Wall clock time and date at job start Tue Mar 31 2020 18:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47196 * 2 1 4 4 N 1.46505 * 109.47240 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99451 * 263.25370 * 4 3 2 6 6 H 1.08002 * 119.99548 * 188.09441 * 5 4 3 7 7 C 1.38949 * 120.00586 * 8.08788 * 5 4 3 8 8 N 1.31412 * 119.99680 * 26.09253 * 7 5 4 9 9 Si 1.86793 * 120.00206 * 206.09294 * 7 5 4 10 10 H 1.48501 * 109.47454 * 84.98744 * 9 7 5 11 11 H 1.48498 * 109.47151 * 204.98432 * 9 7 5 12 12 H 1.48498 * 109.47221 * 324.98672 * 9 7 5 13 13 C 1.34770 * 120.00073 * 83.24664 * 4 3 2 14 14 O 1.21285 * 120.00351 * 0.02562 * 13 4 3 15 15 C 1.50708 * 119.99702 * 180.02562 * 13 4 3 16 16 N 1.46500 * 109.46644 * 180.02562 * 15 13 4 17 17 C 1.34779 * 119.99880 * 179.97438 * 16 15 13 18 18 O 1.21596 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.47534 * 120.00262 * 180.02562 * 17 16 15 20 20 C 1.39707 * 120.18987 * 359.97438 * 19 17 16 21 21 C 1.37788 * 119.90733 * 180.02562 * 20 19 17 22 22 C 1.38549 * 120.29912 * 359.97438 * 21 20 19 23 23 C 1.38057 * 120.39217 * 0.02562 * 22 21 20 24 24 C 1.38709 * 120.08103 * 359.97438 * 23 22 21 25 25 O 1.35654 * 120.14549 * 179.97438 * 24 23 22 26 26 C 1.42902 * 117.00559 * 359.97438 * 25 24 23 27 27 C 1.52997 * 109.47157 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.46674 * 300.00387 * 1 2 3 29 29 H 1.09002 * 109.46898 * 59.99999 * 1 2 3 30 30 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47003 * 240.00068 * 2 1 3 32 32 H 1.08993 * 109.47027 * 120.00153 * 2 1 3 33 33 H 1.08997 * 109.47626 * 60.00195 * 3 2 1 34 34 H 1.09002 * 109.47197 * 299.99818 * 3 2 1 35 35 H 0.97000 * 120.00330 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46678 * 60.00242 * 15 13 4 37 37 H 1.08998 * 109.46942 * 299.99886 * 15 13 4 38 38 H 0.96994 * 120.00563 * 0.02562 * 16 15 13 39 39 H 1.07994 * 120.04515 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.85002 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.80471 * 179.74238 * 22 21 20 42 42 H 1.07995 * 119.95779 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.46383 * 299.99840 * 26 25 24 44 44 H 1.09003 * 109.47011 * 59.99456 * 26 25 24 45 45 H 1.08995 * 109.47166 * 299.99087 * 27 26 25 46 46 H 1.08995 * 109.47044 * 60.00085 * 27 26 25 47 47 H 1.09008 * 109.46789 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5818 1.1783 6 1 5.2629 1.7131 1.1670 7 6 3.5071 1.5541 2.3875 8 7 2.3638 0.9131 2.4812 9 14 4.2129 2.4281 3.8799 10 1 3.8148 3.8584 3.8502 11 1 3.6908 1.7947 5.1173 12 1 5.6942 2.3261 3.8587 13 6 4.1785 1.3054 -1.1600 14 8 3.5717 1.1825 -2.2029 15 6 5.6856 1.3048 -1.1604 16 7 6.1733 1.1433 -2.5324 17 6 7.4983 1.1146 -2.7775 18 8 8.2888 1.2222 -1.8599 19 6 7.9896 0.9525 -4.1592 20 6 7.0848 0.8280 -5.2165 21 6 7.5500 0.6764 -6.5045 22 6 8.9120 0.6473 -6.7569 23 6 9.8170 0.7693 -5.7215 24 6 9.3663 0.9227 -4.4187 25 8 10.2544 1.0421 -3.4002 26 6 11.6417 1.0010 -3.7408 27 6 12.4830 1.1507 -2.4717 28 1 -0.3632 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 1.8861 0.8940 3.3252 36 1 6.0487 0.4810 -0.5460 37 1 6.0493 2.2488 -0.7546 38 1 5.5428 1.0578 -3.2644 39 1 6.0223 0.8505 -5.0244 40 1 6.8498 0.5806 -7.3212 41 1 9.2679 0.5239 -7.7692 42 1 10.8771 0.7453 -5.9262 43 1 11.8703 0.0484 -4.2185 44 1 11.8716 1.8161 -4.4270 45 1 12.2543 2.1036 -1.9944 46 1 12.2531 0.3359 -1.7852 47 1 13.5412 1.1189 -2.7315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154033118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:09 Heat of formation + Delta-G solvation = -75.850535 kcal Electronic energy + Delta-G solvation = -28731.843629 eV Core-core repulsion = 24687.526680 eV Total energy + Delta-G solvation = -4044.316949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.54050 -39.12371 -38.25217 -37.39028 -35.40075 -33.75790 -32.40713 -32.11501 -31.57751 -31.21769 -29.65282 -27.53317 -25.62965 -24.39238 -24.19564 -23.02026 -21.72832 -20.63418 -20.02412 -19.29885 -18.67375 -17.56784 -16.74152 -16.23637 -16.07898 -15.79930 -15.04455 -15.00779 -14.92224 -14.67281 -14.26021 -14.10304 -13.93824 -13.54428 -13.44805 -13.25835 -13.12169 -12.72872 -12.47335 -12.30254 -12.09842 -12.08573 -11.88302 -11.67981 -11.45199 -11.38777 -11.15296 -10.94221 -10.88987 -10.80891 -10.46705 -10.36711 -10.30868 -9.54130 -9.47087 -9.17030 -8.92083 -8.57355 -8.55118 -8.27770 -7.87223 -6.48868 -3.93620 0.83721 1.29118 3.08039 3.08339 3.09846 3.20905 3.23315 3.52184 3.75972 3.92717 4.05357 4.57560 4.65209 4.75733 4.77022 4.86981 4.93924 4.95207 5.05148 5.12416 5.26424 5.31439 5.57937 5.66992 5.68850 5.90890 5.94722 6.06868 6.10604 6.12920 6.14985 6.23540 6.29804 6.32718 6.39516 6.57830 6.61306 6.80372 6.89736 6.93869 7.00524 7.30006 7.33066 7.40381 7.62666 7.74421 8.02516 8.33709 8.67923 8.96955 9.40655 9.80344 10.49752 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.002945 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.279645 B = 9505.877234 C =11375.934460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.139 3.861 4 N -0.427 5.427 5 C -0.348 4.348 6 H 0.104 0.896 7 C 0.044 3.956 8 N -0.845 5.845 9 Si 0.915 3.085 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.439 3.561 14 O -0.614 6.614 15 C 0.121 3.879 16 N -0.710 5.710 17 C 0.554 3.446 18 O -0.527 6.527 19 C -0.165 4.165 20 C -0.045 4.045 21 C -0.169 4.169 22 C -0.058 4.058 23 C -0.225 4.225 24 C 0.185 3.815 25 O -0.277 6.277 26 C 0.049 3.951 27 C -0.151 4.151 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.038 0.962 35 H 0.270 0.730 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.405 0.595 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -0.482 -12.994 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.016 3.984 4 N -0.143 5.143 5 C -0.475 4.475 6 H 0.122 0.878 7 C -0.163 4.163 8 N -0.482 5.482 9 Si 0.741 3.259 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.227 3.773 14 O -0.503 6.503 15 C -0.005 4.005 16 N -0.365 5.365 17 C 0.341 3.659 18 O -0.404 6.404 19 C -0.169 4.169 20 C -0.064 4.064 21 C -0.187 4.187 22 C -0.076 4.076 23 C -0.244 4.244 24 C 0.137 3.863 25 O -0.188 6.188 26 C -0.027 4.027 27 C -0.208 4.208 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.244 0.756 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.854 -0.476 -12.383 17.149 hybrid contribution 0.098 0.281 0.311 0.431 sum 11.952 -0.195 -12.071 16.988 Atomic orbital electron populations 1.21586 0.97473 0.99887 1.00428 1.21730 0.93841 0.98288 1.01946 1.21330 0.79599 0.97050 1.00457 1.43769 1.05761 1.59403 1.05330 1.19737 0.93852 1.50989 0.82927 0.87844 1.25182 0.96268 0.95832 0.99013 1.70151 1.16344 1.34855 1.26814 0.86126 0.79691 0.79853 0.80209 1.20154 1.20969 1.19240 1.19814 0.88715 0.84328 0.84454 1.90486 1.69598 1.58332 1.31897 1.20893 0.93586 1.03340 0.82708 1.45711 1.06580 1.73685 1.10483 1.17910 0.82331 0.77690 0.88018 1.90808 1.55108 1.49305 1.45176 1.19455 0.90834 1.12075 0.94529 1.21332 0.99464 0.93819 0.91793 1.20992 0.95642 1.05295 0.96762 1.21087 0.93025 0.94897 0.98601 1.21206 1.00673 1.10658 0.91821 1.19014 0.88821 0.91535 0.86976 1.86412 1.15391 1.85744 1.31273 1.22865 0.79789 1.00950 0.99067 1.21737 0.98074 1.04043 0.96904 0.92963 0.94373 0.94191 0.94574 0.88856 0.88608 0.94409 0.91907 0.89410 0.89710 0.75641 0.84497 0.85269 0.85522 0.85061 0.92170 0.92182 0.91282 0.91271 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 37.16 0.37 -2.16 16 2 C -0.12 -2.68 5.74 -26.73 -0.15 -2.83 16 3 C 0.14 3.29 4.52 -4.04 -0.02 3.27 16 4 N -0.43 -10.55 2.64 -114.81 -0.30 -10.85 16 5 C -0.35 -8.63 9.25 -14.93 -0.14 -8.77 16 6 H 0.10 2.49 6.47 -52.49 -0.34 2.15 16 7 C 0.04 1.05 4.88 -17.47 -0.09 0.96 16 8 N -0.84 -20.58 8.72 55.50 0.48 -20.09 16 9 Si 0.92 19.06 29.63 -169.99 -5.04 14.02 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.44 10.44 7.65 -10.98 -0.08 10.35 16 14 O -0.61 -15.33 15.36 5.55 0.09 -15.24 16 15 C 0.12 2.57 4.54 -5.19 -0.02 2.55 16 16 N -0.71 -13.47 5.48 -62.53 -0.34 -13.82 16 17 C 0.55 10.49 7.76 -12.47 -0.10 10.40 16 18 O -0.53 -11.55 15.16 -16.60 -0.25 -11.80 16 19 C -0.17 -2.57 5.89 -104.85 -0.62 -3.19 16 20 C -0.05 -0.58 9.54 -39.20 -0.37 -0.95 16 21 C -0.17 -1.73 10.02 -39.63 -0.40 -2.12 16 22 C -0.06 -0.54 10.03 -39.53 -0.40 -0.94 16 23 C -0.22 -2.41 9.03 -39.47 -0.36 -2.77 16 24 C 0.18 2.65 6.70 -38.70 -0.26 2.39 16 25 O -0.28 -4.19 8.21 -40.54 -0.33 -4.52 16 26 C 0.05 0.49 5.46 37.16 0.20 0.69 16 27 C -0.15 -1.38 10.28 37.16 0.38 -0.99 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.09 2.28 6.41 -51.93 -0.33 1.95 16 33 H 0.10 2.35 5.82 -51.93 -0.30 2.05 16 34 H 0.04 0.90 7.63 -51.93 -0.40 0.50 16 35 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 36 H 0.09 1.91 8.02 -51.93 -0.42 1.50 16 37 H 0.08 1.80 7.79 -51.93 -0.40 1.39 16 38 H 0.41 7.24 5.47 -40.82 -0.22 7.02 16 39 H 0.14 1.63 6.40 -52.49 -0.34 1.29 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 43 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 44 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -30.22 384.76 -8.76 -38.98 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.82 Total: 11.64 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.05 Total: 5.88 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.16 Total: -44.76 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.50 Total: -31.56 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.04 Total: 14.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.22 -8.76 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154033118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.867 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds