Wall clock time and date at job start Tue Mar 31 2020 18:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47451 * 2 1 4 4 H 1.09001 * 109.47033 * 305.82118 * 3 2 1 5 5 C 1.50696 * 109.47332 * 185.81876 * 3 2 1 6 6 H 1.07994 * 120.00307 * 245.35959 * 5 3 2 7 7 C 1.37889 * 119.99824 * 65.35644 * 5 3 2 8 8 N 1.31512 * 119.99962 * 196.89939 * 7 5 3 9 9 Si 1.86799 * 119.99728 * 16.89937 * 7 5 3 10 10 H 1.48503 * 109.46928 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47198 * 299.99943 * 9 7 5 12 12 H 1.48499 * 109.47280 * 60.00077 * 9 7 5 13 13 N 1.46504 * 109.46886 * 65.81824 * 3 2 1 14 14 C 1.34774 * 120.00221 * 275.00161 * 13 3 2 15 15 O 1.21357 * 120.00127 * 0.02562 * 14 13 3 16 16 C 1.49334 * 119.99776 * 180.02562 * 14 13 3 17 17 O 1.21389 * 120.00282 * 359.97438 * 16 14 13 18 18 N 1.34783 * 119.99661 * 180.02562 * 16 14 13 19 19 C 1.39864 * 119.99796 * 185.62751 * 18 16 14 20 20 C 1.38919 * 120.02113 * 212.42778 * 19 18 16 21 21 C 1.38055 * 119.98088 * 179.73967 * 20 19 18 22 22 C 1.38748 * 120.02143 * 0.53499 * 21 20 19 23 23 O 1.35949 * 119.98175 * 179.69711 * 22 21 20 24 24 C 1.42904 * 116.99959 * 175.76665 * 23 22 21 25 25 C 1.53002 * 109.46864 * 84.48291 * 24 23 22 26 26 C 1.52997 * 109.47078 * 204.48113 * 24 23 22 27 27 C 1.38751 * 120.03828 * 359.71481 * 22 21 20 28 28 C 1.38058 * 120.01999 * 0.02608 * 27 22 21 29 29 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47140 * 299.99896 * 1 2 3 31 31 H 1.08998 * 109.47447 * 59.99393 * 1 2 3 32 32 H 1.09005 * 109.46459 * 240.00170 * 2 1 3 33 33 H 1.08993 * 109.47021 * 120.00509 * 2 1 3 34 34 H 0.96995 * 119.99648 * 354.94950 * 8 7 5 35 35 H 0.97003 * 119.99719 * 94.99957 * 13 3 2 36 36 H 0.96998 * 120.00194 * 5.62688 * 18 16 14 37 37 H 1.08007 * 120.00669 * 359.97163 * 20 19 18 38 38 H 1.07999 * 119.99259 * 180.25212 * 21 20 19 39 39 H 1.08999 * 109.47146 * 324.48455 * 24 23 22 40 40 H 1.09001 * 109.46929 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.47057 * 299.99726 * 25 24 23 42 42 H 1.08999 * 109.47105 * 60.00139 * 25 24 23 43 43 H 1.09002 * 109.47522 * 60.00431 * 26 24 23 44 44 H 1.09001 * 109.46943 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.47411 * 300.00180 * 26 24 23 46 46 H 1.07997 * 119.99111 * 179.97438 * 27 22 21 47 47 H 1.08004 * 120.01121 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5941 1.9855 -0.8333 5 6 3.5401 1.4449 -0.1440 6 1 4.1596 1.8067 0.6632 7 6 4.1218 0.9850 -1.3066 8 7 5.3991 0.6721 -1.3237 9 14 3.0956 0.8065 -2.8572 10 1 3.9496 0.2967 -3.9600 11 1 1.9858 -0.1486 -2.6091 12 1 2.5354 2.1288 -3.2350 13 7 1.6694 2.0914 1.2601 14 6 0.4538 2.6578 1.3943 15 8 -0.3339 2.6297 0.4716 16 6 0.0763 3.3198 2.6786 17 8 0.8641 3.3474 3.6017 18 7 -1.1395 3.8857 2.8131 19 6 -1.4510 4.6071 3.9701 20 6 -2.7531 4.6162 4.4540 21 6 -3.0586 5.3242 5.5992 22 6 -2.0678 6.0355 6.2606 23 8 -2.3707 6.7374 7.3848 24 6 -1.2859 7.3701 8.0667 25 6 -1.0034 8.7297 7.4244 26 6 -1.6545 7.5679 9.5383 27 6 -0.7680 6.0312 5.7751 28 6 -0.4596 5.3194 4.6330 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9484 0.8335 -0.5407 35 1 2.2989 2.1135 1.9977 36 1 -1.7985 3.7927 2.1074 37 1 -3.5256 4.0665 3.9366 38 1 -4.0700 5.3281 5.9779 39 1 -0.3971 6.7431 7.9958 40 1 -0.1756 9.2121 7.9442 41 1 -0.7407 8.5888 6.3760 42 1 -1.8922 9.3567 7.4952 43 1 -1.8557 6.5993 9.9960 44 1 -0.8268 8.0501 10.0585 45 1 -2.5433 8.1949 9.6092 46 1 0.0026 6.5855 6.2903 47 1 0.5521 5.3165 4.2550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128317430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:28 Heat of formation + Delta-G solvation = -86.246875 kcal Electronic energy + Delta-G solvation = -28298.993450 eV Core-core repulsion = 24254.225681 eV Total energy + Delta-G solvation = -4044.767768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02655 -40.21550 -38.81632 -37.55490 -35.65553 -34.65582 -33.30561 -32.49476 -31.52846 -31.20004 -29.08341 -27.69437 -27.48821 -24.83754 -23.74471 -22.68299 -22.22056 -21.11691 -20.43453 -19.69844 -18.84396 -18.53198 -17.58875 -17.15624 -16.35865 -16.02387 -15.74391 -15.52782 -15.15734 -14.94256 -14.46575 -14.25375 -14.03793 -13.67082 -13.55012 -13.40316 -13.14754 -12.85195 -12.74342 -12.68476 -12.57217 -12.54778 -12.41169 -12.29182 -11.83221 -11.63757 -11.39648 -11.22348 -11.00585 -10.91259 -10.78182 -10.51574 -10.07520 -9.97197 -9.66945 -9.31848 -9.18917 -9.11729 -8.40869 -8.33545 -7.89234 -6.65134 -4.29288 0.99287 1.13983 1.79850 2.56364 2.91025 3.32787 3.39304 3.42282 3.54095 3.66897 3.97556 4.35541 4.35811 4.48051 4.58048 4.68194 4.71080 4.90490 4.97775 5.09372 5.10652 5.12467 5.25860 5.30155 5.34948 5.36552 5.65382 5.70250 5.73700 5.82082 5.96179 5.99392 6.09508 6.14432 6.17077 6.21229 6.53791 6.59013 6.67873 6.77211 6.88656 6.99253 7.19064 7.19717 7.25017 7.48538 7.78301 8.15539 8.23725 8.46567 8.74019 9.40035 10.76104 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.002197 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.844043 B =12741.091208 C =13400.319922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.245 3.755 4 H 0.047 0.953 5 C -0.621 4.621 6 H 0.064 0.936 7 C 0.040 3.960 8 N -0.894 5.894 9 Si 1.040 2.960 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.661 5.661 14 C 0.495 3.505 15 O -0.531 6.531 16 C 0.506 3.494 17 O -0.506 6.506 18 N -0.648 5.648 19 C 0.111 3.889 20 C -0.103 4.103 21 C -0.133 4.133 22 C 0.115 3.885 23 O -0.312 6.312 24 C 0.075 3.925 25 C -0.181 4.181 26 C -0.148 4.148 27 C -0.189 4.189 28 C -0.080 4.080 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.270 0.730 35 H 0.406 0.594 36 H 0.422 0.578 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.133 0.867 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.214 12.136 16.751 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.143 3.857 4 H 0.064 0.936 5 C -0.659 4.659 6 H 0.082 0.918 7 C -0.167 4.167 8 N -0.526 5.526 9 Si 0.867 3.133 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.309 5.309 14 C 0.274 3.726 15 O -0.410 6.410 16 C 0.289 3.711 17 O -0.379 6.379 18 N -0.295 5.295 19 C 0.017 3.983 20 C -0.123 4.123 21 C -0.153 4.153 22 C 0.069 3.931 23 O -0.226 6.226 24 C 0.019 3.981 25 C -0.239 4.239 26 C -0.205 4.205 27 C -0.208 4.208 28 C -0.100 4.100 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.241 0.759 36 H 0.260 0.740 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.150 0.850 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.221 11.602 15.200 25.075 hybrid contribution 0.266 0.558 1.667 1.778 sum -15.954 12.160 16.868 26.209 Atomic orbital electron populations 1.21903 0.97340 0.99270 1.01755 1.22385 0.93837 0.99374 1.02353 1.19268 0.96426 0.88800 0.81229 0.93576 1.22067 0.89312 1.49931 1.04560 0.91755 1.25701 0.97627 0.92222 1.01137 1.70868 1.07146 1.40211 1.34390 0.84121 0.75553 0.77731 0.75881 1.20785 1.19441 1.20526 1.46207 1.13422 1.52552 1.18762 1.19668 0.84409 0.81335 0.87207 1.90733 1.50385 1.59332 1.40523 1.20863 0.82021 0.78966 0.89227 1.90748 1.49924 1.56673 1.40571 1.43179 1.16023 1.50995 1.19327 1.17663 0.94210 0.96400 0.89997 1.20722 0.95264 1.00293 0.96026 1.20168 0.99010 0.99890 0.96188 1.18968 0.93282 0.93277 0.87539 1.86110 1.35927 1.63856 1.36695 1.22445 0.89494 0.93630 0.92527 1.22394 1.02751 0.96859 1.01848 1.21848 1.02795 1.03021 0.92859 1.21166 0.95755 1.04700 0.99196 1.21011 0.99954 0.93978 0.95063 0.94683 0.93620 0.92802 0.90816 0.92719 0.91942 0.75886 0.73993 0.84729 0.84786 0.90750 0.90977 0.91676 0.91423 0.91620 0.90505 0.91484 0.84957 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.53 37.16 0.32 -2.46 16 2 C -0.14 -3.04 5.27 -26.73 -0.14 -3.18 16 3 C 0.25 5.68 1.81 -69.08 -0.13 5.56 16 4 H 0.05 1.13 6.26 -51.93 -0.33 0.81 16 5 C -0.62 -16.48 9.01 -34.44 -0.31 -16.79 16 6 H 0.06 1.81 7.96 -52.49 -0.42 1.39 16 7 C 0.04 1.11 5.31 -17.82 -0.09 1.02 16 8 N -0.89 -26.18 13.70 55.43 0.76 -25.42 16 9 Si 1.04 24.25 26.28 -169.99 -4.47 19.79 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -5.78 5.69 56.52 0.32 -5.46 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.66 -13.44 5.02 -55.40 -0.28 -13.72 16 14 C 0.50 9.19 6.49 -11.64 -0.08 9.12 16 15 O -0.53 -10.43 13.62 5.49 0.07 -10.35 16 16 C 0.51 8.23 7.62 -11.64 -0.09 8.14 16 17 O -0.51 -8.98 14.13 5.46 0.08 -8.90 16 18 N -0.65 -8.54 5.33 -10.27 -0.05 -8.60 16 19 C 0.11 1.39 6.29 -83.69 -0.53 0.87 16 20 C -0.10 -1.05 9.96 -39.40 -0.39 -1.44 16 21 C -0.13 -1.34 9.98 -39.46 -0.39 -1.74 16 22 C 0.11 1.24 6.60 -39.20 -0.26 0.99 16 23 O -0.31 -3.13 9.80 -19.58 -0.19 -3.33 16 24 C 0.08 0.56 2.85 -26.73 -0.08 0.49 16 25 C -0.18 -1.18 9.17 37.16 0.34 -0.84 16 26 C -0.15 -0.84 9.56 37.16 0.36 -0.49 16 27 C -0.19 -2.10 8.23 -39.46 -0.32 -2.42 16 28 C -0.08 -1.03 8.65 -39.40 -0.34 -1.38 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.86 5.63 -51.93 -0.29 0.56 16 31 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 32 H 0.07 1.65 4.77 -51.93 -0.25 1.40 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.27 7.87 8.73 -40.82 -0.36 7.51 16 35 H 0.41 7.99 8.00 -40.82 -0.33 7.66 16 36 H 0.42 4.80 8.29 -40.82 -0.34 4.47 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.07 0.55 6.28 -51.93 -0.33 0.22 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.48 6.94 -51.93 -0.36 0.12 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.13 1.23 5.44 -52.49 -0.29 0.95 16 47 H 0.14 1.97 6.38 -52.48 -0.33 1.63 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -30.46 378.78 -7.21 -37.67 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.70 Total: 11.72 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.13 Total: -4.57 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.43 Total: -47.73 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.04 Total: -22.58 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.47 Total: 19.79 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.46 -7.21 -37.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128317430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.581 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds