Wall clock time and date at job start Tue Mar 31 2020 17:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37097 * 119.99906 * 2 1 4 4 H 1.08004 * 119.99778 * 200.49706 * 3 2 1 5 5 C 1.38947 * 120.00370 * 20.49451 * 3 2 1 6 6 N 1.31416 * 119.99792 * 10.03832 * 5 3 2 7 7 Si 1.86804 * 120.00286 * 190.03770 * 5 3 2 8 8 H 1.48504 * 109.46721 * 94.98175 * 7 5 3 9 9 H 1.48494 * 109.47042 * 214.97943 * 7 5 3 10 10 H 1.48503 * 109.46835 * 334.98369 * 7 5 3 11 11 C 1.34780 * 120.00256 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99470 * 4.66643 * 11 2 1 13 13 C 1.50698 * 120.00075 * 184.67036 * 11 2 1 14 14 H 1.08989 * 109.47256 * 322.39776 * 13 11 2 15 15 N 1.46500 * 109.47016 * 202.39491 * 13 11 2 16 16 C 1.34770 * 119.99935 * 155.00149 * 15 13 11 17 17 O 1.21508 * 120.00267 * 359.97438 * 16 15 13 18 18 O 1.34645 * 119.99919 * 180.02562 * 16 15 13 19 19 C 1.45203 * 116.99847 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46958 * 60.00370 * 19 18 16 21 21 C 1.52997 * 109.46939 * 180.02562 * 19 18 16 22 22 C 1.52998 * 109.47473 * 300.00168 * 19 18 16 23 23 C 1.50697 * 109.47226 * 82.39902 * 13 11 2 24 24 C 1.38240 * 120.00288 * 83.29861 * 23 13 11 25 25 C 1.38236 * 120.00049 * 179.81121 * 24 23 13 26 26 C 1.38237 * 119.99934 * 0.40073 * 25 24 23 27 27 C 1.38231 * 120.00094 * 359.85630 * 26 25 24 28 28 C 1.38235 * 119.99904 * 263.58119 * 23 13 11 29 29 H 1.08995 * 109.47134 * 274.49450 * 1 2 3 30 30 H 1.09004 * 109.46839 * 34.49531 * 1 2 3 31 31 H 1.09000 * 109.47155 * 154.49224 * 1 2 3 32 32 H 0.96993 * 119.99798 * 180.02562 * 6 5 3 33 33 H 0.96998 * 120.00027 * 335.00300 * 15 13 11 34 34 H 1.08992 * 109.47694 * 59.99725 * 20 19 18 35 35 H 1.09001 * 109.47064 * 180.02562 * 20 19 18 36 36 H 1.09010 * 109.47151 * 299.99325 * 20 19 18 37 37 H 1.09002 * 109.47184 * 60.00392 * 21 19 18 38 38 H 1.09004 * 109.47232 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.47401 * 300.00284 * 21 19 18 40 40 H 1.08999 * 109.47065 * 59.99793 * 22 19 18 41 41 H 1.08991 * 109.47501 * 180.02562 * 22 19 18 42 42 H 1.09008 * 109.46798 * 300.00205 * 22 19 18 43 43 H 1.07999 * 119.99738 * 0.02562 * 24 23 13 44 44 H 1.08002 * 119.99997 * 180.23377 * 25 24 23 45 45 H 1.07998 * 119.99669 * 179.83618 * 26 25 24 46 46 H 1.07998 * 120.00092 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.00419 * 359.97310 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1792 1.2169 -0.3275 5 6 1.5217 2.3526 0.4213 6 7 0.3447 2.2908 1.0025 7 14 2.3495 4.0069 0.1615 8 1 1.8538 4.6158 -1.0990 9 1 2.0329 4.9034 1.3022 10 1 3.8197 3.8165 0.0746 11 6 2.1389 -1.1672 0.0005 12 8 1.5354 -2.2159 -0.0845 13 6 3.6422 -1.1693 0.1068 14 1 4.0476 -0.3311 -0.4597 15 7 4.1682 -2.4248 -0.4347 16 6 5.4270 -2.4772 -0.9134 17 8 6.1254 -1.4830 -0.8963 18 8 5.9103 -3.6309 -1.4115 19 6 7.2739 -3.6137 -1.9102 20 6 8.2261 -3.2240 -0.7778 21 6 7.6435 -5.0034 -2.4324 22 6 7.3887 -2.5953 -3.0462 23 6 4.0437 -1.0389 1.5534 24 6 4.0839 -2.1585 2.3633 25 6 4.4560 -2.0395 3.6893 26 6 4.7799 -0.7996 4.2076 27 6 4.7346 0.3208 3.3992 28 6 4.3662 0.2012 2.0721 29 1 -0.3633 0.0805 1.0245 30 1 -0.3633 0.8470 -0.5820 31 1 -0.3633 -0.9275 -0.4425 32 1 -0.0943 3.1043 1.2963 33 1 3.6106 -3.2183 -0.4487 34 1 8.1444 -3.9494 0.0316 35 1 9.2497 -3.2105 -1.1522 36 1 7.9626 -2.2336 -0.4061 37 1 6.9651 -5.2807 -3.2393 38 1 8.6673 -4.9906 -2.8064 39 1 7.5617 -5.7293 -1.6234 40 1 7.1252 -1.6051 -2.6746 41 1 8.4121 -2.5827 -3.4209 42 1 6.7102 -2.8730 -3.8530 43 1 3.8279 -3.1267 1.9591 44 1 4.4910 -2.9147 4.3210 45 1 5.0680 -0.7062 5.2442 46 1 4.9872 1.2895 3.8042 47 1 4.3308 1.0765 1.4406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151405273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:59 Heat of formation + Delta-G solvation = -78.474875 kcal Electronic energy + Delta-G solvation = -30449.631670 eV Core-core repulsion = 26405.200921 eV Total energy + Delta-G solvation = -4044.430749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63738 -39.43797 -37.99762 -36.96583 -35.08273 -34.30185 -33.77071 -31.62994 -30.83596 -30.33210 -27.47919 -27.42610 -27.34509 -25.87085 -24.24628 -22.44814 -21.90896 -21.01831 -19.79000 -19.25483 -18.23879 -17.14316 -16.79867 -16.21227 -15.93148 -15.75352 -15.18322 -14.80495 -14.52468 -14.28296 -14.20417 -14.17262 -13.91314 -13.62076 -13.13763 -12.94605 -12.78285 -12.52544 -12.41250 -12.19091 -12.04338 -11.87341 -11.83329 -11.55264 -11.45961 -11.39975 -11.22653 -11.18463 -10.88898 -10.82085 -10.64694 -10.45776 -10.32383 -10.22111 -9.81237 -9.26680 -9.09813 -8.70288 -8.38447 -8.05048 -7.89942 -6.46728 -4.08649 1.78953 1.94094 2.41698 3.03274 3.15027 3.15942 3.17031 3.67566 3.97751 4.27781 4.35983 4.73182 4.76737 4.84771 4.91701 4.94659 5.30314 5.34992 5.42247 5.45767 5.51448 5.60844 5.64702 5.66130 5.74428 5.86662 5.87748 5.94281 5.95715 6.06133 6.10620 6.32051 6.33375 6.43381 6.51287 6.62039 6.70201 6.80577 6.91770 6.98574 6.99231 7.17567 7.27167 7.31607 7.49234 7.60942 7.83838 8.21197 8.72064 8.91592 9.31438 9.70904 10.53312 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.004266 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.180416 B = 6562.048957 C = 7059.926479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.424 5.424 3 C -0.341 4.341 4 H 0.099 0.901 5 C 0.045 3.955 6 N -0.863 5.863 7 Si 0.918 3.082 8 H -0.275 1.275 9 H -0.280 1.280 10 H -0.265 1.265 11 C 0.451 3.549 12 O -0.607 6.607 13 C 0.201 3.799 14 H 0.116 0.884 15 N -0.688 5.688 16 C 0.653 3.347 17 O -0.568 6.568 18 O -0.366 6.366 19 C 0.136 3.864 20 C -0.183 4.183 21 C -0.140 4.140 22 C -0.184 4.184 23 C -0.074 4.074 24 C -0.101 4.101 25 C -0.132 4.132 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.076 4.076 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.271 0.729 33 H 0.412 0.588 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.645 -7.263 -1.014 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.140 5.140 3 C -0.469 4.469 4 H 0.117 0.883 5 C -0.162 4.162 6 N -0.500 5.500 7 Si 0.744 3.256 8 H -0.201 1.201 9 H -0.206 1.206 10 H -0.189 1.189 11 C 0.238 3.762 12 O -0.495 6.495 13 C 0.094 3.906 14 H 0.133 0.867 15 N -0.348 5.348 16 C 0.405 3.595 17 O -0.457 6.457 18 O -0.281 6.281 19 C 0.099 3.901 20 C -0.240 4.240 21 C -0.197 4.197 22 C -0.241 4.241 23 C -0.076 4.076 24 C -0.119 4.119 25 C -0.150 4.150 26 C -0.142 4.142 27 C -0.144 4.144 28 C -0.094 4.094 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.136 0.864 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.550 -7.138 -1.015 13.615 hybrid contribution 0.044 0.730 0.002 0.731 sum 11.594 -6.408 -1.013 13.286 Atomic orbital electron populations 1.21378 0.79690 0.98919 1.02022 1.43487 1.06063 1.04369 1.60052 1.19678 0.98538 0.84381 1.44317 0.88339 1.25291 0.96128 0.99927 0.94818 1.70041 1.14848 1.29302 1.35808 0.86042 0.79874 0.81481 0.78252 1.20116 1.20576 1.18900 1.19579 0.87761 0.84412 0.84439 1.90523 1.69265 1.31400 1.58287 1.19447 0.93552 0.85864 0.91709 0.86690 1.44498 1.11631 1.14900 1.63726 1.17960 0.82740 0.81787 0.76965 1.90877 1.57991 1.35514 1.61332 1.86297 1.32445 1.35208 1.74160 1.21991 0.77532 0.96706 0.93828 1.22510 0.98809 1.04607 0.98084 1.21847 1.01751 0.94316 1.01777 1.22521 1.02310 1.01645 0.97627 1.19762 0.99337 0.93955 0.94529 1.20884 0.99129 0.98278 0.93633 1.20957 1.01456 0.97316 0.95274 1.21030 1.01010 0.92994 0.99204 1.21059 1.00997 0.98268 0.94081 1.21139 0.95641 0.97131 0.95523 0.92289 0.91473 0.94460 0.91847 0.75088 0.92310 0.91482 0.89112 0.91534 0.90390 0.91579 0.89118 0.91448 0.92243 0.86621 0.86733 0.86803 0.86405 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.96 8.75 59.85 0.52 3.48 16 2 N -0.42 -10.44 3.02 -122.19 -0.37 -10.81 16 3 C -0.34 -8.25 7.71 -14.93 -0.12 -8.36 16 4 H 0.10 2.29 5.23 -52.48 -0.27 2.01 16 5 C 0.04 1.07 5.17 -17.47 -0.09 0.98 16 6 N -0.86 -21.63 10.41 55.50 0.58 -21.05 16 7 Si 0.92 18.74 29.56 -169.99 -5.03 13.72 16 8 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 9 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 10 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 11 C 0.45 10.67 6.84 -10.98 -0.08 10.60 16 12 O -0.61 -15.23 15.45 5.55 0.09 -15.14 16 13 C 0.20 4.17 1.92 -70.24 -0.14 4.03 16 14 H 0.12 2.49 5.62 -51.94 -0.29 2.20 16 15 N -0.69 -12.82 4.17 -61.02 -0.25 -13.08 16 16 C 0.65 11.72 8.01 54.05 0.43 12.16 16 17 O -0.57 -11.02 11.54 -19.28 -0.22 -11.24 16 18 O -0.37 -5.74 9.94 -40.34 -0.40 -6.14 16 19 C 0.14 1.73 1.13 -90.62 -0.10 1.63 16 20 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 21 C -0.14 -1.32 8.85 37.16 0.33 -0.99 16 22 C -0.18 -2.29 8.37 37.16 0.31 -1.97 16 23 C -0.07 -1.48 4.88 -104.62 -0.51 -1.99 16 24 C -0.10 -1.85 9.32 -39.58 -0.37 -2.22 16 25 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 26 C -0.12 -1.95 10.05 -39.58 -0.40 -2.34 16 27 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 28 C -0.08 -1.47 9.01 -39.58 -0.36 -1.83 16 29 H 0.06 1.48 7.47 -51.93 -0.39 1.09 16 30 H 0.07 1.62 7.04 -51.93 -0.37 1.25 16 31 H 0.04 0.86 7.24 -51.93 -0.38 0.49 16 32 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 33 H 0.41 7.46 7.87 -40.82 -0.32 7.14 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.38 5.88 -51.92 -0.31 1.07 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.38 5.88 -51.93 -0.31 1.07 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.12 2.04 7.61 -52.49 -0.40 1.64 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 47 H 0.13 2.61 6.55 -52.49 -0.34 2.27 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -28.33 379.76 -7.66 -35.99 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -6.73 Total: 15.89 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.04 Total: 6.15 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.05 Total: -44.94 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.54 Total: -32.52 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.33 -7.66 -35.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151405273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.489 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds