Wall clock time and date at job start Tue Mar 31 2020 18:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47401 * 2 1 4 4 C 1.42894 * 114.00756 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47857 * 180.02562 * 4 3 2 6 6 C 1.38312 * 119.96296 * 269.98272 * 5 4 3 7 7 C 1.38270 * 120.15308 * 179.97438 * 6 5 4 8 8 C 1.38121 * 120.07607 * 359.73697 * 7 6 5 9 9 C 1.38907 * 119.92024 * 0.53613 * 8 7 6 10 10 N 1.39725 * 120.07134 * 179.74631 * 9 8 7 11 11 C 1.34766 * 120.00353 * 324.67103 * 10 9 8 12 12 O 1.21383 * 119.99859 * 4.42867 * 11 10 9 13 13 C 1.49360 * 120.00281 * 184.43184 * 11 10 9 14 14 O 1.21356 * 119.99424 * 0.02562 * 13 11 10 15 15 N 1.34773 * 119.99769 * 179.97438 * 13 11 10 16 16 C 1.46504 * 119.99515 * 179.97438 * 15 13 11 17 17 H 1.08995 * 109.47161 * 325.00235 * 16 15 13 18 18 C 1.50699 * 109.47238 * 205.00170 * 16 15 13 19 19 H 1.08000 * 119.99530 * 326.81933 * 18 16 15 20 20 C 1.37874 * 120.00322 * 146.81644 * 18 16 15 21 21 N 1.31512 * 120.00077 * 180.85026 * 20 18 16 22 22 Si 1.86797 * 119.99719 * 0.85694 * 20 18 16 23 23 H 1.48506 * 109.47229 * 265.65773 * 22 20 18 24 24 H 1.48495 * 109.47602 * 25.65831 * 22 20 18 25 25 H 1.48504 * 109.47238 * 145.65929 * 22 20 18 26 26 C 1.53006 * 109.46966 * 85.00227 * 16 15 13 27 27 C 1.53000 * 109.46970 * 296.53372 * 26 16 15 28 28 C 1.38078 * 119.95957 * 89.99754 * 5 4 3 29 29 H 1.08998 * 109.46848 * 299.99841 * 1 2 3 30 30 H 1.08997 * 109.47133 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.46823 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47139 * 240.00588 * 2 1 3 33 33 H 1.08999 * 109.47616 * 120.00224 * 2 1 3 34 34 H 1.08996 * 109.47176 * 59.99741 * 4 3 2 35 35 H 1.09003 * 109.46799 * 300.00486 * 4 3 2 36 36 H 1.08003 * 119.92459 * 359.96704 * 6 5 4 37 37 H 1.08007 * 119.96352 * 180.02562 * 7 6 5 38 38 H 1.07998 * 120.03917 * 180.28084 * 8 7 6 39 39 H 0.97008 * 119.99195 * 144.67215 * 10 9 8 40 40 H 0.96995 * 120.00680 * 0.02562 * 15 13 11 41 41 H 0.97003 * 119.99560 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47026 * 56.53466 * 26 16 15 43 43 H 1.08992 * 109.46973 * 176.53586 * 26 16 15 44 44 H 1.09000 * 109.46926 * 179.97438 * 27 26 16 45 45 H 1.08998 * 109.47322 * 299.99912 * 27 26 16 46 46 H 1.09006 * 109.46955 * 60.00177 * 27 26 16 47 47 H 1.07995 * 120.04158 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8195 2.9162 0.0001 6 6 3.9974 3.5842 -1.1978 7 6 4.3535 4.9203 -1.2018 8 6 4.5274 5.5938 -0.0085 9 6 4.3551 4.9245 1.1964 10 7 4.5354 5.6014 2.4053 11 6 5.4829 6.5541 2.5094 12 8 6.1250 6.8807 1.5325 13 6 5.7429 7.2081 3.8268 14 8 5.1012 6.8811 4.8036 15 7 6.6908 8.1605 3.9309 16 6 6.9454 8.8023 5.2231 17 1 6.0082 8.9005 5.7709 18 6 7.5405 10.1682 4.9969 19 1 8.1885 10.3414 4.1504 20 6 7.2578 11.1967 5.8705 21 7 7.7638 12.3928 5.6638 22 14 6.1563 10.8909 7.3478 23 1 4.7571 11.2522 7.0053 24 1 6.2190 9.4557 7.7237 25 1 6.6168 11.7220 8.4891 26 6 7.9226 7.9479 6.0331 27 6 7.2834 6.5914 6.3367 28 6 3.9978 3.5817 1.1967 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8333 0.9768 -0.8907 35 1 3.8340 0.9764 0.8892 36 1 3.8581 3.0610 -2.1324 37 1 4.4913 5.4390 -2.1391 38 1 4.8011 6.6385 -0.0123 39 1 3.9785 5.3855 3.1697 40 1 7.2039 8.4215 3.1503 41 1 7.5651 13.1163 6.2787 42 1 8.8368 7.7984 5.4588 43 1 8.1598 8.4552 6.9682 44 1 7.9797 5.9826 6.9134 45 1 6.3691 6.7409 6.9111 46 1 7.0461 6.0841 5.4015 47 1 3.8594 3.0593 2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128082261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:04 Heat of formation + Delta-G solvation = -114.658817 kcal Electronic energy + Delta-G solvation = -28031.354329 eV Core-core repulsion = 23985.354526 eV Total energy + Delta-G solvation = -4045.999803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16444 -40.69069 -39.61714 -38.58541 -37.27516 -36.04386 -34.42633 -33.31163 -33.15414 -31.56627 -30.92506 -29.63140 -26.96437 -26.41175 -24.62423 -23.63057 -23.40331 -22.89617 -21.55047 -21.20389 -20.16496 -18.77528 -18.35512 -17.68185 -17.50273 -17.38787 -17.15318 -16.97387 -16.79192 -16.07676 -15.95013 -15.55187 -15.28803 -15.08650 -14.79940 -14.64694 -14.14825 -13.99420 -13.90642 -13.78186 -13.73226 -13.47550 -13.27247 -12.98928 -12.89206 -12.60452 -12.50969 -12.38263 -12.25370 -12.13370 -12.07479 -11.83503 -11.70439 -11.40607 -11.23281 -10.90258 -10.63928 -10.54126 -9.94314 -9.88960 -9.27967 -8.39770 -6.48276 -0.05661 0.27121 0.57903 1.25504 1.34735 1.36392 1.46878 2.09649 2.27153 2.54676 2.63976 3.01312 3.09506 3.45271 3.80456 3.88547 4.10326 4.21003 4.27858 4.28353 4.31240 4.36916 4.37516 4.42897 4.48895 4.53898 4.55196 4.64924 4.75472 4.89231 4.95484 5.06314 5.07723 5.14976 5.17937 5.21332 5.24106 5.29756 5.33125 5.45636 5.50223 5.55144 5.58090 5.83819 5.97208 6.09382 6.27975 6.50391 6.57581 6.72434 6.98664 7.20744 8.75108 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.002193 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.423657 B =12765.302498 C =13342.277070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.407 6.407 4 C 0.106 3.894 5 C -0.081 4.081 6 C -0.108 4.108 7 C -0.106 4.106 8 C -0.133 4.133 9 C 0.120 3.880 10 N -0.635 5.635 11 C 0.514 3.486 12 O -0.520 6.520 13 C 0.499 3.501 14 O -0.543 6.543 15 N -0.669 5.669 16 C 0.241 3.759 17 H 0.044 0.956 18 C -0.533 4.533 19 H 0.051 0.949 20 C 0.031 3.969 21 N -0.929 5.929 22 Si 0.928 3.072 23 H -0.275 1.275 24 H -0.240 1.240 25 H -0.277 1.277 26 C -0.126 4.126 27 C -0.136 4.136 28 C -0.120 4.120 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.122 0.878 39 H 0.430 0.570 40 H 0.409 0.591 41 H 0.271 0.729 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.043 0.957 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 -26.239 -11.791 30.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.328 6.328 4 C 0.030 3.970 5 C -0.082 4.082 6 C -0.126 4.126 7 C -0.124 4.124 8 C -0.153 4.153 9 C 0.027 3.973 10 N -0.282 5.282 11 C 0.296 3.704 12 O -0.395 6.395 13 C 0.279 3.721 14 O -0.422 6.422 15 N -0.318 5.318 16 C 0.138 3.862 17 H 0.062 0.938 18 C -0.571 4.571 19 H 0.069 0.931 20 C -0.170 4.170 21 N -0.567 5.567 22 Si 0.751 3.249 23 H -0.200 1.200 24 H -0.163 1.163 25 H -0.202 1.202 26 C -0.165 4.165 27 C -0.194 4.194 28 C -0.140 4.140 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.140 0.860 39 H 0.269 0.731 40 H 0.245 0.755 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.247 -25.845 -11.646 30.497 hybrid contribution -0.041 0.690 0.713 0.993 sum -11.288 -25.154 -10.933 29.660 Atomic orbital electron populations 1.21776 0.93416 1.03257 1.02479 1.22668 0.95983 0.82781 1.01204 1.87952 1.21043 1.28145 1.95652 1.21342 0.81545 0.91590 1.02530 1.19615 0.99987 0.95954 0.92657 1.21367 0.98480 0.94347 0.98439 1.21301 0.98384 0.94916 0.97847 1.21419 1.00969 1.00883 0.91996 1.17894 1.02477 0.91894 0.85043 1.43043 1.34916 1.36128 1.14121 1.20366 0.80332 0.80592 0.89125 1.90743 1.48574 1.61582 1.38613 1.19953 0.81984 0.81721 0.88446 1.90719 1.49374 1.63526 1.38605 1.46329 1.35497 1.35695 1.14307 1.19154 0.95465 0.90573 0.81026 0.93802 1.21162 1.29952 0.93478 1.12555 0.93056 1.25684 0.96564 0.94268 1.00476 1.69995 1.45722 1.02229 1.38783 0.86025 0.79124 0.80181 0.79537 1.20046 1.16336 1.20216 1.22035 0.99021 0.95621 0.99858 1.21805 1.00062 0.96611 1.00876 1.20979 1.02070 0.91241 0.99693 0.92743 0.92435 0.89176 0.91991 0.92426 0.90349 0.91250 0.83262 0.83411 0.85966 0.73073 0.75537 0.91948 0.92149 0.92104 0.92036 0.93623 0.93763 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.05 0.54 6.66 71.98 0.48 1.02 16 3 O -0.41 -6.83 10.33 -148.98 -1.54 -8.36 16 4 C 0.11 1.43 6.06 71.24 0.43 1.86 16 5 C -0.08 -1.47 5.51 -19.89 -0.11 -1.58 16 6 C -0.11 -1.85 9.70 22.29 0.22 -1.63 16 7 C -0.11 -2.11 10.04 22.25 0.22 -1.89 16 8 C -0.13 -3.42 8.69 22.40 0.19 -3.22 16 9 C 0.12 3.01 6.29 38.21 0.24 3.25 16 10 N -0.64 -16.86 5.32 -304.84 -1.62 -18.48 16 11 C 0.51 16.76 7.73 87.24 0.67 17.43 16 12 O -0.52 -18.64 13.93 -3.35 -0.05 -18.69 16 13 C 0.50 18.45 6.39 87.24 0.56 19.00 16 14 O -0.54 -21.06 13.61 -3.26 -0.04 -21.11 16 15 N -0.67 -27.14 5.00 -447.52 -2.24 -29.38 16 16 C 0.24 10.97 1.79 44.25 0.08 11.05 16 17 H 0.04 2.12 4.93 -2.39 -0.01 2.11 16 18 C -0.53 -28.68 9.05 25.60 0.23 -28.45 16 19 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 20 C 0.03 1.71 5.47 84.65 0.46 2.17 16 21 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 22 Si 0.93 42.73 26.61 68.60 1.83 44.56 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.24 -10.40 6.21 99.48 0.62 -9.78 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 C -0.13 -5.13 5.34 30.60 0.16 -4.97 16 27 C -0.14 -4.83 8.48 71.98 0.61 -4.22 16 28 C -0.12 -2.44 9.62 22.40 0.22 -2.23 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.75 8.09 -2.39 -0.02 0.74 16 35 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.12 3.60 6.25 -2.91 -0.02 3.59 16 39 H 0.43 9.91 8.30 -92.70 -0.77 9.14 16 40 H 0.41 16.21 8.06 -92.71 -0.75 15.46 16 41 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.06 2.51 7.40 -2.39 -0.02 2.49 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.04 1.69 7.75 -2.39 -0.02 1.67 16 46 H 0.04 1.56 5.68 -2.38 -0.01 1.54 16 47 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -66.38 388.35 1.45 -64.93 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.60 Total: 34.56 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.41 Total: 6.86 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -3.56 Total: -102.75 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.63 Total: -48.16 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.83 Total: 44.56 kcal Total: -66.38 1.45 -64.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128082261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.727 kcal (2) G-P(sol) polarization free energy of solvation -66.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds