Wall clock time and date at job start Tue Mar 31 2020 18:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47663 * 2 1 4 4 C 1.42896 * 114.00305 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47120 * 180.02562 * 4 3 2 6 6 C 1.38298 * 119.92338 * 89.99765 * 5 4 3 7 7 C 1.38098 * 120.07609 * 180.02562 * 6 5 4 8 8 C 1.38928 * 119.92367 * 0.02562 * 7 6 5 9 9 N 1.39725 * 120.07813 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99648 * 35.09807 * 9 8 7 11 11 O 1.21373 * 119.99894 * 355.37711 * 10 9 8 12 12 C 1.49354 * 119.99531 * 175.38506 * 10 9 8 13 13 O 1.21360 * 120.00303 * 359.97438 * 12 10 9 14 14 N 1.34780 * 119.99531 * 180.02562 * 12 10 9 15 15 C 1.46498 * 119.99910 * 179.97438 * 14 12 10 16 16 H 1.09002 * 109.46872 * 324.99451 * 15 14 12 17 17 C 1.50698 * 109.47491 * 204.99663 * 15 14 12 18 18 H 1.08003 * 119.99643 * 359.97438 * 17 15 14 19 19 C 1.37877 * 120.00417 * 179.97438 * 17 15 14 20 20 N 1.31513 * 119.99882 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 119.99890 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47287 * 90.00184 * 21 19 17 23 23 H 1.48507 * 109.47215 * 209.99782 * 21 19 17 24 24 H 1.48494 * 109.47507 * 329.99846 * 21 19 17 25 25 C 1.53000 * 109.47628 * 84.99334 * 15 14 12 26 26 C 1.52999 * 109.47331 * 295.00474 * 25 15 14 27 27 C 1.38929 * 119.84797 * 0.25041 * 8 7 6 28 28 C 1.38104 * 119.92425 * 359.47223 * 27 8 7 29 29 H 1.09007 * 109.47006 * 59.99316 * 1 2 3 30 30 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47048 * 300.00313 * 1 2 3 32 32 H 1.09006 * 109.46985 * 240.00079 * 2 1 3 33 33 H 1.08999 * 109.47234 * 120.00827 * 2 1 3 34 34 H 1.08998 * 109.47477 * 59.99781 * 4 3 2 35 35 H 1.09002 * 109.46902 * 299.99761 * 4 3 2 36 36 H 1.08004 * 119.96071 * 0.02619 * 6 5 4 37 37 H 1.08001 * 120.03642 * 180.02562 * 7 6 5 38 38 H 0.96993 * 120.00181 * 215.09451 * 9 8 7 39 39 H 0.96996 * 120.00377 * 359.97438 * 14 12 10 40 40 H 0.96998 * 119.99867 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.46936 * 54.99756 * 25 15 14 42 42 H 1.08997 * 109.47324 * 174.99944 * 25 15 14 43 43 H 1.08996 * 109.47621 * 179.97438 * 26 25 15 44 44 H 1.09006 * 109.47039 * 300.00099 * 26 25 15 45 45 H 1.09006 * 109.47176 * 59.99229 * 26 25 15 46 46 H 1.08003 * 120.04222 * 179.72786 * 27 8 7 47 47 H 1.07997 * 119.96593 * 180.24795 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 0.0001 6 6 3.9980 3.5819 1.1990 7 6 4.3536 4.9163 1.2034 8 6 4.5316 5.5899 0.0014 9 7 4.8909 6.9402 0.0020 10 6 5.7135 7.4182 0.9567 11 8 6.0751 6.6966 1.8632 12 6 6.1800 8.8358 0.8991 13 8 5.8188 9.5572 -0.0075 14 7 7.0031 9.3136 1.8534 15 6 7.4612 10.7040 1.7967 16 1 7.6000 10.9986 0.7565 17 6 8.7693 10.8325 2.5339 18 1 9.2146 9.9652 2.9987 19 6 9.3975 12.0571 2.6152 20 7 8.8554 13.1131 2.0489 21 14 11.0192 12.2161 3.5284 22 1 12.1429 11.9808 2.5865 23 1 11.1322 13.5810 4.1027 24 1 11.0719 11.2131 4.6221 25 6 6.4169 11.6122 2.4490 26 6 5.1264 11.5773 1.6277 27 6 4.3459 4.9195 -1.2011 28 6 3.9959 3.5835 -1.1981 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.8333 0.9766 -0.8908 35 1 3.8340 0.9763 0.8892 36 1 3.8590 3.0576 2.1330 37 1 4.4931 5.4355 2.1400 38 1 4.5483 7.5335 -0.6845 39 1 7.2922 8.7370 2.5778 40 1 9.2976 13.9745 2.1057 41 1 6.2128 11.2627 3.4611 42 1 6.7961 12.6333 2.4867 43 1 4.3822 12.2239 2.0926 44 1 5.3304 11.9267 0.6155 45 1 4.7472 10.5561 1.5900 46 1 4.4792 5.4413 -2.1373 47 1 3.8554 3.0606 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128099060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:09 Heat of formation + Delta-G solvation = -113.655057 kcal Electronic energy + Delta-G solvation = -27776.025010 eV Core-core repulsion = 23730.068734 eV Total energy + Delta-G solvation = -4045.956276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13866 -40.63345 -39.59191 -38.58194 -37.22676 -36.09311 -34.33221 -32.84391 -32.77650 -31.97178 -31.06233 -29.21327 -27.32242 -25.63662 -24.58941 -24.01720 -23.62427 -22.49473 -21.70352 -21.20638 -20.10701 -18.70594 -18.18865 -17.66577 -17.45750 -17.21877 -17.11406 -16.93856 -16.67906 -16.10079 -15.83449 -15.45495 -15.14666 -14.96779 -14.62900 -14.46966 -14.24940 -14.05360 -13.88235 -13.79031 -13.50498 -13.25387 -13.21408 -13.00249 -12.82137 -12.70493 -12.40096 -12.36415 -12.16803 -12.11752 -12.09179 -11.94505 -11.60530 -11.41313 -11.11885 -10.64625 -10.54194 -10.52902 -9.92417 -9.85987 -9.24287 -8.19225 -6.36174 -0.10688 0.41397 0.54646 1.31374 1.44821 1.46392 1.56420 2.12731 2.38898 2.55400 2.73990 3.10705 3.12937 3.48371 3.84255 3.90594 4.02687 4.18828 4.26171 4.34327 4.39239 4.45748 4.47823 4.54062 4.54605 4.57259 4.68041 4.70585 4.89850 5.00981 5.03373 5.06693 5.15522 5.19782 5.25084 5.29695 5.34594 5.37402 5.38166 5.55371 5.58674 5.67547 5.78137 5.93688 6.01242 6.10504 6.29540 6.53452 6.66056 6.77744 7.08739 7.35642 8.85954 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.001918 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.167901 B =14594.442131 C =15003.200093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.107 3.893 5 C -0.111 4.111 6 C -0.086 4.086 7 C -0.141 4.141 8 C 0.128 3.872 9 N -0.636 5.636 10 C 0.515 3.485 11 O -0.519 6.519 12 C 0.496 3.504 13 O -0.545 6.545 14 N -0.670 5.670 15 C 0.275 3.725 16 H 0.016 0.984 17 C -0.554 4.554 18 H 0.068 0.932 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.969 3.031 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.265 1.265 25 C -0.123 4.123 26 C -0.127 4.127 27 C -0.140 4.140 28 C -0.078 4.078 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.430 0.570 39 H 0.408 0.592 40 H 0.267 0.733 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.040 0.960 46 H 0.151 0.849 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 -24.490 -5.432 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.329 6.329 4 C 0.031 3.969 5 C -0.112 4.112 6 C -0.104 4.104 7 C -0.161 4.161 8 C 0.035 3.965 9 N -0.283 5.283 10 C 0.298 3.702 11 O -0.395 6.395 12 C 0.276 3.724 13 O -0.425 6.425 14 N -0.320 5.320 15 C 0.173 3.827 16 H 0.034 0.966 17 C -0.592 4.592 18 H 0.086 0.914 19 C -0.179 4.179 20 N -0.547 5.547 21 Si 0.793 3.207 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.184 4.184 27 C -0.160 4.160 28 C -0.097 4.097 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.142 0.858 38 H 0.270 0.730 39 H 0.244 0.756 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.169 0.831 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.415 -24.053 -5.441 28.073 hybrid contribution 1.059 0.527 0.503 1.285 sum -12.355 -23.526 -4.938 27.028 Atomic orbital electron populations 1.21775 0.93389 1.03253 1.02479 1.22663 0.96009 0.82845 1.01151 1.87955 1.21185 1.28093 1.95638 1.21325 0.81418 0.91860 1.02323 1.19866 1.01754 0.96236 0.93338 1.21108 0.97294 0.93235 0.98810 1.21303 1.01260 0.95953 0.97558 1.18055 0.99984 0.83177 0.95282 1.43079 1.45565 1.09301 1.30310 1.20355 0.79162 0.88211 0.82516 1.90723 1.56070 1.58922 1.33748 1.19969 0.81231 0.87469 0.83731 1.90732 1.57298 1.59244 1.35187 1.46238 1.44739 1.15041 1.25936 1.18660 0.92309 0.75605 0.96136 0.96624 1.21513 1.05942 0.95692 1.36056 0.91416 1.25674 1.01151 0.95088 0.95978 1.70007 1.40085 1.00418 1.44159 0.85395 0.78981 0.77581 0.78698 1.20320 1.20662 1.18971 1.21820 0.94395 1.02685 0.97313 1.21715 0.97356 1.00047 0.99295 1.21190 1.03046 0.95233 0.96546 1.21146 0.96775 0.93150 0.98612 0.92439 0.89166 0.92734 0.92054 0.92475 0.90560 0.91431 0.84364 0.85808 0.73012 0.75644 0.92359 0.94164 0.90252 0.93205 0.94489 0.94143 0.83125 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.05 0.55 6.66 71.98 0.48 1.03 16 3 O -0.41 -7.06 10.33 -148.98 -1.54 -8.60 16 4 C 0.11 1.51 6.06 71.24 0.43 1.94 16 5 C -0.11 -2.08 5.51 -19.84 -0.11 -2.19 16 6 C -0.09 -1.86 9.69 22.25 0.22 -1.64 16 7 C -0.14 -3.71 8.70 22.40 0.19 -3.52 16 8 C 0.13 3.25 6.30 38.21 0.24 3.49 16 9 N -0.64 -17.36 5.32 -304.84 -1.62 -18.98 16 10 C 0.52 17.38 7.73 87.24 0.67 18.05 16 11 O -0.52 -18.83 13.91 -3.32 -0.05 -18.88 16 12 C 0.50 19.52 6.45 87.24 0.56 20.09 16 13 O -0.55 -23.23 13.62 -3.28 -0.04 -23.27 16 14 N -0.67 -28.53 5.01 -447.53 -2.24 -30.78 16 15 C 0.28 13.80 2.24 44.24 0.10 13.90 16 16 H 0.02 0.91 7.58 -2.39 -0.02 0.90 16 17 C -0.55 -29.15 8.73 25.60 0.22 -28.93 16 18 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.02 1.16 5.29 84.65 0.45 1.61 16 20 N -0.91 -50.37 11.30 21.45 0.24 -50.13 16 21 Si 0.97 41.81 29.54 68.60 2.03 43.84 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 C -0.12 -5.89 5.45 30.59 0.17 -5.73 16 26 C -0.13 -5.40 8.52 71.98 0.61 -4.78 16 27 C -0.14 -2.75 9.97 22.40 0.22 -2.53 16 28 C -0.08 -1.35 9.69 22.25 0.22 -1.13 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 35 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 36 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.12 3.68 6.22 -2.91 -0.02 3.66 16 38 H 0.43 10.30 8.30 -92.71 -0.77 9.53 16 39 H 0.41 16.28 8.01 -92.71 -0.74 15.54 16 40 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.08 4.22 5.95 -2.39 -0.01 4.20 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.04 1.66 7.85 -2.38 -0.02 1.64 16 45 H 0.04 1.65 5.65 -2.38 -0.01 1.64 16 46 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 47 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -64.10 390.54 1.68 -62.42 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.51 Total: 35.48 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.42 Total: 8.90 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -3.62 Total: -99.89 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -1.63 Total: -50.75 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -64.10 1.68 -62.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128099060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.238 kcal (2) G-P(sol) polarization free energy of solvation -64.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds