Wall clock time and date at job start Tue Mar 31 2020 18:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47451 * 2 1 4 4 H 1.09001 * 109.47033 * 305.82118 * 3 2 1 5 5 C 1.50696 * 109.47332 * 185.81876 * 3 2 1 6 6 H 1.07994 * 120.00307 * 245.35959 * 5 3 2 7 7 C 1.37889 * 119.99824 * 65.35644 * 5 3 2 8 8 N 1.31512 * 119.99962 * 196.89939 * 7 5 3 9 9 Si 1.86799 * 119.99728 * 16.89937 * 7 5 3 10 10 H 1.48503 * 109.46928 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47198 * 299.99943 * 9 7 5 12 12 H 1.48499 * 109.47280 * 60.00077 * 9 7 5 13 13 N 1.46504 * 109.46886 * 65.81824 * 3 2 1 14 14 C 1.34774 * 120.00221 * 275.00161 * 13 3 2 15 15 O 1.21357 * 120.00127 * 0.02562 * 14 13 3 16 16 C 1.49334 * 119.99776 * 180.02562 * 14 13 3 17 17 O 1.21389 * 120.00282 * 359.97438 * 16 14 13 18 18 N 1.34783 * 119.99661 * 180.02562 * 16 14 13 19 19 C 1.39864 * 119.99796 * 185.62751 * 18 16 14 20 20 C 1.38919 * 120.02113 * 212.42778 * 19 18 16 21 21 C 1.38055 * 119.98088 * 179.73967 * 20 19 18 22 22 C 1.38748 * 120.02143 * 0.53499 * 21 20 19 23 23 O 1.35949 * 119.98175 * 179.69711 * 22 21 20 24 24 C 1.42904 * 116.99959 * 175.76665 * 23 22 21 25 25 C 1.53002 * 109.46864 * 84.48291 * 24 23 22 26 26 C 1.52997 * 109.47078 * 204.48113 * 24 23 22 27 27 C 1.38751 * 120.03828 * 359.71481 * 22 21 20 28 28 C 1.38058 * 120.01999 * 0.02608 * 27 22 21 29 29 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47140 * 299.99896 * 1 2 3 31 31 H 1.08998 * 109.47447 * 59.99393 * 1 2 3 32 32 H 1.09005 * 109.46459 * 240.00170 * 2 1 3 33 33 H 1.08993 * 109.47021 * 120.00509 * 2 1 3 34 34 H 0.96995 * 119.99648 * 354.94950 * 8 7 5 35 35 H 0.97003 * 119.99719 * 94.99957 * 13 3 2 36 36 H 0.96998 * 120.00194 * 5.62688 * 18 16 14 37 37 H 1.08007 * 120.00669 * 359.97163 * 20 19 18 38 38 H 1.07999 * 119.99259 * 180.25212 * 21 20 19 39 39 H 1.08999 * 109.47146 * 324.48455 * 24 23 22 40 40 H 1.09001 * 109.46929 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.47057 * 299.99726 * 25 24 23 42 42 H 1.08999 * 109.47105 * 60.00139 * 25 24 23 43 43 H 1.09002 * 109.47522 * 60.00431 * 26 24 23 44 44 H 1.09001 * 109.46943 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.47411 * 300.00180 * 26 24 23 46 46 H 1.07997 * 119.99111 * 179.97438 * 27 22 21 47 47 H 1.08004 * 120.01121 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5941 1.9855 -0.8333 5 6 3.5401 1.4449 -0.1440 6 1 4.1596 1.8067 0.6632 7 6 4.1218 0.9850 -1.3066 8 7 5.3991 0.6721 -1.3237 9 14 3.0956 0.8065 -2.8572 10 1 3.9496 0.2967 -3.9600 11 1 1.9858 -0.1486 -2.6091 12 1 2.5354 2.1288 -3.2350 13 7 1.6694 2.0914 1.2601 14 6 0.4538 2.6578 1.3943 15 8 -0.3339 2.6297 0.4716 16 6 0.0763 3.3198 2.6786 17 8 0.8641 3.3474 3.6017 18 7 -1.1395 3.8857 2.8131 19 6 -1.4510 4.6071 3.9701 20 6 -2.7531 4.6162 4.4540 21 6 -3.0586 5.3242 5.5992 22 6 -2.0678 6.0355 6.2606 23 8 -2.3707 6.7374 7.3848 24 6 -1.2859 7.3701 8.0667 25 6 -1.0034 8.7297 7.4244 26 6 -1.6545 7.5679 9.5383 27 6 -0.7680 6.0312 5.7751 28 6 -0.4596 5.3194 4.6330 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9484 0.8335 -0.5407 35 1 2.2989 2.1135 1.9977 36 1 -1.7985 3.7927 2.1074 37 1 -3.5256 4.0665 3.9366 38 1 -4.0700 5.3281 5.9779 39 1 -0.3971 6.7431 7.9958 40 1 -0.1756 9.2121 7.9442 41 1 -0.7407 8.5888 6.3760 42 1 -1.8922 9.3567 7.4952 43 1 -1.8557 6.5993 9.9960 44 1 -0.8268 8.0501 10.0585 45 1 -2.5433 8.1949 9.6092 46 1 0.0026 6.5855 6.2903 47 1 0.5521 5.3165 4.2550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128317430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:27 Heat of formation + Delta-G solvation = -106.720266 kcal Electronic energy + Delta-G solvation = -28299.881243 eV Core-core repulsion = 24254.225681 eV Total energy + Delta-G solvation = -4045.655561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19405 -41.20071 -40.11927 -38.57427 -37.32306 -35.76581 -34.48980 -33.96414 -33.18641 -32.04005 -30.06746 -29.29131 -28.16902 -26.19267 -24.55796 -24.30467 -23.44650 -21.93951 -21.80367 -21.30424 -20.31095 -19.43408 -19.10078 -18.45864 -17.57169 -17.42743 -16.74433 -16.68137 -16.37802 -15.76249 -15.73289 -15.41590 -15.13243 -15.09986 -14.63621 -14.52086 -14.45812 -14.30818 -14.12624 -13.85430 -13.60175 -13.56838 -13.27232 -13.20326 -12.97479 -12.79322 -12.67252 -12.48755 -12.28927 -12.26247 -11.91329 -11.79300 -11.64625 -11.41625 -11.14593 -11.03356 -10.67367 -10.49652 -10.06447 -10.03286 -8.83667 -8.80811 -6.48321 -0.06868 0.27856 0.59711 1.28117 1.46927 1.52577 1.71337 2.08508 2.21780 2.42420 2.67034 2.72144 2.98940 3.39757 3.75196 3.80603 3.88334 3.98562 4.14235 4.17394 4.28990 4.34752 4.37445 4.42524 4.48620 4.60594 4.69540 4.78315 4.79744 4.86709 4.91786 5.03226 5.08380 5.13374 5.16326 5.20606 5.22853 5.23843 5.28823 5.34089 5.40305 5.50286 5.60000 5.69246 5.94317 5.98950 6.40999 6.44740 6.49305 6.71058 6.96922 7.29017 8.56423 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.002197 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.844043 B =12741.091208 C =13400.319922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.250 3.750 4 H 0.038 0.962 5 C -0.620 4.620 6 H 0.035 0.965 7 C -0.005 4.005 8 N -0.925 5.925 9 Si 1.072 2.928 10 H -0.284 1.284 11 H -0.237 1.237 12 H -0.269 1.269 13 N -0.670 5.670 14 C 0.500 3.500 15 O -0.538 6.538 16 C 0.512 3.488 17 O -0.526 6.526 18 N -0.629 5.629 19 C 0.086 3.914 20 C -0.090 4.090 21 C -0.135 4.135 22 C 0.114 3.886 23 O -0.319 6.319 24 C 0.066 3.934 25 C -0.178 4.178 26 C -0.145 4.145 27 C -0.193 4.193 28 C -0.097 4.097 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.257 0.743 35 H 0.407 0.593 36 H 0.432 0.568 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.144 0.856 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.315 12.571 17.507 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.056 0.944 5 C -0.658 4.658 6 H 0.053 0.947 7 C -0.206 4.206 8 N -0.559 5.559 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.161 1.161 12 H -0.194 1.194 13 N -0.319 5.319 14 C 0.280 3.720 15 O -0.417 6.417 16 C 0.294 3.706 17 O -0.401 6.401 18 N -0.276 5.276 19 C -0.007 4.007 20 C -0.110 4.110 21 C -0.154 4.154 22 C 0.068 3.932 23 O -0.233 6.233 24 C 0.010 3.990 25 C -0.236 4.236 26 C -0.202 4.202 27 C -0.212 4.212 28 C -0.117 4.117 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.242 0.758 36 H 0.271 0.729 37 H 0.181 0.819 38 H 0.175 0.825 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.161 0.839 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.374 12.065 15.992 27.869 hybrid contribution 1.198 0.560 1.605 2.079 sum -18.177 12.625 17.596 28.274 Atomic orbital electron populations 1.21806 0.94997 1.00955 1.01633 1.22284 0.95864 0.97684 1.01916 1.19008 0.93918 0.90170 0.82244 0.94413 1.22247 0.91352 1.48673 1.03510 0.94674 1.26974 0.97796 0.91727 1.04126 1.70982 1.08229 1.42760 1.33948 0.83734 0.75296 0.79007 0.72613 1.20993 1.16138 1.19412 1.46047 1.14478 1.53438 1.17958 1.19949 0.83492 0.80573 0.88023 1.90718 1.50416 1.59383 1.41137 1.20301 0.82986 0.79339 0.87941 1.90752 1.50802 1.57795 1.40795 1.42993 1.14870 1.49820 1.19918 1.17846 0.95264 0.97353 0.90209 1.20990 0.94679 0.99541 0.95741 1.20511 0.99935 0.99089 0.95828 1.19170 0.93247 0.93024 0.87719 1.86115 1.37132 1.63750 1.36347 1.22711 0.88973 0.93845 0.93445 1.22378 1.03464 0.96446 1.01269 1.21870 1.03672 1.03102 0.91573 1.21254 0.96552 1.04632 0.98753 1.20974 0.99378 0.95276 0.96082 0.92120 0.93582 0.93029 0.91535 0.92929 0.93389 0.75783 0.72864 0.81893 0.82482 0.90848 0.89220 0.92832 0.91338 0.91951 0.88626 0.91286 0.83875 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.53 71.98 0.61 -4.24 16 2 C -0.14 -5.80 5.27 30.59 0.16 -5.64 16 3 C 0.25 11.52 1.81 44.24 0.08 11.60 16 4 H 0.04 1.82 6.26 -2.39 -0.01 1.81 16 5 C -0.62 -33.65 9.01 25.60 0.23 -33.42 16 6 H 0.03 2.06 7.96 -2.91 -0.02 2.04 16 7 C -0.01 -0.30 5.31 84.66 0.45 0.14 16 8 N -0.92 -55.68 13.70 21.45 0.29 -55.38 16 9 Si 1.07 48.31 26.28 68.60 1.80 50.11 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.24 -9.46 5.69 99.48 0.57 -8.90 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.67 -27.34 5.02 -447.56 -2.25 -29.59 16 14 C 0.50 18.21 6.49 87.23 0.57 18.77 16 15 O -0.54 -20.30 13.62 -3.27 -0.04 -20.34 16 16 C 0.51 16.38 7.62 87.23 0.66 17.04 16 17 O -0.53 -18.83 14.13 -3.37 -0.05 -18.88 16 18 N -0.63 -15.74 5.33 -304.74 -1.62 -17.36 16 19 C 0.09 2.05 6.29 38.19 0.24 2.29 16 20 C -0.09 -1.60 9.96 22.39 0.22 -1.38 16 21 C -0.13 -2.36 9.98 22.35 0.22 -2.13 16 22 C 0.11 2.29 6.60 22.51 0.15 2.44 16 23 O -0.32 -5.87 9.80 -92.98 -0.91 -6.78 16 24 C 0.07 0.89 2.85 30.59 0.09 0.98 16 25 C -0.18 -2.06 9.17 71.98 0.66 -1.40 16 26 C -0.15 -1.37 9.56 71.98 0.69 -0.69 16 27 C -0.19 -4.15 8.23 22.35 0.18 -3.97 16 28 C -0.10 -2.49 8.65 22.39 0.19 -2.30 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.62 5.63 -2.39 -0.01 1.60 16 31 H 0.05 1.85 7.89 -2.39 -0.02 1.83 16 32 H 0.07 2.86 4.77 -2.38 -0.01 2.85 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.26 15.63 8.73 -92.71 -0.81 14.82 16 35 H 0.41 16.42 8.00 -92.71 -0.74 15.68 16 36 H 0.43 8.95 8.29 -92.71 -0.77 8.18 16 37 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.07 1.00 6.28 -2.39 -0.01 0.99 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.05 0.74 6.94 -2.39 -0.02 0.73 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.14 2.62 5.44 -2.91 -0.02 2.60 16 47 H 0.12 3.50 6.38 -2.91 -0.02 3.48 16 Total: -1.00 -66.32 378.78 1.97 -64.35 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.67 Total: 35.78 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.41 Total: -1.91 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -3.58 Total: -102.34 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -1.00 Total: -46.01 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.80 Total: 50.11 kcal Total: -66.32 1.97 -64.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128317430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.368 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds