Wall clock time and date at job start Tue Mar 31 2020 18:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47196 * 2 1 4 4 N 1.46505 * 109.47240 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99451 * 263.25370 * 4 3 2 6 6 H 1.08002 * 119.99548 * 188.09441 * 5 4 3 7 7 C 1.38949 * 120.00586 * 8.08788 * 5 4 3 8 8 N 1.31412 * 119.99680 * 26.09253 * 7 5 4 9 9 Si 1.86793 * 120.00206 * 206.09294 * 7 5 4 10 10 H 1.48501 * 109.47454 * 84.98744 * 9 7 5 11 11 H 1.48498 * 109.47151 * 204.98432 * 9 7 5 12 12 H 1.48498 * 109.47221 * 324.98672 * 9 7 5 13 13 C 1.34770 * 120.00073 * 83.24664 * 4 3 2 14 14 O 1.21285 * 120.00351 * 0.02562 * 13 4 3 15 15 C 1.50708 * 119.99702 * 180.02562 * 13 4 3 16 16 N 1.46500 * 109.46644 * 180.02562 * 15 13 4 17 17 C 1.34779 * 119.99880 * 179.97438 * 16 15 13 18 18 O 1.21596 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.47534 * 120.00262 * 180.02562 * 17 16 15 20 20 C 1.39707 * 120.18987 * 359.97438 * 19 17 16 21 21 C 1.37788 * 119.90733 * 180.02562 * 20 19 17 22 22 C 1.38549 * 120.29912 * 359.97438 * 21 20 19 23 23 C 1.38057 * 120.39217 * 0.02562 * 22 21 20 24 24 C 1.38709 * 120.08103 * 359.97438 * 23 22 21 25 25 O 1.35654 * 120.14549 * 179.97438 * 24 23 22 26 26 C 1.42902 * 117.00559 * 359.97438 * 25 24 23 27 27 C 1.52997 * 109.47157 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.46674 * 300.00387 * 1 2 3 29 29 H 1.09002 * 109.46898 * 59.99999 * 1 2 3 30 30 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47003 * 240.00068 * 2 1 3 32 32 H 1.08993 * 109.47027 * 120.00153 * 2 1 3 33 33 H 1.08997 * 109.47626 * 60.00195 * 3 2 1 34 34 H 1.09002 * 109.47197 * 299.99818 * 3 2 1 35 35 H 0.97000 * 120.00330 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46678 * 60.00242 * 15 13 4 37 37 H 1.08998 * 109.46942 * 299.99886 * 15 13 4 38 38 H 0.96994 * 120.00563 * 0.02562 * 16 15 13 39 39 H 1.07994 * 120.04515 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.85002 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.80471 * 179.74238 * 22 21 20 42 42 H 1.07995 * 119.95779 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.46383 * 299.99840 * 26 25 24 44 44 H 1.09003 * 109.47011 * 59.99456 * 26 25 24 45 45 H 1.08995 * 109.47166 * 299.99087 * 27 26 25 46 46 H 1.08995 * 109.47044 * 60.00085 * 27 26 25 47 47 H 1.09008 * 109.46789 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5818 1.1783 6 1 5.2629 1.7131 1.1670 7 6 3.5071 1.5541 2.3875 8 7 2.3638 0.9131 2.4812 9 14 4.2129 2.4281 3.8799 10 1 3.8148 3.8584 3.8502 11 1 3.6908 1.7947 5.1173 12 1 5.6942 2.3261 3.8587 13 6 4.1785 1.3054 -1.1600 14 8 3.5717 1.1825 -2.2029 15 6 5.6856 1.3048 -1.1604 16 7 6.1733 1.1433 -2.5324 17 6 7.4983 1.1146 -2.7775 18 8 8.2888 1.2222 -1.8599 19 6 7.9896 0.9525 -4.1592 20 6 7.0848 0.8280 -5.2165 21 6 7.5500 0.6764 -6.5045 22 6 8.9120 0.6473 -6.7569 23 6 9.8170 0.7693 -5.7215 24 6 9.3663 0.9227 -4.4187 25 8 10.2544 1.0421 -3.4002 26 6 11.6417 1.0010 -3.7408 27 6 12.4830 1.1507 -2.4717 28 1 -0.3632 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 1.8861 0.8940 3.3252 36 1 6.0487 0.4810 -0.5460 37 1 6.0493 2.2488 -0.7546 38 1 5.5428 1.0578 -3.2644 39 1 6.0223 0.8505 -5.0244 40 1 6.8498 0.5806 -7.3212 41 1 9.2679 0.5239 -7.7692 42 1 10.8771 0.7453 -5.9262 43 1 11.8703 0.0484 -4.2185 44 1 11.8716 1.8161 -4.4270 45 1 12.2543 2.1036 -1.9944 46 1 12.2531 0.3359 -1.7852 47 1 13.5412 1.1189 -2.7315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154033118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:08 Heat of formation + Delta-G solvation = -92.696582 kcal Electronic energy + Delta-G solvation = -28732.574128 eV Core-core repulsion = 24687.526680 eV Total energy + Delta-G solvation = -4045.047449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64515 -40.76281 -39.78253 -38.35758 -37.27179 -35.40034 -34.16561 -33.45760 -32.94238 -32.23906 -30.56011 -29.14896 -27.44425 -26.03160 -25.12141 -24.18598 -22.59762 -22.36378 -21.41668 -21.14240 -19.93734 -18.88200 -18.33952 -17.52503 -17.23396 -17.13321 -16.66694 -16.47707 -16.18716 -16.00012 -15.72084 -15.55247 -15.48812 -15.28090 -14.55446 -14.38431 -14.34778 -14.05566 -14.04451 -13.62294 -13.39253 -13.27145 -13.17458 -12.91275 -12.90792 -12.65828 -12.55050 -12.52590 -12.26921 -12.11020 -12.05136 -11.99400 -11.66088 -11.38118 -10.93404 -10.81223 -10.47503 -10.26565 -10.00561 -9.78562 -9.22940 -8.36432 -5.88028 -0.14510 0.40933 1.38000 1.49134 1.57824 1.84651 1.91772 2.02298 2.24372 2.31320 2.84913 2.97066 3.03616 3.67676 3.78398 3.96888 4.04982 4.09533 4.19215 4.24340 4.36238 4.37878 4.41011 4.42364 4.48950 4.51420 4.53983 4.68422 4.83244 4.84095 4.85922 4.91829 5.07340 5.13807 5.20395 5.24479 5.25040 5.29415 5.33013 5.43124 5.46426 5.55825 5.73254 5.77837 5.85209 6.40407 6.44047 6.58312 7.04832 7.19787 7.49207 7.88347 8.62229 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.002945 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.279645 B = 9505.877234 C =11375.934460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.109 4.109 3 C 0.140 3.860 4 N -0.436 5.436 5 C -0.376 4.376 6 H 0.103 0.897 7 C 0.012 3.988 8 N -0.857 5.857 9 Si 0.980 3.020 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.269 1.269 13 C 0.431 3.569 14 O -0.630 6.630 15 C 0.135 3.865 16 N -0.707 5.707 17 C 0.551 3.449 18 O -0.567 6.567 19 C -0.203 4.203 20 C -0.053 4.053 21 C -0.164 4.164 22 C -0.041 4.041 23 C -0.220 4.220 24 C 0.167 3.833 25 O -0.316 6.316 26 C 0.039 3.961 27 C -0.150 4.150 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.033 0.967 35 H 0.276 0.724 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.411 0.589 39 H 0.136 0.864 40 H 0.160 0.840 41 H 0.171 0.829 42 H 0.162 0.838 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.714 -0.556 -15.045 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C 0.017 3.983 4 N -0.151 5.151 5 C -0.502 4.502 6 H 0.121 0.879 7 C -0.193 4.193 8 N -0.493 5.493 9 Si 0.804 3.196 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.194 1.194 13 C 0.220 3.780 14 O -0.520 6.520 15 C 0.008 3.992 16 N -0.362 5.362 17 C 0.341 3.659 18 O -0.447 6.447 19 C -0.206 4.206 20 C -0.071 4.071 21 C -0.182 4.182 22 C -0.059 4.059 23 C -0.238 4.238 24 C 0.118 3.882 25 O -0.228 6.228 26 C -0.035 4.035 27 C -0.207 4.207 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.250 0.750 39 H 0.154 0.846 40 H 0.178 0.822 41 H 0.188 0.812 42 H 0.179 0.821 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.753 -0.559 -14.454 19.284 hybrid contribution -0.156 0.268 0.872 0.926 sum 12.597 -0.291 -13.581 18.526 Atomic orbital electron populations 1.21503 0.94371 1.01453 1.01110 1.21584 0.96527 0.96765 0.99917 1.21332 0.79426 0.97821 0.99700 1.43970 1.06246 1.59257 1.05656 1.19950 0.94189 1.52630 0.83448 0.87937 1.25906 0.96699 0.95687 1.01033 1.70214 1.16916 1.34525 1.27690 0.85151 0.78811 0.78592 0.77069 1.19879 1.20355 1.19383 1.20140 0.89589 0.84135 0.84130 1.90451 1.70181 1.59116 1.32272 1.20596 0.91923 1.02624 0.84101 1.45670 1.07082 1.73971 1.09525 1.18564 0.81576 0.76300 0.89496 1.90764 1.55824 1.51292 1.46853 1.19353 0.92361 1.16048 0.92882 1.21426 0.99081 0.94174 0.92457 1.21387 0.96981 1.03683 0.96166 1.21631 0.92290 0.91783 1.00187 1.21565 1.02602 1.09340 0.90318 1.19313 0.88284 0.92198 0.88372 1.86368 1.17526 1.86011 1.32928 1.23188 0.77671 1.02801 0.99835 1.21788 1.00017 1.02400 0.96477 0.92728 0.93180 0.92210 0.96217 0.91024 0.89368 0.94826 0.91411 0.90515 0.90134 0.75014 0.84642 0.82219 0.81203 0.82083 0.90174 0.90128 0.92904 0.92963 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.11 -4.97 5.74 30.59 0.18 -4.79 16 3 C 0.14 6.80 4.52 86.38 0.39 7.19 16 4 N -0.44 -22.25 2.64 -635.54 -1.68 -23.93 16 5 C -0.38 -19.15 9.25 84.04 0.78 -18.37 16 6 H 0.10 5.13 6.47 -2.91 -0.02 5.11 16 7 C 0.01 0.60 4.88 84.93 0.41 1.01 16 8 N -0.86 -41.91 8.72 21.66 0.19 -41.72 16 9 Si 0.98 39.21 29.63 68.60 2.03 41.24 16 10 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 13 C 0.43 21.35 7.65 87.66 0.67 22.02 16 14 O -0.63 -32.40 15.36 -3.04 -0.05 -32.45 16 15 C 0.13 6.05 4.54 85.64 0.39 6.44 16 16 N -0.71 -28.38 5.48 -469.99 -2.57 -30.96 16 17 C 0.55 22.11 7.76 86.69 0.67 22.79 16 18 O -0.57 -26.54 15.16 16.90 0.26 -26.28 16 19 C -0.20 -6.46 5.89 -20.01 -0.12 -6.58 16 20 C -0.05 -1.31 9.54 22.52 0.21 -1.09 16 21 C -0.16 -2.85 10.02 22.24 0.22 -2.63 16 22 C -0.04 -0.59 10.03 22.30 0.22 -0.37 16 23 C -0.22 -4.05 9.03 22.34 0.20 -3.85 16 24 C 0.17 4.71 6.70 22.84 0.15 4.86 16 25 O -0.32 -9.74 8.21 -68.78 -0.56 -10.31 16 26 C 0.04 0.75 5.46 71.98 0.39 1.14 16 27 C -0.15 -2.70 10.28 71.98 0.74 -1.96 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.07 3.57 6.41 -2.39 -0.02 3.55 16 33 H 0.09 4.40 5.82 -2.39 -0.01 4.38 16 34 H 0.03 1.63 7.63 -2.39 -0.02 1.61 16 35 H 0.28 12.65 8.31 -92.71 -0.77 11.88 16 36 H 0.08 3.58 8.02 -2.39 -0.02 3.56 16 37 H 0.08 3.64 7.79 -2.39 -0.02 3.63 16 38 H 0.41 15.41 5.47 -92.71 -0.51 14.91 16 39 H 0.14 3.26 6.40 -2.91 -0.02 3.24 16 40 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.16 1.92 6.30 -2.91 -0.02 1.90 16 43 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 44 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -68.58 384.76 4.33 -64.25 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: 0.48 Total: 38.23 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 6.23 Total: 21.92 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -4.06 Total: -96.61 kcal Atomic # 8 Polarization: -68.68 SS G_CDS: -0.36 Total: -69.04 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -68.58 4.33 -64.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154033118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.447 kcal (2) G-P(sol) polarization free energy of solvation -68.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds