Wall clock time and date at job start Tue Mar 31 2020 18:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47080 * 2 1 4 4 H 1.08999 * 109.46944 * 306.58082 * 3 2 1 5 5 C 1.50703 * 109.47089 * 186.58152 * 3 2 1 6 6 H 1.07999 * 120.00099 * 245.43015 * 5 3 2 7 7 C 1.37881 * 119.99497 * 65.43423 * 5 3 2 8 8 N 1.31517 * 119.99653 * 195.01201 * 7 5 3 9 9 Si 1.86797 * 120.00379 * 15.00565 * 7 5 3 10 10 H 1.48497 * 109.47281 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47535 * 300.00347 * 9 7 5 12 12 H 1.48506 * 109.46822 * 60.00186 * 9 7 5 13 13 N 1.46504 * 109.47328 * 66.58430 * 3 2 1 14 14 C 1.34772 * 119.99901 * 275.00326 * 13 3 2 15 15 O 1.21362 * 120.00116 * 359.97438 * 14 13 3 16 16 C 1.49333 * 120.00243 * 179.97438 * 14 13 3 17 17 O 1.21388 * 119.99618 * 359.97438 * 16 14 13 18 18 N 1.34771 * 120.00324 * 179.97438 * 16 14 13 19 19 C 1.39872 * 120.00173 * 185.97333 * 18 16 14 20 20 C 1.38799 * 120.09851 * 21.25685 * 19 18 16 21 21 C 1.38160 * 119.98053 * 180.02562 * 20 19 18 22 22 C 1.38306 * 120.17596 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.19140 * 0.02562 * 22 21 20 24 24 C 1.38554 * 120.02070 * 359.71486 * 23 22 21 25 25 O 1.35959 * 120.08514 * 180.30346 * 24 23 22 26 26 C 1.42899 * 117.00263 * 354.95809 * 25 24 23 27 27 C 1.53003 * 109.46745 * 83.97366 * 26 25 24 28 28 C 1.52998 * 109.47260 * 203.96769 * 26 25 24 29 29 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47001 * 299.99599 * 1 2 3 31 31 H 1.08995 * 109.47288 * 60.00045 * 1 2 3 32 32 H 1.08997 * 109.46941 * 239.99716 * 2 1 3 33 33 H 1.09007 * 109.46881 * 120.00002 * 2 1 3 34 34 H 0.97003 * 120.00163 * 354.93610 * 8 7 5 35 35 H 0.96994 * 119.99959 * 94.99988 * 13 3 2 36 36 H 0.97006 * 119.99727 * 5.97489 * 18 16 14 37 37 H 1.07997 * 120.00745 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.91534 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.90610 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.98937 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.47183 * 323.97628 * 26 25 24 42 42 H 1.09006 * 109.47314 * 59.99879 * 27 26 25 43 43 H 1.08999 * 109.47299 * 179.97438 * 27 26 25 44 44 H 1.08999 * 109.47423 * 300.00163 * 27 26 25 45 45 H 1.08997 * 109.46679 * 60.00900 * 28 26 25 46 46 H 1.09001 * 109.46778 * 180.02562 * 28 26 25 47 47 H 1.08994 * 109.47724 * 300.00528 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5837 1.9891 -0.8252 5 6 3.5382 1.4456 -0.1629 6 1 4.1677 1.8028 0.6386 7 6 4.1050 0.9924 -1.3352 8 7 5.3898 0.7149 -1.3800 9 14 3.0483 0.7726 -2.8598 10 1 3.8904 0.2787 -3.9788 11 1 1.9718 -0.2108 -2.5784 12 1 2.4428 2.0758 -3.2344 13 7 1.6853 2.0859 1.2675 14 6 0.4715 2.6515 1.4195 15 8 -0.3276 2.6283 0.5063 16 6 0.1096 3.3069 2.7116 17 8 0.9086 3.3298 3.6252 18 7 -1.1040 3.8729 2.8635 19 6 -1.3988 4.5945 4.0250 20 6 -0.3718 5.1081 4.8048 21 6 -0.6658 5.8200 5.9518 22 6 -1.9817 6.0233 6.3258 23 6 -3.0101 5.5150 5.5544 24 6 -2.7246 4.8045 4.3997 25 8 -3.7352 4.3093 3.6368 26 6 -5.0635 4.4619 4.1410 27 6 -5.5933 5.8487 3.7705 28 6 -5.9678 3.3903 3.5287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 5.9527 0.8980 -0.6115 35 1 2.3240 2.1048 1.9972 36 1 -1.7731 3.7799 2.1674 37 1 0.6567 4.9505 4.5155 38 1 0.1342 6.2188 6.5581 39 1 -2.2065 6.5801 7.2235 40 1 -4.0366 5.6761 5.8493 41 1 -5.0551 4.3540 5.2255 42 1 -5.6017 5.9567 2.6859 43 1 -6.6067 5.9651 4.1547 44 1 -4.9492 6.6122 4.2066 45 1 -5.5904 2.4024 3.7927 46 1 -6.9811 3.5071 3.9130 47 1 -5.9762 3.4982 2.4442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128318333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:33 Heat of formation + Delta-G solvation = -81.659186 kcal Electronic energy + Delta-G solvation = -29023.498004 eV Core-core repulsion = 24978.929173 eV Total energy + Delta-G solvation = -4044.568831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17040 -40.08983 -38.65427 -37.53599 -35.67904 -34.83708 -33.40761 -32.46709 -31.50622 -30.46748 -29.45123 -27.64732 -27.49523 -24.90756 -23.81158 -22.48867 -22.06605 -21.30611 -20.31259 -19.66958 -19.03806 -18.31009 -17.43109 -17.13652 -16.32180 -16.02493 -15.69101 -15.52169 -15.18372 -15.00909 -14.59688 -14.40983 -13.93660 -13.87061 -13.41913 -13.34718 -13.14880 -12.77022 -12.69771 -12.64294 -12.52240 -12.36976 -12.17206 -12.00056 -11.81700 -11.80044 -11.25094 -11.08159 -11.01126 -10.95180 -10.76490 -10.63203 -10.49006 -9.95293 -9.59596 -9.19483 -9.07942 -8.74669 -8.41849 -8.29817 -7.93236 -6.62244 -4.27300 0.97129 1.22204 1.84778 2.56318 2.85866 3.34418 3.41276 3.46118 3.55898 3.72480 3.99825 4.37012 4.37922 4.49148 4.58312 4.70932 4.75541 4.87737 5.01184 5.12528 5.14536 5.18858 5.26932 5.33081 5.39310 5.41806 5.68158 5.71683 5.77248 5.92055 5.99156 6.01992 6.06910 6.17108 6.26838 6.39059 6.57144 6.66191 6.70337 6.79939 6.91613 7.01295 7.18330 7.23922 7.27481 7.51048 7.80807 8.17867 8.26460 8.49871 8.76449 9.42422 10.79010 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017328 B = 0.002819 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.524445 B = 9929.432407 C =11076.721451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.245 3.755 4 H 0.047 0.953 5 C -0.619 4.619 6 H 0.065 0.935 7 C 0.040 3.960 8 N -0.896 5.896 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.279 1.279 13 N -0.661 5.661 14 C 0.495 3.505 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.505 6.505 18 N -0.637 5.637 19 C 0.123 3.877 20 C -0.102 4.102 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.191 4.191 24 C 0.103 3.897 25 O -0.312 6.312 26 C 0.080 3.920 27 C -0.182 4.182 28 C -0.150 4.150 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.270 0.730 35 H 0.406 0.594 36 H 0.427 0.573 37 H 0.159 0.841 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.353 9.315 13.894 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.142 3.858 4 H 0.065 0.935 5 C -0.656 4.656 6 H 0.083 0.917 7 C -0.167 4.167 8 N -0.529 5.529 9 Si 0.867 3.133 10 H -0.208 1.208 11 H -0.193 1.193 12 H -0.205 1.205 13 N -0.310 5.310 14 C 0.274 3.726 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.380 6.380 18 N -0.282 5.282 19 C 0.028 3.972 20 C -0.122 4.122 21 C -0.153 4.153 22 C -0.121 4.121 23 C -0.211 4.211 24 C 0.055 3.945 25 O -0.226 6.226 26 C 0.024 3.976 27 C -0.239 4.239 28 C -0.207 4.207 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.241 0.759 36 H 0.265 0.735 37 H 0.176 0.824 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.221 8.623 12.029 25.873 hybrid contribution -0.169 0.689 1.945 2.070 sum -21.390 9.311 13.974 27.194 Atomic orbital electron populations 1.21903 0.97320 0.99253 1.01810 1.22419 0.93872 0.99404 1.02418 1.19277 0.96581 0.88879 0.81047 0.93537 1.22092 0.89376 1.49943 1.04231 0.91734 1.25699 0.97805 0.92418 1.00785 1.70866 1.05916 1.40970 1.35127 0.84134 0.75458 0.77772 0.75886 1.20831 1.19339 1.20519 1.46187 1.13258 1.52787 1.18732 1.19645 0.84459 0.81336 0.87143 1.90740 1.49574 1.59100 1.41356 1.20854 0.81909 0.78984 0.89313 1.90664 1.49488 1.56521 1.41327 1.43045 1.15769 1.49992 1.19400 1.17209 0.90426 0.98952 0.90607 1.21537 1.00132 0.95894 0.94618 1.21007 0.96576 1.00352 0.97337 1.20934 0.92383 0.99446 0.99384 1.21058 1.00368 1.03538 0.96091 1.18610 0.86493 0.97513 0.91843 1.86083 1.14426 1.75902 1.46200 1.22426 0.80117 0.96291 0.98752 1.22411 1.01650 0.96437 1.03416 1.21862 0.98230 0.98215 1.02403 0.94704 0.93540 0.92848 0.90705 0.92720 0.91968 0.75879 0.73517 0.82395 0.85449 0.85804 0.85011 0.90897 0.91242 0.91022 0.91735 0.91513 0.90506 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.55 37.16 0.32 -2.52 16 2 C -0.14 -3.11 5.25 -26.73 -0.14 -3.25 16 3 C 0.24 5.74 1.81 -69.08 -0.12 5.62 16 4 H 0.05 1.16 6.29 -51.93 -0.33 0.83 16 5 C -0.62 -16.57 9.02 -34.44 -0.31 -16.88 16 6 H 0.06 1.83 7.96 -52.49 -0.42 1.41 16 7 C 0.04 1.10 5.33 -17.82 -0.09 1.01 16 8 N -0.90 -26.46 13.70 55.43 0.76 -25.70 16 9 Si 1.04 24.47 26.23 -169.99 -4.46 20.01 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -5.80 5.61 56.52 0.32 -5.48 16 12 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 13 N -0.66 -13.69 5.03 -55.40 -0.28 -13.97 16 14 C 0.50 9.54 6.53 -11.64 -0.08 9.46 16 15 O -0.53 -10.84 13.63 5.49 0.07 -10.76 16 16 C 0.51 8.62 7.71 -11.64 -0.09 8.53 16 17 O -0.51 -9.07 13.47 5.46 0.07 -8.99 16 18 N -0.64 -9.45 5.30 -10.19 -0.05 -9.50 16 19 C 0.12 1.71 6.49 -83.56 -0.54 1.17 16 20 C -0.10 -1.37 8.76 -39.40 -0.35 -1.71 16 21 C -0.13 -1.44 10.04 -39.59 -0.40 -1.84 16 22 C -0.10 -0.95 10.04 -39.56 -0.40 -1.35 16 23 C -0.19 -1.85 8.20 -39.46 -0.32 -2.18 16 24 C 0.10 1.22 6.61 -39.04 -0.26 0.96 16 25 O -0.31 -3.48 9.17 -19.61 -0.18 -3.66 16 26 C 0.08 0.62 2.85 -26.73 -0.08 0.55 16 27 C -0.18 -1.17 9.15 37.16 0.34 -0.83 16 28 C -0.15 -1.00 9.56 37.16 0.36 -0.64 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.90 5.61 -51.93 -0.29 0.61 16 31 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 32 H 0.07 1.69 4.60 -51.93 -0.24 1.45 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 35 H 0.41 8.09 7.99 -40.82 -0.33 7.76 16 36 H 0.43 6.02 7.75 -40.82 -0.32 5.71 16 37 H 0.16 2.34 5.54 -52.49 -0.29 2.05 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.96 5.40 -52.48 -0.28 0.67 16 41 H 0.07 0.50 6.36 -51.93 -0.33 0.17 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.44 6.83 -51.93 -0.35 0.09 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -30.39 376.36 -7.19 -37.58 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -6.63 Total: 13.24 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.16 Total: -3.91 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.43 Total: -49.17 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.03 Total: -23.42 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.46 Total: 20.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.39 -7.19 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128318333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.082 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds