Wall clock time and date at job start Tue Mar 31 2020 17:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37102 * 119.99801 * 2 1 4 4 H 1.07994 * 119.99986 * 203.87735 * 3 2 1 5 5 C 1.38955 * 119.99757 * 23.88517 * 3 2 1 6 6 N 1.31410 * 120.00065 * 11.82805 * 5 3 2 7 7 Si 1.86800 * 119.99703 * 191.83023 * 5 3 2 8 8 H 1.48497 * 109.46869 * 59.99749 * 7 5 3 9 9 H 1.48502 * 109.46867 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47002 * 299.99881 * 7 5 3 11 11 C 1.34775 * 120.00267 * 180.02562 * 2 1 3 12 12 O 1.21295 * 120.00315 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99779 * 359.97438 * 11 2 1 14 14 N 1.46501 * 109.47207 * 180.02562 * 13 11 2 15 15 C 1.34775 * 120.00069 * 270.00419 * 14 13 11 16 16 O 1.21513 * 120.00187 * 5.10932 * 15 14 13 17 17 O 1.34654 * 120.00170 * 185.11410 * 15 14 13 18 18 C 1.45197 * 116.99927 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47302 * 59.99781 * 18 17 15 20 20 C 1.52999 * 109.47029 * 179.97438 * 18 17 15 21 21 C 1.53003 * 109.47279 * 299.99624 * 18 17 15 22 22 C 1.39947 * 119.99906 * 89.99815 * 14 13 11 23 23 C 1.38866 * 120.07004 * 247.40524 * 22 14 13 24 24 C 1.38118 * 119.93231 * 179.97438 * 23 22 14 25 25 C 1.38281 * 120.06406 * 359.97438 * 24 23 22 26 26 C 1.38280 * 120.14629 * 0.04026 * 25 24 23 27 27 C 1.38113 * 120.06399 * 359.96056 * 26 25 24 28 28 H 1.08995 * 109.46940 * 267.88527 * 1 2 3 29 29 H 1.09000 * 109.47174 * 27.88879 * 1 2 3 30 30 H 1.09002 * 109.46762 * 147.88362 * 1 2 3 31 31 H 0.96993 * 119.99691 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47517 * 60.00517 * 13 11 2 33 33 H 1.08994 * 109.47538 * 300.00191 * 13 11 2 34 34 H 1.08998 * 109.46996 * 59.99835 * 19 18 17 35 35 H 1.09004 * 109.47148 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.47472 * 299.99560 * 19 18 17 37 37 H 1.09002 * 109.47300 * 59.99745 * 20 18 17 38 38 H 1.09004 * 109.47202 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.47076 * 300.00047 * 20 18 17 40 40 H 1.08995 * 109.46793 * 60.00234 * 21 18 17 41 41 H 1.08994 * 109.47157 * 180.02562 * 21 18 17 42 42 H 1.09002 * 109.46895 * 300.00161 * 21 18 17 43 43 H 1.08003 * 120.03393 * 359.70672 * 23 22 14 44 44 H 1.07989 * 119.96733 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.92451 * 180.02562 * 25 24 23 46 46 H 1.07996 * 119.96903 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.03588 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1611 1.2274 -0.3786 5 6 1.5449 2.3392 0.4873 6 7 0.4170 2.2557 1.1565 7 14 2.3341 4.0062 0.1910 8 1 2.4440 4.2490 -1.2699 9 1 1.4968 5.0667 0.8070 10 1 3.6884 4.0279 0.7997 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 7 2.3375 -3.5858 -0.0005 15 6 2.7755 -4.0979 -1.1677 16 8 2.4543 -3.5780 -2.2180 17 8 3.5689 -5.1859 -1.1700 18 6 4.0021 -5.6830 -2.4637 19 6 4.7954 -4.5941 -3.1889 20 6 4.8894 -6.9137 -2.2660 21 6 2.7786 -6.0647 -3.2992 22 6 2.7922 -4.1176 1.2115 23 6 4.1215 -3.9650 1.5832 24 6 4.5671 -4.4905 2.7802 25 6 3.6909 -5.1677 3.6084 26 6 2.3667 -5.3216 3.2410 27 6 1.9150 -4.7984 2.0453 28 1 -0.3633 -0.0379 1.0269 29 1 -0.3633 0.9083 -0.4807 30 1 -0.3633 -0.8704 -0.5464 31 1 -0.0058 3.0598 1.4962 32 1 0.7585 -2.5299 -0.8903 33 1 0.7592 -2.5303 0.8896 34 1 5.6670 -4.3222 -2.5936 35 1 5.1210 -4.9675 -4.1598 36 1 4.1637 -3.7171 -3.3297 37 1 4.3246 -7.6896 -1.7491 38 1 5.2143 -7.2871 -3.2372 39 1 5.7610 -6.6413 -1.6709 40 1 2.1468 -5.1877 -3.4400 41 1 3.1038 -6.4383 -4.2701 42 1 2.2134 -6.8405 -2.7826 43 1 4.8071 -3.4396 0.9349 44 1 5.6007 -4.3725 3.0696 45 1 4.0416 -5.5774 4.5441 46 1 1.6849 -5.8514 3.8898 47 1 0.8808 -4.9193 1.7586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155894008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:54 Heat of formation + Delta-G solvation = -64.604716 kcal Electronic energy + Delta-G solvation = -30317.218959 eV Core-core repulsion = 26273.389665 eV Total energy + Delta-G solvation = -4043.829294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.86204 -39.22004 -38.32093 -36.95193 -35.15134 -34.48371 -33.72810 -31.65372 -30.79338 -29.82467 -27.71502 -27.41107 -27.30781 -26.06230 -24.22810 -23.11798 -22.39042 -21.52798 -19.61403 -18.89268 -18.16515 -16.92337 -16.62713 -16.36292 -16.29660 -15.59298 -15.22949 -14.83019 -14.71540 -14.53925 -14.28999 -14.09903 -13.81763 -13.76416 -13.32448 -13.24505 -12.57131 -12.51997 -12.36272 -12.19912 -12.08928 -11.86866 -11.80636 -11.57341 -11.45677 -11.40064 -11.23036 -11.19410 -11.09547 -11.05168 -10.84631 -10.39054 -10.24339 -10.23194 -9.92739 -9.34484 -8.99012 -8.78247 -8.58205 -7.99006 -7.64743 -6.29847 -3.85954 1.40046 1.56240 2.27404 3.09315 3.20726 3.25776 3.30526 3.82769 3.90718 4.02591 4.17836 4.75402 4.78729 4.91867 4.93755 5.06163 5.07937 5.11709 5.22702 5.38946 5.44332 5.54721 5.55322 5.65101 5.67168 5.72399 5.76976 5.78549 5.80703 5.88414 5.91333 5.97734 6.16466 6.26862 6.31956 6.39672 6.46601 6.54972 6.62237 6.65977 6.78225 6.85966 7.09103 7.19672 7.58638 7.66318 8.14501 8.49482 8.60842 9.20916 9.43140 9.98666 10.74613 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.003993 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.997938 B = 7011.398674 C = 8265.028759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.445 5.445 3 C -0.302 4.302 4 H 0.096 0.904 5 C 0.031 3.969 6 N -0.884 5.884 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.435 3.565 12 O -0.576 6.576 13 C 0.121 3.879 14 N -0.531 5.531 15 C 0.664 3.336 16 O -0.556 6.556 17 O -0.356 6.356 18 C 0.134 3.866 19 C -0.184 4.184 20 C -0.138 4.138 21 C -0.182 4.182 22 C 0.147 3.853 23 C -0.089 4.089 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.121 4.121 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.268 0.732 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -18.072 -0.554 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.164 5.164 3 C -0.430 4.430 4 H 0.114 0.886 5 C -0.172 4.172 6 N -0.524 5.524 7 Si 0.753 3.247 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.221 3.779 12 O -0.460 6.460 13 C -0.003 4.003 14 N -0.265 5.265 15 C 0.420 3.580 16 O -0.444 6.444 17 O -0.270 6.270 18 C 0.097 3.903 19 C -0.241 4.241 20 C -0.195 4.195 21 C -0.240 4.240 22 C 0.056 3.944 23 C -0.109 4.109 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.134 4.134 27 C -0.141 4.141 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.474 -17.788 -0.893 17.981 hybrid contribution 0.131 1.089 -0.053 1.098 sum 2.605 -16.698 -0.947 16.927 Atomic orbital electron populations 1.21526 0.81207 0.99753 1.00922 1.43524 1.05423 1.04561 1.62935 1.19574 1.00266 0.83977 1.39200 0.88611 1.25324 0.96596 1.00031 0.95245 1.69974 1.18422 1.29592 1.34371 0.85998 0.79023 0.80953 0.78724 1.19925 1.20937 1.19840 1.20272 0.88517 0.84864 0.84201 1.90507 1.13654 1.86725 1.55111 1.21465 0.89976 0.84488 1.04357 1.43703 1.46968 1.33735 1.02068 1.17772 0.77562 0.79025 0.83657 1.90892 1.60996 1.62733 1.29782 1.86352 1.62602 1.42619 1.35464 1.22028 0.94428 0.93867 0.79934 1.22507 1.00987 1.00431 1.00155 1.21826 0.99342 0.95607 1.02734 1.22513 0.98273 1.03505 0.99672 1.17575 0.93120 0.96708 0.86982 1.21391 0.95510 0.97451 0.96550 1.21029 0.99833 0.98143 0.94146 1.21134 0.93722 0.99704 0.99577 1.20922 0.95904 1.00403 0.96162 1.21197 0.99754 0.97966 0.95178 0.92700 0.90641 0.95681 0.92232 0.87836 0.88180 0.92117 0.91455 0.89146 0.91654 0.90384 0.91506 0.89307 0.91355 0.92346 0.85386 0.85874 0.86138 0.85856 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.45 8.47 59.85 0.51 2.95 16 2 N -0.44 -11.60 3.01 -122.19 -0.37 -11.96 16 3 C -0.30 -8.58 9.26 -14.93 -0.14 -8.72 16 4 H 0.10 2.87 7.43 -52.49 -0.39 2.48 16 5 C 0.03 0.83 5.07 -17.47 -0.09 0.74 16 6 N -0.88 -23.64 10.74 55.50 0.60 -23.04 16 7 Si 0.93 21.11 29.57 -169.99 -5.03 16.09 16 8 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 C 0.44 10.89 7.70 -10.99 -0.08 10.80 16 12 O -0.58 -16.28 16.14 5.54 0.09 -16.19 16 13 C 0.12 2.36 4.38 -5.19 -0.02 2.34 16 14 N -0.53 -9.96 2.01 -120.16 -0.24 -10.21 16 15 C 0.66 12.65 7.54 54.05 0.41 13.05 16 16 O -0.56 -11.57 11.51 -19.28 -0.22 -11.79 16 17 O -0.36 -5.89 8.91 -40.36 -0.36 -6.25 16 18 C 0.13 1.80 1.13 -90.62 -0.10 1.70 16 19 C -0.18 -2.58 8.37 37.16 0.31 -2.27 16 20 C -0.14 -1.38 8.85 37.16 0.33 -1.05 16 21 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 22 C 0.15 2.50 4.76 -83.69 -0.40 2.10 16 23 C -0.09 -1.52 9.53 -39.39 -0.38 -1.89 16 24 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 16 25 C -0.12 -1.47 10.04 -39.55 -0.40 -1.87 16 26 C -0.12 -1.38 10.04 -39.61 -0.40 -1.78 16 27 C -0.12 -1.70 9.67 -39.40 -0.38 -2.08 16 28 H 0.05 1.23 7.74 -51.93 -0.40 0.83 16 29 H 0.07 1.78 6.88 -51.93 -0.36 1.43 16 30 H 0.02 0.46 6.52 -51.93 -0.34 0.12 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.10 1.91 6.76 -51.93 -0.35 1.56 16 33 H 0.10 1.70 7.81 -51.93 -0.41 1.30 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.58 5.88 -51.93 -0.31 1.28 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.13 2.42 8.06 -52.48 -0.42 2.00 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -33.43 386.93 -7.68 -41.11 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.06 Total: 6.26 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -0.92 Total: 10.15 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.01 Total: -45.21 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.49 Total: -34.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.43 -7.68 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155894008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.493 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds