Wall clock time and date at job start Tue Mar 31 2020 18:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42910 * 109.46814 * 2 1 4 4 C 1.35957 * 116.99935 * 180.02562 * 3 2 1 5 5 C 1.38551 * 120.08571 * 0.02562 * 4 3 2 6 6 C 1.38245 * 120.01996 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.90421 * 179.97438 * 6 5 4 8 8 C 1.38306 * 120.19257 * 359.97438 * 6 5 4 9 9 C 1.38170 * 120.17380 * 359.74826 * 8 6 5 10 10 C 1.38804 * 119.97627 * 0.50546 * 9 8 6 11 11 N 1.39878 * 120.09199 * 179.76833 * 10 9 8 12 12 C 1.34771 * 120.00010 * 19.96464 * 11 10 9 13 13 O 1.21382 * 120.00515 * 5.69093 * 12 11 10 14 14 C 1.49337 * 119.99834 * 185.69279 * 12 11 10 15 15 O 1.21367 * 119.99663 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00249 * 180.02562 * 14 12 11 17 17 C 1.46497 * 120.00215 * 179.97438 * 16 14 12 18 18 H 1.09000 * 109.47161 * 34.99776 * 17 16 14 19 19 C 1.50698 * 109.47415 * 154.99790 * 17 16 14 20 20 H 1.08003 * 119.99626 * 5.68197 * 19 17 16 21 21 C 1.37881 * 120.00475 * 185.68495 * 19 17 16 22 22 N 1.31506 * 120.00230 * 196.52009 * 21 19 17 23 23 Si 1.86799 * 119.99599 * 16.51748 * 21 19 17 24 24 H 1.48498 * 109.46967 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47337 * 300.00196 * 23 21 19 26 26 H 1.48499 * 109.47418 * 60.00183 * 23 21 19 27 27 C 1.53004 * 109.47302 * 274.99714 * 17 16 14 28 28 C 1.53002 * 109.46686 * 66.16850 * 27 17 16 29 29 H 1.09000 * 109.46421 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47341 * 300.00516 * 1 2 3 31 31 H 1.09000 * 109.46765 * 60.00372 * 1 2 3 32 32 H 1.08992 * 109.47616 * 239.99957 * 2 1 3 33 33 H 1.09003 * 109.47160 * 119.98979 * 2 1 3 34 34 H 1.08000 * 119.99297 * 359.95951 * 5 4 3 35 35 H 1.08991 * 109.47205 * 89.99571 * 7 6 5 36 36 H 1.08996 * 109.46886 * 210.00101 * 7 6 5 37 37 H 1.08996 * 109.46556 * 329.99388 * 7 6 5 38 38 H 1.07994 * 119.91458 * 180.02562 * 8 6 5 39 39 H 1.07996 * 120.01178 * 180.28080 * 9 8 6 40 40 H 0.96998 * 119.99408 * 199.95671 * 11 10 9 41 41 H 0.96997 * 119.99793 * 359.97438 * 16 14 12 42 42 H 0.97000 * 119.99830 * 354.93190 * 22 21 19 43 43 H 1.09001 * 109.46866 * 186.16831 * 27 17 16 44 44 H 1.08997 * 109.46790 * 306.17481 * 27 17 16 45 45 H 1.09002 * 109.47412 * 60.00612 * 28 27 17 46 46 H 1.09001 * 109.46544 * 179.97438 * 28 27 17 47 47 H 1.08991 * 109.47482 * 300.00189 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3542 1.5256 -0.0005 5 6 4.1998 0.4281 -0.0016 6 6 5.5702 0.6109 -0.0027 7 6 6.4876 -0.5847 -0.0032 8 6 6.1016 1.8878 -0.0033 9 6 5.2656 2.9879 -0.0080 10 6 3.8887 2.8127 -0.0016 11 7 3.0402 3.9247 -0.0015 12 6 3.5018 5.1246 -0.4057 13 8 4.6205 5.2206 -0.8668 14 6 2.6370 6.3362 -0.2863 15 8 1.5182 6.2401 0.1743 16 7 3.0983 7.5361 -0.6910 17 6 2.2497 8.7245 -0.5744 18 1 1.6389 8.6480 0.3251 19 6 3.1164 9.9544 -0.4899 20 1 4.1862 9.8705 -0.6120 21 6 2.5437 11.1868 -0.2567 22 7 3.2247 12.2851 -0.5004 23 14 0.8004 11.2962 0.4055 24 1 0.4211 12.7228 0.5673 25 1 -0.1326 10.6413 -0.5462 26 1 0.7267 10.6116 1.7212 27 6 1.3407 8.8245 -1.8011 28 6 0.3559 7.6536 -1.8028 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.7885 -0.5705 -0.0013 35 1 6.7079 -0.8731 -1.0310 36 1 7.4152 -0.3311 0.5098 37 1 6.0031 -1.4146 0.5112 38 1 7.1727 2.0254 -0.0045 39 1 5.6834 3.9838 -0.0130 40 1 2.1195 3.8321 0.2895 41 1 3.9923 7.6127 -1.0595 42 1 4.1537 12.2291 -0.7739 43 1 0.7885 9.7637 -1.7685 44 1 1.9470 8.7906 -2.7063 45 1 -0.2505 7.6874 -0.8977 46 1 -0.2920 7.7251 -2.6765 47 1 0.9080 6.7144 -1.8354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128393520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:38 Heat of formation + Delta-G solvation = -86.507898 kcal Electronic energy + Delta-G solvation = -28836.643056 eV Core-core repulsion = 24791.863969 eV Total energy + Delta-G solvation = -4044.779087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15268 -39.99934 -38.56881 -37.68307 -35.72678 -35.03394 -32.50382 -32.20915 -31.58566 -31.46222 -29.90011 -27.67204 -26.97948 -24.40420 -24.19765 -22.41265 -22.14675 -21.60816 -20.32617 -19.66689 -18.92527 -18.05228 -17.39487 -17.14176 -16.47262 -16.25056 -15.91280 -15.49460 -15.10374 -14.63482 -14.37613 -14.17898 -14.05521 -13.89023 -13.59263 -13.37455 -13.29194 -12.93913 -12.71988 -12.55752 -12.50861 -12.37166 -12.22593 -12.08912 -11.80064 -11.73919 -11.49011 -11.04290 -10.98820 -10.92095 -10.74298 -10.49991 -10.46384 -9.94521 -9.63421 -9.19121 -9.08919 -8.74099 -8.38951 -8.30015 -7.84800 -6.62629 -4.26865 0.95061 1.23217 1.84047 2.56978 2.87675 3.35095 3.41506 3.43830 3.56285 3.70611 4.00439 4.38093 4.46906 4.57783 4.63831 4.71248 4.80743 4.89223 4.93770 5.06194 5.12041 5.18013 5.32124 5.37216 5.38928 5.45526 5.60613 5.70155 5.72946 5.89981 5.99552 6.02401 6.07381 6.17648 6.29890 6.41721 6.57349 6.67206 6.70735 6.80470 6.92088 7.01827 7.16747 7.24623 7.27864 7.51612 7.81503 8.18347 8.26873 8.50331 8.76859 9.42520 10.78664 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002773 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.746741 B =10095.437313 C =11361.541432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 O -0.317 6.317 4 C 0.104 3.896 5 C -0.189 4.189 6 C -0.071 4.071 7 C -0.112 4.112 8 C -0.133 4.133 9 C -0.099 4.099 10 C 0.119 3.881 11 N -0.636 5.636 12 C 0.506 3.494 13 O -0.506 6.506 14 C 0.495 3.505 15 O -0.529 6.529 16 N -0.661 5.661 17 C 0.245 3.755 18 H 0.047 0.953 19 C -0.620 4.620 20 H 0.065 0.935 21 C 0.041 3.959 22 N -0.895 5.895 23 Si 1.040 2.960 24 H -0.282 1.282 25 H -0.268 1.268 26 H -0.279 1.279 27 C -0.141 4.141 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.162 0.838 40 H 0.426 0.574 41 H 0.406 0.594 42 H 0.270 0.730 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.034 0.966 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -27.219 0.841 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.231 6.231 4 C 0.057 3.943 5 C -0.209 4.209 6 C -0.072 4.072 7 C -0.168 4.168 8 C -0.152 4.152 9 C -0.119 4.119 10 C 0.023 3.977 11 N -0.281 5.281 12 C 0.289 3.711 13 O -0.380 6.380 14 C 0.274 3.726 15 O -0.408 6.408 16 N -0.310 5.310 17 C 0.143 3.857 18 H 0.064 0.936 19 C -0.658 4.658 20 H 0.083 0.917 21 C -0.167 4.167 22 N -0.527 5.527 23 Si 0.867 3.133 24 H -0.208 1.208 25 H -0.194 1.194 26 H -0.205 1.205 27 C -0.179 4.179 28 C -0.203 4.203 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.179 0.821 40 H 0.265 0.735 41 H 0.241 0.759 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.249 -25.860 1.240 25.920 hybrid contribution 1.358 -1.408 -0.484 2.016 sum 0.110 -27.268 0.755 27.279 Atomic orbital electron populations 1.21789 0.92578 1.02837 1.03875 1.22773 0.95947 0.81694 1.01291 1.86036 1.18408 1.29618 1.89039 1.18572 0.82781 0.92294 1.00646 1.20847 0.93404 0.97326 1.09282 1.19703 0.93243 0.95243 0.99023 1.20764 0.98487 0.95245 1.02325 1.20897 0.99921 0.91188 1.03207 1.21595 0.90314 1.01724 0.98290 1.17195 0.90352 0.83630 1.06479 1.43030 1.15805 1.06328 1.62926 1.20849 0.87614 0.84777 0.77829 1.90643 1.19838 1.85581 1.41977 1.19648 0.87007 0.84588 0.81334 1.90741 1.19182 1.85551 1.45320 1.46188 1.19443 1.06624 1.58710 1.19268 0.90100 0.81900 0.94469 0.93569 1.22076 0.95007 0.91956 1.56735 0.91736 1.25690 1.06045 0.91441 0.93476 1.70865 1.11171 1.29396 1.41308 0.84119 0.75231 0.76374 0.77555 1.20813 1.19450 1.20522 1.22385 0.97364 0.98186 0.99988 1.21904 0.99185 0.98988 1.00207 0.90381 0.91312 0.91342 0.92059 0.92044 0.85219 0.91136 0.91329 0.91746 0.85452 0.82074 0.73539 0.75879 0.91949 0.90834 0.92727 0.92834 0.94709 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.44 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.59 9.50 -19.60 -0.19 -3.78 16 4 C 0.10 1.27 6.70 -39.05 -0.26 1.01 16 5 C -0.19 -1.91 8.69 -39.46 -0.34 -2.25 16 6 C -0.07 -0.70 5.88 -104.59 -0.62 -1.32 16 7 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 8 C -0.13 -1.48 9.69 -39.58 -0.38 -1.87 16 9 C -0.10 -1.36 8.78 -39.40 -0.35 -1.70 16 10 C 0.12 1.67 6.51 -83.56 -0.54 1.13 16 11 N -0.64 -9.52 5.30 -10.19 -0.05 -9.57 16 12 C 0.51 8.66 7.73 -11.64 -0.09 8.57 16 13 O -0.51 -9.09 13.39 5.47 0.07 -9.02 16 14 C 0.50 9.57 6.51 -11.64 -0.08 9.49 16 15 O -0.53 -10.87 13.63 5.48 0.07 -10.79 16 16 N -0.66 -13.72 5.03 -55.40 -0.28 -14.00 16 17 C 0.25 5.77 1.81 -69.08 -0.13 5.64 16 18 H 0.05 1.15 6.25 -51.93 -0.32 0.83 16 19 C -0.62 -16.61 9.01 -34.44 -0.31 -16.92 16 20 H 0.06 1.83 7.96 -52.48 -0.42 1.41 16 21 C 0.04 1.13 5.31 -17.82 -0.09 1.03 16 22 N -0.89 -26.40 13.70 55.43 0.76 -25.64 16 23 Si 1.04 24.50 26.27 -169.99 -4.47 20.04 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -5.85 5.70 56.52 0.32 -5.53 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.14 -3.08 5.27 -26.73 -0.14 -3.22 16 28 C -0.15 -2.85 8.54 37.16 0.32 -2.53 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 33 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 34 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.40 8.08 -51.93 -0.42 -0.01 16 37 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.16 2.42 5.44 -52.49 -0.29 2.13 16 40 H 0.43 6.06 7.74 -40.82 -0.32 5.75 16 41 H 0.41 8.10 7.99 -40.82 -0.33 7.77 16 42 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 43 H 0.07 1.67 4.79 -51.93 -0.25 1.42 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 1.07 7.91 -51.93 -0.41 0.66 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.90 5.62 -51.93 -0.29 0.61 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -30.57 380.02 -7.19 -37.76 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -6.78 Total: 12.57 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.07 Total: -3.28 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.43 Total: -49.22 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.04 Total: -23.59 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.47 Total: 20.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.57 -7.19 -37.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128393520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.747 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds