Wall clock time and date at job start Tue Mar 31 2020 18:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47080 * 2 1 4 4 H 1.08999 * 109.46944 * 306.58082 * 3 2 1 5 5 C 1.50703 * 109.47089 * 186.58152 * 3 2 1 6 6 H 1.07999 * 120.00099 * 245.43015 * 5 3 2 7 7 C 1.37881 * 119.99497 * 65.43423 * 5 3 2 8 8 N 1.31517 * 119.99653 * 195.01201 * 7 5 3 9 9 Si 1.86797 * 120.00379 * 15.00565 * 7 5 3 10 10 H 1.48497 * 109.47281 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47535 * 300.00347 * 9 7 5 12 12 H 1.48506 * 109.46822 * 60.00186 * 9 7 5 13 13 N 1.46504 * 109.47328 * 66.58430 * 3 2 1 14 14 C 1.34772 * 119.99901 * 275.00326 * 13 3 2 15 15 O 1.21362 * 120.00116 * 359.97438 * 14 13 3 16 16 C 1.49333 * 120.00243 * 179.97438 * 14 13 3 17 17 O 1.21388 * 119.99618 * 359.97438 * 16 14 13 18 18 N 1.34771 * 120.00324 * 179.97438 * 16 14 13 19 19 C 1.39872 * 120.00173 * 185.97333 * 18 16 14 20 20 C 1.38799 * 120.09851 * 21.25685 * 19 18 16 21 21 C 1.38160 * 119.98053 * 180.02562 * 20 19 18 22 22 C 1.38306 * 120.17596 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.19140 * 0.02562 * 22 21 20 24 24 C 1.38554 * 120.02070 * 359.71486 * 23 22 21 25 25 O 1.35959 * 120.08514 * 180.30346 * 24 23 22 26 26 C 1.42899 * 117.00263 * 354.95809 * 25 24 23 27 27 C 1.53003 * 109.46745 * 83.97366 * 26 25 24 28 28 C 1.52998 * 109.47260 * 203.96769 * 26 25 24 29 29 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47001 * 299.99599 * 1 2 3 31 31 H 1.08995 * 109.47288 * 60.00045 * 1 2 3 32 32 H 1.08997 * 109.46941 * 239.99716 * 2 1 3 33 33 H 1.09007 * 109.46881 * 120.00002 * 2 1 3 34 34 H 0.97003 * 120.00163 * 354.93610 * 8 7 5 35 35 H 0.96994 * 119.99959 * 94.99988 * 13 3 2 36 36 H 0.97006 * 119.99727 * 5.97489 * 18 16 14 37 37 H 1.07997 * 120.00745 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.91534 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.90610 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.98937 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.47183 * 323.97628 * 26 25 24 42 42 H 1.09006 * 109.47314 * 59.99879 * 27 26 25 43 43 H 1.08999 * 109.47299 * 179.97438 * 27 26 25 44 44 H 1.08999 * 109.47423 * 300.00163 * 27 26 25 45 45 H 1.08997 * 109.46679 * 60.00900 * 28 26 25 46 46 H 1.09001 * 109.46778 * 180.02562 * 28 26 25 47 47 H 1.08994 * 109.47724 * 300.00528 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5837 1.9891 -0.8252 5 6 3.5382 1.4456 -0.1629 6 1 4.1677 1.8028 0.6386 7 6 4.1050 0.9924 -1.3352 8 7 5.3898 0.7149 -1.3800 9 14 3.0483 0.7726 -2.8598 10 1 3.8904 0.2787 -3.9788 11 1 1.9718 -0.2108 -2.5784 12 1 2.4428 2.0758 -3.2344 13 7 1.6853 2.0859 1.2675 14 6 0.4715 2.6515 1.4195 15 8 -0.3276 2.6283 0.5063 16 6 0.1096 3.3069 2.7116 17 8 0.9086 3.3298 3.6252 18 7 -1.1040 3.8729 2.8635 19 6 -1.3988 4.5945 4.0250 20 6 -0.3718 5.1081 4.8048 21 6 -0.6658 5.8200 5.9518 22 6 -1.9817 6.0233 6.3258 23 6 -3.0101 5.5150 5.5544 24 6 -2.7246 4.8045 4.3997 25 8 -3.7352 4.3093 3.6368 26 6 -5.0635 4.4619 4.1410 27 6 -5.5933 5.8487 3.7705 28 6 -5.9678 3.3903 3.5287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 5.9527 0.8980 -0.6115 35 1 2.3240 2.1048 1.9972 36 1 -1.7731 3.7799 2.1674 37 1 0.6567 4.9505 4.5155 38 1 0.1342 6.2188 6.5581 39 1 -2.2065 6.5801 7.2235 40 1 -4.0366 5.6761 5.8493 41 1 -5.0551 4.3540 5.2255 42 1 -5.6017 5.9567 2.6859 43 1 -6.6067 5.9651 4.1547 44 1 -4.9492 6.6122 4.2066 45 1 -5.5904 2.4024 3.7927 46 1 -6.9811 3.5071 3.9130 47 1 -5.9762 3.4982 2.4442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128318333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:33 Heat of formation + Delta-G solvation = -102.214174 kcal Electronic energy + Delta-G solvation = -29024.389335 eV Core-core repulsion = 24978.929173 eV Total energy + Delta-G solvation = -4045.460162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32765 -41.21068 -40.00360 -38.47827 -37.36633 -36.06640 -34.50443 -34.03471 -33.21247 -31.35152 -30.38921 -29.33944 -28.14876 -26.30745 -24.70591 -24.21619 -23.19858 -22.19603 -21.68079 -21.29425 -20.38340 -19.59545 -18.86430 -18.38530 -17.56844 -17.43825 -16.83163 -16.62645 -16.31433 -15.97338 -15.73992 -15.50439 -15.35413 -15.08263 -14.70234 -14.56318 -14.51160 -14.27972 -14.06859 -13.84304 -13.62709 -13.42077 -13.16025 -12.94659 -12.75254 -12.71505 -12.68173 -12.52364 -12.32894 -12.17968 -11.88103 -11.80461 -11.70176 -11.58343 -11.38136 -11.11525 -10.61743 -10.52062 -10.04792 -9.63601 -8.87682 -8.83396 -6.49148 -0.12527 0.36682 0.62321 1.23293 1.46328 1.52283 1.70977 2.05894 2.11622 2.42039 2.63384 2.78085 2.99372 3.36601 3.79150 3.82922 3.94420 4.06915 4.14437 4.19420 4.27594 4.35787 4.39699 4.46274 4.47233 4.58793 4.70744 4.77199 4.82755 4.86786 4.93691 5.02224 5.07004 5.11528 5.19814 5.21689 5.25715 5.28624 5.36102 5.39064 5.49075 5.54479 5.58392 5.80551 5.90856 5.97225 6.34406 6.43690 6.47390 6.67641 6.95099 7.28545 8.56782 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017328 B = 0.002819 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.524445 B = 9929.432407 C =11076.721451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.250 3.750 4 H 0.037 0.963 5 C -0.618 4.618 6 H 0.036 0.964 7 C -0.005 4.005 8 N -0.926 5.926 9 Si 1.072 2.928 10 H -0.284 1.284 11 H -0.236 1.236 12 H -0.270 1.270 13 N -0.668 5.668 14 C 0.499 3.501 15 O -0.539 6.539 16 C 0.511 3.489 17 O -0.520 6.520 18 N -0.623 5.623 19 C 0.086 3.914 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.088 4.088 23 C -0.187 4.187 24 C 0.102 3.898 25 O -0.330 6.330 26 C 0.070 3.930 27 C -0.178 4.178 28 C -0.149 4.149 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.257 0.743 35 H 0.408 0.592 36 H 0.428 0.572 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.102 0.898 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.971 10.098 15.316 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.146 3.854 4 H 0.055 0.945 5 C -0.656 4.656 6 H 0.054 0.946 7 C -0.205 4.205 8 N -0.561 5.561 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.160 1.160 12 H -0.195 1.195 13 N -0.317 5.317 14 C 0.279 3.721 15 O -0.418 6.418 16 C 0.293 3.707 17 O -0.396 6.396 18 N -0.268 5.268 19 C -0.008 4.008 20 C -0.140 4.140 21 C -0.158 4.158 22 C -0.107 4.107 23 C -0.206 4.206 24 C 0.055 3.945 25 O -0.245 6.245 26 C 0.015 3.985 27 C -0.235 4.235 28 C -0.206 4.206 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.243 0.757 36 H 0.267 0.733 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.888 9.428 13.493 29.839 hybrid contribution 0.868 0.566 1.655 1.953 sum -24.020 9.994 15.148 30.105 Atomic orbital electron populations 1.21805 0.95167 1.00931 1.01522 1.22317 0.95717 0.97706 1.02118 1.19027 0.94149 0.90241 0.81984 0.94509 1.22265 0.91282 1.48760 1.03277 0.94567 1.26961 0.98021 0.91919 1.03647 1.70979 1.06947 1.43429 1.34753 0.83753 0.75088 0.79037 0.72788 1.20928 1.15999 1.19536 1.46025 1.14177 1.53542 1.17986 1.19935 0.83606 0.80600 0.87931 1.90720 1.49719 1.59301 1.42063 1.20286 0.82759 0.79475 0.88173 1.90671 1.50138 1.57431 1.41382 1.42888 1.14658 1.49261 1.20036 1.17448 0.91780 1.00732 0.90822 1.21487 0.99150 0.97330 0.96010 1.21276 0.98222 0.99819 0.96504 1.21378 0.91365 0.98013 0.99933 1.21438 1.02051 1.02223 0.94914 1.18724 0.85926 0.97413 0.92436 1.86078 1.15621 1.75941 1.46822 1.22753 0.78669 0.97402 0.99640 1.22392 1.02903 0.95376 1.02835 1.21900 0.99346 0.97405 1.01960 0.92038 0.93805 0.93142 0.91270 0.92778 0.93374 0.75674 0.73314 0.84605 0.83556 0.82142 0.82113 0.89494 0.92309 0.88636 0.91937 0.92464 0.87951 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.55 71.98 0.62 -4.47 16 2 C -0.14 -5.99 5.25 30.59 0.16 -5.83 16 3 C 0.25 11.77 1.81 44.24 0.08 11.85 16 4 H 0.04 1.83 6.29 -2.39 -0.02 1.81 16 5 C -0.62 -34.01 9.02 25.60 0.23 -33.78 16 6 H 0.04 2.15 7.96 -2.91 -0.02 2.12 16 7 C 0.00 -0.28 5.33 84.66 0.45 0.17 16 8 N -0.93 -56.28 13.70 21.45 0.29 -55.99 16 9 Si 1.07 48.97 26.23 68.60 1.80 50.77 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.24 -9.54 5.61 99.48 0.56 -8.98 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.67 -28.22 5.03 -447.55 -2.25 -30.47 16 14 C 0.50 19.41 6.53 87.23 0.57 19.98 16 15 O -0.54 -21.95 13.63 -3.28 -0.04 -22.00 16 16 C 0.51 17.76 7.71 87.23 0.67 18.43 16 17 O -0.52 -19.27 13.47 -3.37 -0.05 -19.31 16 18 N -0.62 -18.71 5.30 -304.50 -1.61 -20.32 16 19 C 0.09 2.37 6.49 38.27 0.25 2.62 16 20 C -0.12 -3.21 8.76 22.39 0.20 -3.02 16 21 C -0.14 -2.74 10.04 22.27 0.22 -2.52 16 22 C -0.09 -1.33 10.04 22.29 0.22 -1.11 16 23 C -0.19 -3.03 8.20 22.35 0.18 -2.84 16 24 C 0.10 2.28 6.61 22.62 0.15 2.43 16 25 O -0.33 -6.91 9.17 -93.09 -0.85 -7.76 16 26 C 0.07 0.92 2.85 30.59 0.09 1.01 16 27 C -0.18 -1.80 9.15 71.98 0.66 -1.14 16 28 C -0.15 -1.68 9.56 71.98 0.69 -0.99 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.63 5.61 -2.39 -0.01 1.62 16 31 H 0.05 1.89 7.94 -2.39 -0.02 1.88 16 32 H 0.07 3.02 4.60 -2.39 -0.01 3.01 16 33 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.26 15.77 8.73 -92.71 -0.81 14.96 16 35 H 0.41 16.87 7.99 -92.71 -0.74 16.13 16 36 H 0.43 12.19 7.75 -92.70 -0.72 11.48 16 37 H 0.14 4.21 5.54 -2.91 -0.02 4.19 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.16 1.61 5.40 -2.91 -0.02 1.60 16 41 H 0.09 0.88 6.36 -2.39 -0.02 0.87 16 42 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.06 0.66 6.83 -2.39 -0.02 0.65 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -67.53 376.36 2.10 -65.43 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -0.62 Total: 38.85 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.44 Total: 0.81 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.57 Total: -106.78 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.94 Total: -49.08 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.80 Total: 50.77 kcal Total: -67.53 2.10 -65.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128318333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.786 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds