Wall clock time and date at job start Tue Mar 31 2020 18:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42910 * 109.46814 * 2 1 4 4 C 1.35957 * 116.99935 * 180.02562 * 3 2 1 5 5 C 1.38551 * 120.08571 * 0.02562 * 4 3 2 6 6 C 1.38245 * 120.01996 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.90421 * 179.97438 * 6 5 4 8 8 C 1.38306 * 120.19257 * 359.97438 * 6 5 4 9 9 C 1.38170 * 120.17380 * 359.74826 * 8 6 5 10 10 C 1.38804 * 119.97627 * 0.50546 * 9 8 6 11 11 N 1.39878 * 120.09199 * 179.76833 * 10 9 8 12 12 C 1.34771 * 120.00010 * 19.96464 * 11 10 9 13 13 O 1.21382 * 120.00515 * 5.69093 * 12 11 10 14 14 C 1.49337 * 119.99834 * 185.69279 * 12 11 10 15 15 O 1.21367 * 119.99663 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00249 * 180.02562 * 14 12 11 17 17 C 1.46497 * 120.00215 * 179.97438 * 16 14 12 18 18 H 1.09000 * 109.47161 * 34.99776 * 17 16 14 19 19 C 1.50698 * 109.47415 * 154.99790 * 17 16 14 20 20 H 1.08003 * 119.99626 * 5.68197 * 19 17 16 21 21 C 1.37881 * 120.00475 * 185.68495 * 19 17 16 22 22 N 1.31506 * 120.00230 * 196.52009 * 21 19 17 23 23 Si 1.86799 * 119.99599 * 16.51748 * 21 19 17 24 24 H 1.48498 * 109.46967 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47337 * 300.00196 * 23 21 19 26 26 H 1.48499 * 109.47418 * 60.00183 * 23 21 19 27 27 C 1.53004 * 109.47302 * 274.99714 * 17 16 14 28 28 C 1.53002 * 109.46686 * 66.16850 * 27 17 16 29 29 H 1.09000 * 109.46421 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47341 * 300.00516 * 1 2 3 31 31 H 1.09000 * 109.46765 * 60.00372 * 1 2 3 32 32 H 1.08992 * 109.47616 * 239.99957 * 2 1 3 33 33 H 1.09003 * 109.47160 * 119.98979 * 2 1 3 34 34 H 1.08000 * 119.99297 * 359.95951 * 5 4 3 35 35 H 1.08991 * 109.47205 * 89.99571 * 7 6 5 36 36 H 1.08996 * 109.46886 * 210.00101 * 7 6 5 37 37 H 1.08996 * 109.46556 * 329.99388 * 7 6 5 38 38 H 1.07994 * 119.91458 * 180.02562 * 8 6 5 39 39 H 1.07996 * 120.01178 * 180.28080 * 9 8 6 40 40 H 0.96998 * 119.99408 * 199.95671 * 11 10 9 41 41 H 0.96997 * 119.99793 * 359.97438 * 16 14 12 42 42 H 0.97000 * 119.99830 * 354.93190 * 22 21 19 43 43 H 1.09001 * 109.46866 * 186.16831 * 27 17 16 44 44 H 1.08997 * 109.46790 * 306.17481 * 27 17 16 45 45 H 1.09002 * 109.47412 * 60.00612 * 28 27 17 46 46 H 1.09001 * 109.46544 * 179.97438 * 28 27 17 47 47 H 1.08991 * 109.47482 * 300.00189 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3542 1.5256 -0.0005 5 6 4.1998 0.4281 -0.0016 6 6 5.5702 0.6109 -0.0027 7 6 6.4876 -0.5847 -0.0032 8 6 6.1016 1.8878 -0.0033 9 6 5.2656 2.9879 -0.0080 10 6 3.8887 2.8127 -0.0016 11 7 3.0402 3.9247 -0.0015 12 6 3.5018 5.1246 -0.4057 13 8 4.6205 5.2206 -0.8668 14 6 2.6370 6.3362 -0.2863 15 8 1.5182 6.2401 0.1743 16 7 3.0983 7.5361 -0.6910 17 6 2.2497 8.7245 -0.5744 18 1 1.6389 8.6480 0.3251 19 6 3.1164 9.9544 -0.4899 20 1 4.1862 9.8705 -0.6120 21 6 2.5437 11.1868 -0.2567 22 7 3.2247 12.2851 -0.5004 23 14 0.8004 11.2962 0.4055 24 1 0.4211 12.7228 0.5673 25 1 -0.1326 10.6413 -0.5462 26 1 0.7267 10.6116 1.7212 27 6 1.3407 8.8245 -1.8011 28 6 0.3559 7.6536 -1.8028 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.7885 -0.5705 -0.0013 35 1 6.7079 -0.8731 -1.0310 36 1 7.4152 -0.3311 0.5098 37 1 6.0031 -1.4146 0.5112 38 1 7.1727 2.0254 -0.0045 39 1 5.6834 3.9838 -0.0130 40 1 2.1195 3.8321 0.2895 41 1 3.9923 7.6127 -1.0595 42 1 4.1537 12.2291 -0.7739 43 1 0.7885 9.7637 -1.7685 44 1 1.9470 8.7906 -2.7063 45 1 -0.2505 7.6874 -0.8977 46 1 -0.2920 7.7251 -2.6765 47 1 0.9080 6.7144 -1.8354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128393520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:38 Heat of formation + Delta-G solvation = -107.118967 kcal Electronic energy + Delta-G solvation = -28837.536819 eV Core-core repulsion = 24791.863969 eV Total energy + Delta-G solvation = -4045.672850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33333 -41.16070 -39.92937 -38.57962 -37.37495 -36.30816 -34.50548 -33.21029 -32.93093 -32.35759 -30.69204 -29.42197 -28.02210 -25.67793 -25.01666 -24.20834 -22.98336 -22.64629 -21.76892 -21.31532 -20.39359 -19.44525 -18.71281 -18.30841 -17.59265 -17.46165 -17.11864 -16.79206 -16.46608 -15.87111 -15.52774 -15.31869 -15.21477 -14.96073 -14.68661 -14.62163 -14.51466 -14.42520 -14.08373 -13.90637 -13.62755 -13.41287 -13.26414 -13.01014 -12.89199 -12.70752 -12.64041 -12.51259 -12.32952 -12.25869 -11.99487 -11.79446 -11.66752 -11.46609 -11.40725 -11.13911 -10.59848 -10.50165 -10.04935 -9.63120 -8.83887 -8.80402 -6.48584 -0.14605 0.34968 0.59304 1.23078 1.46651 1.52276 1.71181 2.05444 2.11710 2.42005 2.63317 2.71287 2.98903 3.36361 3.75199 3.85360 4.07227 4.12401 4.14812 4.23841 4.27573 4.35847 4.35895 4.41873 4.46764 4.58186 4.76083 4.77091 4.87696 4.88664 4.94851 4.98652 5.05372 5.06934 5.11565 5.21673 5.24957 5.29617 5.33930 5.39446 5.49117 5.58411 5.60051 5.80108 5.91282 5.97485 6.31711 6.42803 6.47394 6.67423 6.95281 7.28682 8.56518 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002773 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.746741 B =10095.437313 C =11361.541432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.335 6.335 4 C 0.105 3.895 5 C -0.188 4.188 6 C -0.061 4.061 7 C -0.111 4.111 8 C -0.142 4.142 9 C -0.115 4.115 10 C 0.081 3.919 11 N -0.622 5.622 12 C 0.510 3.490 13 O -0.520 6.520 14 C 0.500 3.500 15 O -0.539 6.539 16 N -0.668 5.668 17 C 0.250 3.750 18 H 0.037 0.963 19 C -0.619 4.619 20 H 0.036 0.964 21 C -0.004 4.004 22 N -0.925 5.925 23 Si 1.072 2.928 24 H -0.283 1.283 25 H -0.238 1.238 26 H -0.270 1.270 27 C -0.138 4.138 28 C -0.137 4.137 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.429 0.571 41 H 0.408 0.592 42 H 0.257 0.743 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 -30.987 0.879 31.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.249 6.249 4 C 0.058 3.942 5 C -0.206 4.206 6 C -0.062 4.062 7 C -0.167 4.167 8 C -0.160 4.160 9 C -0.135 4.135 10 C -0.013 4.013 11 N -0.267 5.267 12 C 0.293 3.707 13 O -0.396 6.396 14 C 0.280 3.720 15 O -0.418 6.418 16 N -0.317 5.317 17 C 0.146 3.854 18 H 0.055 0.945 19 C -0.657 4.657 20 H 0.054 0.946 21 C -0.205 4.205 22 N -0.559 5.559 23 Si 0.893 3.107 24 H -0.209 1.209 25 H -0.162 1.162 26 H -0.195 1.195 27 C -0.177 4.177 28 C -0.194 4.194 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.178 0.822 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.267 0.733 41 H 0.243 0.757 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.337 -29.697 1.275 29.816 hybrid contribution 1.791 -0.434 -0.474 1.903 sum -0.546 -30.131 0.801 30.146 Atomic orbital electron populations 1.21827 0.91868 1.04230 1.02997 1.23103 0.96567 0.80229 1.02710 1.86030 1.17956 1.32093 1.88849 1.18676 0.83595 0.91986 0.99953 1.21224 0.93329 0.98042 1.08048 1.20138 0.93842 0.95798 0.96457 1.20854 0.98261 0.94164 1.03452 1.21138 1.00590 0.91202 1.03111 1.21524 0.90740 1.01714 0.99499 1.17418 0.90459 0.83974 1.09430 1.42870 1.15979 1.05973 1.61888 1.20290 0.87080 0.84782 0.78573 1.90652 1.20135 1.85743 1.43113 1.19929 0.87043 0.84772 0.80302 1.90721 1.19747 1.85855 1.45479 1.46025 1.19395 1.06682 1.59622 1.19023 0.89815 0.81538 0.94990 0.94504 1.22246 0.94197 0.93672 1.55604 0.94557 1.26944 1.09212 0.91228 0.93091 1.70977 1.10803 1.30450 1.43718 0.83731 0.72053 0.76731 0.78148 1.20876 1.16231 1.19507 1.22284 0.97521 0.99036 0.98835 1.21804 0.98757 0.97542 1.01302 0.87839 0.92068 0.92338 0.90692 0.90393 0.82171 0.89962 0.90413 0.89954 0.83780 0.84184 0.73291 0.75671 0.93342 0.91418 0.92819 0.93128 0.92063 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.05 0.60 5.46 71.98 0.39 0.99 16 3 O -0.33 -7.07 9.50 -93.06 -0.88 -7.96 16 4 C 0.11 2.41 6.70 22.62 0.15 2.56 16 5 C -0.19 -3.23 8.69 22.35 0.19 -3.03 16 6 C -0.06 -1.04 5.88 -19.85 -0.12 -1.15 16 7 C -0.11 -1.05 10.01 71.24 0.71 -0.34 16 8 C -0.14 -2.98 9.69 22.27 0.22 -2.76 16 9 C -0.11 -3.16 8.78 22.39 0.20 -2.96 16 10 C 0.08 2.28 6.51 38.26 0.25 2.53 16 11 N -0.62 -18.82 5.30 -304.50 -1.62 -20.43 16 12 C 0.51 17.82 7.73 87.23 0.67 18.49 16 13 O -0.52 -19.33 13.39 -3.35 -0.04 -19.38 16 14 C 0.50 19.45 6.51 87.23 0.57 20.02 16 15 O -0.54 -21.96 13.63 -3.30 -0.04 -22.01 16 16 N -0.67 -28.25 5.03 -447.55 -2.25 -30.50 16 17 C 0.25 11.80 1.81 44.25 0.08 11.88 16 18 H 0.04 1.83 6.25 -2.39 -0.01 1.82 16 19 C -0.62 -34.08 9.01 25.60 0.23 -33.85 16 20 H 0.04 2.15 7.96 -2.91 -0.02 2.13 16 21 C 0.00 -0.22 5.31 84.66 0.45 0.23 16 22 N -0.92 -56.13 13.70 21.45 0.29 -55.84 16 23 Si 1.07 49.04 26.27 68.60 1.80 50.84 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 25 H -0.24 -9.69 5.70 99.48 0.57 -9.12 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C -0.14 -5.93 5.27 30.60 0.16 -5.76 16 28 C -0.14 -5.09 8.54 71.98 0.61 -4.48 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 33 H 0.08 0.72 7.67 -2.39 -0.02 0.70 16 34 H 0.16 1.71 6.30 -2.91 -0.02 1.69 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 37 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 38 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.14 4.41 5.44 -2.91 -0.02 4.39 16 40 H 0.43 12.24 7.74 -92.71 -0.72 11.52 16 41 H 0.41 16.89 7.99 -92.71 -0.74 16.14 16 42 H 0.26 15.76 8.73 -92.71 -0.81 14.95 16 43 H 0.07 2.97 4.79 -2.39 -0.01 2.96 16 44 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.05 1.91 7.91 -2.39 -0.02 1.89 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.04 1.63 5.62 -2.39 -0.01 1.62 16 Total: -1.00 -67.60 380.02 2.15 -65.44 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.62 Total: 38.33 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.51 Total: 1.50 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -3.57 Total: -106.77 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -0.97 Total: -49.35 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.80 Total: 50.84 kcal Total: -67.60 2.15 -65.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128393520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.674 kcal (2) G-P(sol) polarization free energy of solvation -67.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds