 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.785 -28.492 -4.548 28.986 hybrid contribution 0.418 1.003 0.901 1.411 sum -2.368 -27.489 -3.647 27.831 Atomic orbital electron populations 1.21766 0.95314 1.02376 1.01738 1.21658 0.96623 0.92809 1.04133 1.22752 0.95569 0.94690 0.85314 0.90654 1.22393 0.94669 1.02745 1.03980 1.86107 1.83837 1.16006 1.36911 1.19141 0.96036 0.83123 0.94591 1.20479 1.03557 0.93015 0.98361 1.20985 1.00303 0.93531 0.96260 1.17860 1.05691 0.81523 0.95713 1.43020 1.30221 1.04882 1.49746 1.20193 0.82631 0.87772 0.79577 1.90737 1.29970 1.72824 1.46167 1.20135 0.83771 0.87690 0.80843 1.90710 1.31541 1.73260 1.48195 1.46265 1.25934 1.09938 1.49822 1.18632 0.96140 0.73896 0.94826 0.96651 1.21925 0.98605 1.03125 0.95823 1.21448 1.35409 0.94018 1.08247 0.91184 1.25733 0.95692 0.96556 1.00161 1.70010 1.42411 1.03640 1.38884 0.85395 0.79075 0.76985 0.78878 1.19143 1.20834 1.19674 1.20963 0.98881 0.94231 0.97355 1.21252 1.06563 0.93770 0.99492 0.91359 0.92817 0.93305 0.90771 0.88147 0.91450 0.92964 0.89122 0.82603 0.82209 0.73085 0.75431 0.90763 0.94175 0.96032 0.92293 0.86154 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 71.98 0.71 -0.93 16 2 C -0.12 -1.11 5.64 30.60 0.17 -0.94 16 3 C 0.07 0.97 2.23 30.60 0.07 1.03 16 4 H 0.08 0.99 6.33 -2.39 -0.02 0.97 16 5 C -0.18 -2.21 9.16 71.98 0.66 -1.55 16 6 O -0.31 -5.70 9.34 -92.99 -0.87 -6.57 16 7 C 0.12 2.35 6.60 22.51 0.15 2.50 16 8 C -0.14 -2.46 9.98 22.35 0.22 -2.23 16 9 C -0.09 -1.74 9.96 22.39 0.22 -1.51 16 10 C 0.09 2.12 6.27 38.19 0.24 2.36 16 11 N -0.63 -17.15 5.32 -304.75 -1.62 -18.77 16 12 C 0.52 17.51 7.61 87.24 0.66 18.17 16 13 O -0.52 -18.96 14.22 -3.36 -0.05 -19.01 16 14 C 0.50 19.99 7.85 87.24 0.68 20.68 16 15 O -0.56 -24.83 16.15 -3.27 -0.05 -24.88 16 16 N -0.67 -29.00 5.06 -447.56 -2.27 -31.26 16 17 C 0.27 13.68 2.56 44.25 0.11 13.79 16 18 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 19 C -0.14 -6.72 9.26 71.98 0.67 -6.05 16 20 C -0.55 -29.24 8.73 25.60 0.22 -29.02 16 21 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 22 C 0.02 1.03 5.30 84.66 0.45 1.48 16 23 N -0.91 -50.92 11.32 21.45 0.24 -50.68 16 24 Si 0.97 41.76 29.54 68.60 2.03 43.78 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 28 C -0.09 -2.45 8.65 22.39 0.19 -2.25 16 29 C -0.19 -4.13 8.22 22.35 0.18 -3.94 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.65 7.82 -2.39 -0.02 0.63 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.80 6.87 -2.39 -0.02 0.78 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.43 10.19 8.30 -92.71 -0.77 9.42 16 41 H 0.41 16.41 8.01 -92.71 -0.74 15.67 16 42 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 46 H 0.12 3.52 6.46 -2.91 -0.02 3.50 16 47 H 0.14 2.61 5.41 -2.91 -0.02 2.59 16 Total: -1.00 -64.34 390.24 2.53 -61.82 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.50 Total: 33.99 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.62 Total: 11.58 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -3.65 Total: -100.72 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.97 Total: -50.46 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -64.34 2.53 -61.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123185811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.619 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds