Wall clock time and date at job start Tue Mar 31 2020 18:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47401 * 2 1 4 4 C 1.42894 * 114.00756 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47857 * 180.02562 * 4 3 2 6 6 C 1.38312 * 119.96296 * 269.98272 * 5 4 3 7 7 C 1.38270 * 120.15308 * 179.97438 * 6 5 4 8 8 C 1.38121 * 120.07607 * 359.73697 * 7 6 5 9 9 C 1.38907 * 119.92024 * 0.53613 * 8 7 6 10 10 N 1.39725 * 120.07134 * 179.74631 * 9 8 7 11 11 C 1.34766 * 120.00353 * 324.67103 * 10 9 8 12 12 O 1.21383 * 119.99859 * 4.42867 * 11 10 9 13 13 C 1.49360 * 120.00281 * 184.43184 * 11 10 9 14 14 O 1.21356 * 119.99424 * 0.02562 * 13 11 10 15 15 N 1.34773 * 119.99769 * 179.97438 * 13 11 10 16 16 C 1.46504 * 119.99515 * 179.97438 * 15 13 11 17 17 H 1.08995 * 109.47161 * 325.00235 * 16 15 13 18 18 C 1.50699 * 109.47238 * 205.00170 * 16 15 13 19 19 H 1.08000 * 119.99530 * 326.81933 * 18 16 15 20 20 C 1.37874 * 120.00322 * 146.81644 * 18 16 15 21 21 N 1.31512 * 120.00077 * 180.85026 * 20 18 16 22 22 Si 1.86797 * 119.99719 * 0.85694 * 20 18 16 23 23 H 1.48506 * 109.47229 * 265.65773 * 22 20 18 24 24 H 1.48495 * 109.47602 * 25.65831 * 22 20 18 25 25 H 1.48504 * 109.47238 * 145.65929 * 22 20 18 26 26 C 1.53006 * 109.46966 * 85.00227 * 16 15 13 27 27 C 1.53000 * 109.46970 * 296.53372 * 26 16 15 28 28 C 1.38078 * 119.95957 * 89.99754 * 5 4 3 29 29 H 1.08998 * 109.46848 * 299.99841 * 1 2 3 30 30 H 1.08997 * 109.47133 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.46823 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47139 * 240.00588 * 2 1 3 33 33 H 1.08999 * 109.47616 * 120.00224 * 2 1 3 34 34 H 1.08996 * 109.47176 * 59.99741 * 4 3 2 35 35 H 1.09003 * 109.46799 * 300.00486 * 4 3 2 36 36 H 1.08003 * 119.92459 * 359.96704 * 6 5 4 37 37 H 1.08007 * 119.96352 * 180.02562 * 7 6 5 38 38 H 1.07998 * 120.03917 * 180.28084 * 8 7 6 39 39 H 0.97008 * 119.99195 * 144.67215 * 10 9 8 40 40 H 0.96995 * 120.00680 * 0.02562 * 15 13 11 41 41 H 0.97003 * 119.99560 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47026 * 56.53466 * 26 16 15 43 43 H 1.08992 * 109.46973 * 176.53586 * 26 16 15 44 44 H 1.09000 * 109.46926 * 179.97438 * 27 26 16 45 45 H 1.08998 * 109.47322 * 299.99912 * 27 26 16 46 46 H 1.09006 * 109.46955 * 60.00177 * 27 26 16 47 47 H 1.07995 * 120.04158 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8195 2.9162 0.0001 6 6 3.9974 3.5842 -1.1978 7 6 4.3535 4.9203 -1.2018 8 6 4.5274 5.5938 -0.0085 9 6 4.3551 4.9245 1.1964 10 7 4.5354 5.6014 2.4053 11 6 5.4829 6.5541 2.5094 12 8 6.1250 6.8807 1.5325 13 6 5.7429 7.2081 3.8268 14 8 5.1012 6.8811 4.8036 15 7 6.6908 8.1605 3.9309 16 6 6.9454 8.8023 5.2231 17 1 6.0082 8.9005 5.7709 18 6 7.5405 10.1682 4.9969 19 1 8.1885 10.3414 4.1504 20 6 7.2578 11.1967 5.8705 21 7 7.7638 12.3928 5.6638 22 14 6.1563 10.8909 7.3478 23 1 4.7571 11.2522 7.0053 24 1 6.2190 9.4557 7.7237 25 1 6.6168 11.7220 8.4891 26 6 7.9226 7.9479 6.0331 27 6 7.2834 6.5914 6.3367 28 6 3.9978 3.5817 1.1967 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8333 0.9768 -0.8907 35 1 3.8340 0.9764 0.8892 36 1 3.8581 3.0610 -2.1324 37 1 4.4913 5.4390 -2.1391 38 1 4.8011 6.6385 -0.0123 39 1 3.9785 5.3855 3.1697 40 1 7.2039 8.4215 3.1503 41 1 7.5651 13.1163 6.2787 42 1 8.8368 7.7984 5.4588 43 1 8.1598 8.4552 6.9682 44 1 7.9797 5.9826 6.9134 45 1 6.3691 6.7409 6.9111 46 1 7.0461 6.0841 5.4015 47 1 3.8594 3.0593 2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128082261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:05 Heat of formation + Delta-G solvation = -94.115528 kcal Electronic energy + Delta-G solvation = -28030.463505 eV Core-core repulsion = 23985.354526 eV Total energy + Delta-G solvation = -4045.108979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91592 -39.54166 -38.50255 -37.75233 -35.66175 -34.83306 -32.62136 -32.42989 -31.53502 -30.92783 -29.97564 -27.81117 -26.24828 -25.00215 -23.16070 -22.89639 -22.51076 -21.71397 -20.12757 -19.69497 -18.72614 -17.37375 -16.95766 -16.91962 -16.53603 -16.43008 -15.90799 -15.66728 -15.34730 -15.00008 -14.81605 -14.26806 -14.07284 -13.77881 -13.55782 -13.42737 -13.22953 -12.87596 -12.73696 -12.68922 -12.37515 -12.01106 -11.99793 -11.93188 -11.78668 -11.58654 -11.40149 -11.21187 -11.02042 -10.79567 -10.75037 -10.41802 -10.06639 -9.99444 -9.90728 -9.28753 -9.22314 -9.01620 -8.82208 -8.32751 -8.24331 -6.29606 -4.34592 0.99536 1.12297 1.80214 2.58407 3.19946 3.23687 3.29534 3.35011 3.56540 3.81765 3.98079 4.25681 4.50518 4.58387 4.66250 4.82863 4.83517 4.89162 4.96375 4.99332 5.06324 5.13917 5.20986 5.31022 5.35609 5.48517 5.52626 5.72544 5.76256 5.94062 5.97041 6.10970 6.12205 6.16360 6.33312 6.37648 6.49753 6.65579 6.78289 6.79427 6.83779 6.85635 7.01840 7.16949 7.21159 7.36638 7.73617 8.01709 8.38189 8.55187 8.73556 9.30078 10.81693 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.002193 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.423657 B =12765.302498 C =13342.277070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.382 6.382 4 C 0.106 3.894 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.104 4.104 8 C -0.112 4.112 9 C 0.144 3.856 10 N -0.652 5.652 11 C 0.507 3.493 12 O -0.503 6.503 13 C 0.495 3.505 14 O -0.534 6.534 15 N -0.661 5.661 16 C 0.235 3.765 17 H 0.056 0.944 18 C -0.534 4.534 19 H 0.082 0.918 20 C 0.083 3.917 21 N -0.884 5.884 22 Si 0.871 3.129 23 H -0.274 1.274 24 H -0.255 1.255 25 H -0.283 1.283 26 C -0.127 4.127 27 C -0.146 4.146 28 C -0.121 4.121 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.142 0.858 39 H 0.423 0.577 40 H 0.406 0.594 41 H 0.269 0.731 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 -22.968 -11.520 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.302 6.302 4 C 0.030 3.970 5 C -0.078 4.078 6 C -0.132 4.132 7 C -0.122 4.122 8 C -0.132 4.132 9 C 0.050 3.950 10 N -0.298 5.298 11 C 0.290 3.710 12 O -0.376 6.376 13 C 0.274 3.726 14 O -0.413 6.413 15 N -0.310 5.310 16 C 0.133 3.867 17 H 0.074 0.926 18 C -0.572 4.572 19 H 0.100 0.900 20 C -0.123 4.123 21 N -0.519 5.519 22 Si 0.697 3.303 23 H -0.200 1.200 24 H -0.179 1.179 25 H -0.209 1.209 26 C -0.166 4.166 27 C -0.203 4.203 28 C -0.141 4.141 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.160 0.840 39 H 0.261 0.739 40 H 0.242 0.758 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.079 -22.522 -11.363 27.165 hybrid contribution -0.359 -0.216 0.785 0.890 sum -10.437 -22.738 -10.578 27.163 Atomic orbital electron populations 1.21744 0.93654 1.02213 1.03299 1.22479 0.95719 0.83818 1.00068 1.87992 1.20475 1.26350 1.95414 1.21269 0.81798 0.92958 1.00967 1.19263 1.00877 0.94730 0.92929 1.21013 1.00152 0.94761 0.97308 1.21053 0.98960 0.94311 0.97907 1.21420 0.99601 1.01405 0.90785 1.17725 1.00562 0.91010 0.85681 1.43215 1.36038 1.37242 1.13351 1.20946 0.79585 0.79938 0.90523 1.90738 1.47537 1.60730 1.38586 1.19700 0.83014 0.82386 0.87550 1.90732 1.49333 1.63358 1.37876 1.46580 1.34510 1.34893 1.15066 1.19379 0.95903 0.91579 0.79840 0.92617 1.20976 1.30795 0.91591 1.13821 0.90021 1.24926 0.95121 0.94529 0.97685 1.69879 1.43655 1.01156 1.37244 0.86932 0.81222 0.79498 0.82648 1.19963 1.17869 1.20902 1.22115 0.99292 0.94761 1.00466 1.21918 1.00044 0.97722 1.00644 1.20785 1.02847 0.92051 0.98430 0.91746 0.91817 0.91113 0.93406 0.93349 0.92293 0.92376 0.85920 0.85344 0.83989 0.73926 0.75819 0.92118 0.92593 0.91642 0.94735 0.92767 0.93683 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.37 6.66 37.16 0.25 0.62 16 3 O -0.38 -3.68 10.33 -35.23 -0.36 -4.04 16 4 C 0.11 0.88 6.06 36.00 0.22 1.10 16 5 C -0.08 -0.79 5.51 -104.65 -0.58 -1.37 16 6 C -0.11 -1.12 9.70 -39.54 -0.38 -1.50 16 7 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 8 C -0.11 -1.46 8.69 -39.38 -0.34 -1.80 16 9 C 0.14 1.87 6.29 -83.75 -0.53 1.34 16 10 N -0.65 -8.86 5.32 -10.29 -0.05 -8.91 16 11 C 0.51 8.31 7.73 -11.63 -0.09 8.22 16 12 O -0.50 -8.90 13.93 5.47 0.08 -8.83 16 13 C 0.49 9.23 6.39 -11.63 -0.07 9.16 16 14 O -0.53 -10.62 13.61 5.49 0.07 -10.54 16 15 N -0.66 -13.33 5.00 -55.39 -0.28 -13.61 16 16 C 0.23 5.35 1.79 -69.08 -0.12 5.23 16 17 H 0.06 1.36 4.93 -51.93 -0.26 1.11 16 18 C -0.53 -14.02 9.05 -34.44 -0.31 -14.33 16 19 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 20 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 21 N -0.88 -25.55 13.96 55.43 0.77 -24.78 16 22 Si 0.87 20.66 26.61 -169.99 -4.52 16.13 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.25 -5.82 6.21 56.52 0.35 -5.47 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.13 -2.65 5.34 -26.73 -0.14 -2.79 16 27 C -0.15 -2.74 8.48 37.16 0.32 -2.42 16 28 C -0.12 -1.34 9.62 -39.38 -0.38 -1.72 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.14 2.03 6.25 -52.49 -0.33 1.70 16 39 H 0.42 5.08 8.30 -40.82 -0.34 4.74 16 40 H 0.41 7.85 8.06 -40.82 -0.33 7.52 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 1.39 7.40 -51.93 -0.38 1.01 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 1.06 7.75 -51.93 -0.40 0.66 16 46 H 0.04 0.83 5.68 -51.93 -0.29 0.54 16 47 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -30.56 388.35 -7.73 -38.29 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.01 Total: 10.56 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.28 Total: -0.13 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.44 Total: -47.30 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.21 Total: -23.41 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.52 Total: 16.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.56 -7.73 -38.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128082261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.825 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds