Wall clock time and date at job start Tue Mar 31 2020 18:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47663 * 2 1 4 4 C 1.42896 * 114.00305 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47120 * 180.02562 * 4 3 2 6 6 C 1.38298 * 119.92338 * 89.99765 * 5 4 3 7 7 C 1.38098 * 120.07609 * 180.02562 * 6 5 4 8 8 C 1.38928 * 119.92367 * 0.02562 * 7 6 5 9 9 N 1.39725 * 120.07813 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99648 * 35.09807 * 9 8 7 11 11 O 1.21373 * 119.99894 * 355.37711 * 10 9 8 12 12 C 1.49354 * 119.99531 * 175.38506 * 10 9 8 13 13 O 1.21360 * 120.00303 * 359.97438 * 12 10 9 14 14 N 1.34780 * 119.99531 * 180.02562 * 12 10 9 15 15 C 1.46498 * 119.99910 * 179.97438 * 14 12 10 16 16 H 1.09002 * 109.46872 * 324.99451 * 15 14 12 17 17 C 1.50698 * 109.47491 * 204.99663 * 15 14 12 18 18 H 1.08003 * 119.99643 * 359.97438 * 17 15 14 19 19 C 1.37877 * 120.00417 * 179.97438 * 17 15 14 20 20 N 1.31513 * 119.99882 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 119.99890 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47287 * 90.00184 * 21 19 17 23 23 H 1.48507 * 109.47215 * 209.99782 * 21 19 17 24 24 H 1.48494 * 109.47507 * 329.99846 * 21 19 17 25 25 C 1.53000 * 109.47628 * 84.99334 * 15 14 12 26 26 C 1.52999 * 109.47331 * 295.00474 * 25 15 14 27 27 C 1.38929 * 119.84797 * 0.25041 * 8 7 6 28 28 C 1.38104 * 119.92425 * 359.47223 * 27 8 7 29 29 H 1.09007 * 109.47006 * 59.99316 * 1 2 3 30 30 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47048 * 300.00313 * 1 2 3 32 32 H 1.09006 * 109.46985 * 240.00079 * 2 1 3 33 33 H 1.08999 * 109.47234 * 120.00827 * 2 1 3 34 34 H 1.08998 * 109.47477 * 59.99781 * 4 3 2 35 35 H 1.09002 * 109.46902 * 299.99761 * 4 3 2 36 36 H 1.08004 * 119.96071 * 0.02619 * 6 5 4 37 37 H 1.08001 * 120.03642 * 180.02562 * 7 6 5 38 38 H 0.96993 * 120.00181 * 215.09451 * 9 8 7 39 39 H 0.96996 * 120.00377 * 359.97438 * 14 12 10 40 40 H 0.96998 * 119.99867 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.46936 * 54.99756 * 25 15 14 42 42 H 1.08997 * 109.47324 * 174.99944 * 25 15 14 43 43 H 1.08996 * 109.47621 * 179.97438 * 26 25 15 44 44 H 1.09006 * 109.47039 * 300.00099 * 26 25 15 45 45 H 1.09006 * 109.47176 * 59.99229 * 26 25 15 46 46 H 1.08003 * 120.04222 * 179.72786 * 27 8 7 47 47 H 1.07997 * 119.96593 * 180.24795 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 0.0001 6 6 3.9980 3.5819 1.1990 7 6 4.3536 4.9163 1.2034 8 6 4.5316 5.5899 0.0014 9 7 4.8909 6.9402 0.0020 10 6 5.7135 7.4182 0.9567 11 8 6.0751 6.6966 1.8632 12 6 6.1800 8.8358 0.8991 13 8 5.8188 9.5572 -0.0075 14 7 7.0031 9.3136 1.8534 15 6 7.4612 10.7040 1.7967 16 1 7.6000 10.9986 0.7565 17 6 8.7693 10.8325 2.5339 18 1 9.2146 9.9652 2.9987 19 6 9.3975 12.0571 2.6152 20 7 8.8554 13.1131 2.0489 21 14 11.0192 12.2161 3.5284 22 1 12.1429 11.9808 2.5865 23 1 11.1322 13.5810 4.1027 24 1 11.0719 11.2131 4.6221 25 6 6.4169 11.6122 2.4490 26 6 5.1264 11.5773 1.6277 27 6 4.3459 4.9195 -1.2011 28 6 3.9959 3.5835 -1.1981 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.8333 0.9766 -0.8908 35 1 3.8340 0.9763 0.8892 36 1 3.8590 3.0576 2.1330 37 1 4.4931 5.4355 2.1400 38 1 4.5483 7.5335 -0.6845 39 1 7.2922 8.7370 2.5778 40 1 9.2976 13.9745 2.1057 41 1 6.2128 11.2627 3.4611 42 1 6.7961 12.6333 2.4867 43 1 4.3822 12.2239 2.0926 44 1 5.3304 11.9267 0.6155 45 1 4.7472 10.5561 1.5900 46 1 4.4792 5.4413 -2.1373 47 1 3.8554 3.0606 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128099060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:10 Heat of formation + Delta-G solvation = -95.002827 kcal Electronic energy + Delta-G solvation = -27775.216189 eV Core-core repulsion = 23730.068734 eV Total energy + Delta-G solvation = -4045.147455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86172 -39.46170 -38.43249 -37.69951 -35.55663 -34.83455 -32.46301 -32.11372 -31.12850 -31.00105 -30.28247 -27.37472 -26.25602 -24.22155 -23.18650 -23.14325 -22.83561 -21.40118 -20.25201 -19.51367 -18.66870 -17.51107 -17.01303 -16.62328 -16.36842 -16.20292 -15.70005 -15.68983 -15.26621 -14.80356 -14.41245 -14.27767 -13.99072 -13.68186 -13.60011 -13.33889 -13.21825 -13.09482 -12.77108 -12.65488 -12.12184 -11.91852 -11.78360 -11.62629 -11.51013 -11.37795 -11.33480 -11.11240 -10.94644 -10.89005 -10.41315 -10.35531 -10.28810 -9.96361 -9.72101 -9.17468 -9.15227 -8.99267 -8.58457 -8.27166 -8.06101 -6.19351 -4.29079 0.92825 1.28116 1.84440 2.65258 3.22607 3.25500 3.29571 3.32391 3.64658 3.86438 4.05962 4.31724 4.57300 4.59621 4.66847 4.83255 4.87754 4.95993 4.98191 5.04132 5.06627 5.13124 5.25951 5.32088 5.43765 5.50236 5.54627 5.73449 5.86552 6.06970 6.17662 6.29260 6.32760 6.33989 6.42544 6.52923 6.82510 6.86571 6.92162 6.99045 7.11106 7.16420 7.24816 7.47108 7.61191 7.75404 7.87939 8.05865 8.40945 8.59199 8.83329 9.37783 10.86052 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.001918 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.167901 B =14594.442131 C =15003.200093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.108 3.892 5 C -0.112 4.112 6 C -0.079 4.079 7 C -0.124 4.124 8 C 0.156 3.844 9 N -0.652 5.652 10 C 0.507 3.493 11 O -0.505 6.505 12 C 0.495 3.505 13 O -0.529 6.529 14 N -0.667 5.667 15 C 0.267 3.733 16 H 0.055 0.945 17 C -0.537 4.537 18 H 0.064 0.936 19 C 0.068 3.932 20 N -0.882 5.882 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.129 4.129 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.079 4.079 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.143 0.857 38 H 0.423 0.577 39 H 0.402 0.598 40 H 0.266 0.734 41 H 0.035 0.965 42 H 0.104 0.896 43 H 0.027 0.973 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.130 0.870 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.927 -22.127 -4.994 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.031 3.969 5 C -0.113 4.113 6 C -0.097 4.097 7 C -0.144 4.144 8 C 0.061 3.939 9 N -0.299 5.299 10 C 0.290 3.710 11 O -0.379 6.379 12 C 0.273 3.727 13 O -0.407 6.407 14 N -0.315 5.315 15 C 0.166 3.834 16 H 0.073 0.927 17 C -0.576 4.576 18 H 0.082 0.918 19 C -0.135 4.135 20 N -0.519 5.519 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.168 4.168 26 C -0.196 4.196 27 C -0.166 4.166 28 C -0.098 4.098 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.160 0.840 38 H 0.261 0.739 39 H 0.236 0.764 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.122 0.878 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.148 0.852 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.936 -21.649 -4.982 25.707 hybrid contribution 1.014 -0.086 0.445 1.110 sum -11.922 -21.735 -4.537 25.202 Atomic orbital electron populations 1.21743 0.93711 1.02171 1.03275 1.22468 0.95679 0.83933 1.00020 1.87997 1.20683 1.26233 1.95399 1.21252 0.81621 0.93196 1.00783 1.19521 1.03147 0.95050 0.93602 1.20926 0.97415 0.93869 0.97525 1.21334 0.99972 0.94988 0.98073 1.17855 0.97973 0.83762 0.94296 1.43258 1.46836 1.08517 1.31288 1.21043 0.78409 0.89745 0.81764 1.90719 1.55074 1.59094 1.32969 1.19569 0.82140 0.86291 0.84688 1.90746 1.56944 1.58289 1.34770 1.46467 1.43959 1.16088 1.25019 1.19032 0.92030 0.73673 0.98625 0.92706 1.21202 1.05095 0.95361 1.35895 0.91762 1.24870 0.97984 0.95404 0.95274 1.69881 1.38761 1.00020 1.43206 0.86403 0.83118 0.77511 0.79847 1.20504 1.21012 1.19744 1.21965 0.93666 1.04368 0.96778 1.21859 0.97968 0.99311 1.00504 1.20929 1.04248 0.94766 0.96656 1.20772 0.97997 0.93494 0.97523 0.91823 0.91152 0.91783 0.93449 0.93410 0.92531 0.92487 0.85618 0.83962 0.73851 0.76376 0.92428 0.94634 0.87816 0.95432 0.92918 0.94646 0.85209 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.15 0.38 -0.51 16 2 C 0.06 0.37 6.66 37.15 0.25 0.62 16 3 O -0.38 -3.74 10.33 -35.23 -0.36 -4.10 16 4 C 0.11 0.91 6.06 36.01 0.22 1.13 16 5 C -0.11 -1.17 5.51 -104.58 -0.58 -1.75 16 6 C -0.08 -0.89 9.69 -39.61 -0.38 -1.28 16 7 C -0.12 -1.64 8.70 -39.38 -0.34 -1.99 16 8 C 0.16 2.04 6.30 -83.75 -0.53 1.51 16 9 N -0.65 -9.04 5.32 -10.30 -0.05 -9.10 16 10 C 0.51 8.52 7.73 -11.63 -0.09 8.43 16 11 O -0.51 -9.07 13.91 5.48 0.08 -9.00 16 12 C 0.49 9.60 6.45 -11.63 -0.08 9.52 16 13 O -0.53 -11.09 13.62 5.49 0.07 -11.01 16 14 N -0.67 -13.91 5.01 -55.40 -0.28 -14.19 16 15 C 0.27 6.52 2.24 -69.08 -0.15 6.37 16 16 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 17 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 20 N -0.88 -23.96 11.30 55.43 0.63 -23.33 16 21 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 26 C -0.14 -2.95 8.52 37.16 0.32 -2.63 16 27 C -0.15 -1.58 9.97 -39.37 -0.39 -1.98 16 28 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 29 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.14 2.06 6.22 -52.49 -0.33 1.73 16 38 H 0.42 5.19 8.30 -40.82 -0.34 4.86 16 39 H 0.40 7.89 8.01 -40.82 -0.33 7.56 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 45 H 0.03 0.72 5.65 -51.93 -0.29 0.43 16 46 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -29.50 390.54 -8.36 -37.86 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.00 Total: 11.07 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.30 Total: 0.58 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.29 Total: -46.62 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.21 Total: -24.11 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.50 -8.36 -37.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128099060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.140 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds