Wall clock time and date at job start Tue Mar 31 2020 17:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37102 * 119.99801 * 2 1 4 4 H 1.07994 * 119.99986 * 203.87735 * 3 2 1 5 5 C 1.38955 * 119.99757 * 23.88517 * 3 2 1 6 6 N 1.31410 * 120.00065 * 11.82805 * 5 3 2 7 7 Si 1.86800 * 119.99703 * 191.83023 * 5 3 2 8 8 H 1.48497 * 109.46869 * 59.99749 * 7 5 3 9 9 H 1.48502 * 109.46867 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47002 * 299.99881 * 7 5 3 11 11 C 1.34775 * 120.00267 * 180.02562 * 2 1 3 12 12 O 1.21295 * 120.00315 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99779 * 359.97438 * 11 2 1 14 14 N 1.46501 * 109.47207 * 180.02562 * 13 11 2 15 15 C 1.34775 * 120.00069 * 270.00419 * 14 13 11 16 16 O 1.21513 * 120.00187 * 5.10932 * 15 14 13 17 17 O 1.34654 * 120.00170 * 185.11410 * 15 14 13 18 18 C 1.45197 * 116.99927 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47302 * 59.99781 * 18 17 15 20 20 C 1.52999 * 109.47029 * 179.97438 * 18 17 15 21 21 C 1.53003 * 109.47279 * 299.99624 * 18 17 15 22 22 C 1.39947 * 119.99906 * 89.99815 * 14 13 11 23 23 C 1.38866 * 120.07004 * 247.40524 * 22 14 13 24 24 C 1.38118 * 119.93231 * 179.97438 * 23 22 14 25 25 C 1.38281 * 120.06406 * 359.97438 * 24 23 22 26 26 C 1.38280 * 120.14629 * 0.04026 * 25 24 23 27 27 C 1.38113 * 120.06399 * 359.96056 * 26 25 24 28 28 H 1.08995 * 109.46940 * 267.88527 * 1 2 3 29 29 H 1.09000 * 109.47174 * 27.88879 * 1 2 3 30 30 H 1.09002 * 109.46762 * 147.88362 * 1 2 3 31 31 H 0.96993 * 119.99691 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47517 * 60.00517 * 13 11 2 33 33 H 1.08994 * 109.47538 * 300.00191 * 13 11 2 34 34 H 1.08998 * 109.46996 * 59.99835 * 19 18 17 35 35 H 1.09004 * 109.47148 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.47472 * 299.99560 * 19 18 17 37 37 H 1.09002 * 109.47300 * 59.99745 * 20 18 17 38 38 H 1.09004 * 109.47202 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.47076 * 300.00047 * 20 18 17 40 40 H 1.08995 * 109.46793 * 60.00234 * 21 18 17 41 41 H 1.08994 * 109.47157 * 180.02562 * 21 18 17 42 42 H 1.09002 * 109.46895 * 300.00161 * 21 18 17 43 43 H 1.08003 * 120.03393 * 359.70672 * 23 22 14 44 44 H 1.07989 * 119.96733 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.92451 * 180.02562 * 25 24 23 46 46 H 1.07996 * 119.96903 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.03588 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1611 1.2274 -0.3786 5 6 1.5449 2.3392 0.4873 6 7 0.4170 2.2557 1.1565 7 14 2.3341 4.0062 0.1910 8 1 2.4440 4.2490 -1.2699 9 1 1.4968 5.0667 0.8070 10 1 3.6884 4.0279 0.7997 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 7 2.3375 -3.5858 -0.0005 15 6 2.7755 -4.0979 -1.1677 16 8 2.4543 -3.5780 -2.2180 17 8 3.5689 -5.1859 -1.1700 18 6 4.0021 -5.6830 -2.4637 19 6 4.7954 -4.5941 -3.1889 20 6 4.8894 -6.9137 -2.2660 21 6 2.7786 -6.0647 -3.2992 22 6 2.7922 -4.1176 1.2115 23 6 4.1215 -3.9650 1.5832 24 6 4.5671 -4.4905 2.7802 25 6 3.6909 -5.1677 3.6084 26 6 2.3667 -5.3216 3.2410 27 6 1.9150 -4.7984 2.0453 28 1 -0.3633 -0.0379 1.0269 29 1 -0.3633 0.9083 -0.4807 30 1 -0.3633 -0.8704 -0.5464 31 1 -0.0058 3.0598 1.4962 32 1 0.7585 -2.5299 -0.8903 33 1 0.7592 -2.5303 0.8896 34 1 5.6670 -4.3222 -2.5936 35 1 5.1210 -4.9675 -4.1598 36 1 4.1637 -3.7171 -3.3297 37 1 4.3246 -7.6896 -1.7491 38 1 5.2143 -7.2871 -3.2372 39 1 5.7610 -6.6413 -1.6709 40 1 2.1468 -5.1877 -3.4400 41 1 3.1038 -6.4383 -4.2701 42 1 2.2134 -6.8405 -2.7826 43 1 4.8071 -3.4396 0.9349 44 1 5.6007 -4.3725 3.0696 45 1 4.0416 -5.5774 4.5441 46 1 1.6849 -5.8514 3.8898 47 1 0.8808 -4.9193 1.7586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155894008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:53 Heat of formation + Delta-G solvation = -83.840680 kcal Electronic energy + Delta-G solvation = -30318.053093 eV Core-core repulsion = 26273.389665 eV Total energy + Delta-G solvation = -4044.663428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22053 -40.58661 -39.92748 -38.30862 -36.77921 -36.26233 -34.89743 -33.70503 -31.86260 -31.11144 -29.30254 -28.39585 -28.30209 -27.91647 -26.15689 -24.37916 -23.47580 -22.80622 -21.09040 -20.43382 -19.42577 -18.94566 -18.25135 -17.80095 -17.43401 -17.13908 -16.58138 -16.49955 -16.17566 -15.88580 -15.77374 -15.65033 -15.24456 -14.97312 -14.45975 -14.37214 -14.23569 -13.94477 -13.57630 -13.41821 -13.34862 -13.16880 -13.12327 -13.00935 -12.89609 -12.87654 -12.69073 -12.59167 -12.54577 -12.34082 -12.22843 -12.16045 -12.14638 -11.41230 -11.25852 -11.03131 -10.88832 -10.16573 -9.85267 -9.69577 -9.41305 -8.35507 -6.00899 0.30444 0.48767 0.95857 1.36025 1.38040 1.48466 1.66832 1.97206 2.26037 2.69087 2.88833 3.05827 3.08344 3.73881 3.77927 3.92713 3.93244 4.01809 4.08130 4.09064 4.19363 4.29011 4.43999 4.55554 4.57307 4.59345 4.64894 4.65394 4.73231 4.77242 4.81764 4.85840 5.01504 5.02916 5.11997 5.17185 5.26497 5.33796 5.34447 5.41413 5.42425 5.51120 5.59621 5.64260 5.99562 6.06739 6.31471 6.45955 7.13046 7.20753 7.42101 7.98459 8.66599 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.003993 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.997938 B = 7011.398674 C = 8265.028759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.460 5.460 3 C -0.344 4.344 4 H 0.063 0.937 5 C 0.003 3.997 6 N -0.892 5.892 7 Si 0.987 3.013 8 H -0.270 1.270 9 H -0.265 1.265 10 H -0.279 1.279 11 C 0.423 3.577 12 O -0.621 6.621 13 C 0.134 3.866 14 N -0.533 5.533 15 C 0.659 3.341 16 O -0.583 6.583 17 O -0.357 6.357 18 C 0.119 3.881 19 C -0.180 4.180 20 C -0.130 4.130 21 C -0.176 4.176 22 C 0.115 3.885 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.106 4.106 27 C -0.124 4.124 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.275 0.725 32 H 0.114 0.886 33 H 0.130 0.870 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.140 0.860 45 H 0.159 0.841 46 H 0.163 0.837 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -20.225 0.840 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.179 5.179 3 C -0.472 4.472 4 H 0.081 0.919 5 C -0.200 4.200 6 N -0.531 5.531 7 Si 0.810 3.190 8 H -0.195 1.195 9 H -0.189 1.189 10 H -0.204 1.204 11 C 0.211 3.789 12 O -0.508 6.508 13 C 0.009 3.991 14 N -0.267 5.267 15 C 0.415 3.585 16 O -0.474 6.474 17 O -0.272 6.272 18 C 0.083 3.917 19 C -0.237 4.237 20 C -0.187 4.187 21 C -0.233 4.233 22 C 0.025 3.975 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.131 4.131 26 C -0.124 4.124 27 C -0.143 4.143 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.148 0.852 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.158 0.842 45 H 0.177 0.823 46 H 0.181 0.819 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.496 -19.967 0.519 20.030 hybrid contribution 0.485 1.706 -0.446 1.829 sum 1.982 -18.261 0.072 18.368 Atomic orbital electron populations 1.21512 0.79081 1.00736 1.01162 1.43798 1.06856 1.04365 1.62931 1.19474 0.99935 0.86113 1.41647 0.91865 1.26020 0.97032 1.02617 0.94301 1.70027 1.18651 1.30793 1.33593 0.85111 0.78046 0.77085 0.78760 1.19530 1.18887 1.20414 1.21276 0.88439 0.86449 0.82711 1.90471 1.15889 1.87693 1.56725 1.21350 0.89689 0.81898 1.06118 1.43757 1.46794 1.33234 1.02898 1.17997 0.77569 0.79442 0.83475 1.90874 1.62066 1.63660 1.30778 1.86374 1.61810 1.41542 1.37434 1.22520 0.95430 0.94702 0.79025 1.22464 0.99877 0.99484 1.01907 1.21850 0.98416 0.93851 1.04573 1.22448 0.97384 1.02424 1.01048 1.17883 0.93767 0.98690 0.87143 1.21281 0.95444 0.99350 0.97891 1.21281 1.01285 0.97892 0.93125 1.21589 0.93395 0.97941 1.00192 1.21419 0.96546 0.99004 0.95420 1.21457 1.00157 0.97343 0.95347 0.92924 0.92345 0.91675 0.91532 0.86767 0.85217 0.93127 0.88253 0.93167 0.90691 0.87391 0.91875 0.92413 0.88576 0.91273 0.89334 0.84229 0.82320 0.81914 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.28 8.47 127.77 1.08 6.36 16 2 N -0.46 -24.83 3.01 -658.88 -1.99 -26.81 16 3 C -0.34 -20.40 9.26 84.04 0.78 -19.62 16 4 H 0.06 4.07 7.43 -2.91 -0.02 4.05 16 5 C 0.00 0.14 5.07 84.93 0.43 0.57 16 6 N -0.89 -47.66 10.74 21.66 0.23 -47.43 16 7 Si 0.99 43.77 29.57 68.60 2.03 45.80 16 8 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 9 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 C 0.42 22.15 7.70 87.66 0.67 22.82 16 12 O -0.62 -37.61 16.14 -3.08 -0.05 -37.66 16 13 C 0.13 5.30 4.38 85.63 0.37 5.67 16 14 N -0.53 -20.68 2.01 -764.47 -1.54 -22.22 16 15 C 0.66 26.32 7.54 129.79 0.98 27.30 16 16 O -0.58 -25.75 11.51 19.80 0.23 -25.52 16 17 O -0.36 -12.24 8.91 -55.63 -0.50 -12.74 16 18 C 0.12 3.20 1.13 -10.79 -0.01 3.19 16 19 C -0.18 -5.27 8.37 71.98 0.60 -4.66 16 20 C -0.13 -2.36 8.85 71.98 0.64 -1.72 16 21 C -0.18 -4.24 8.37 71.98 0.60 -3.64 16 22 C 0.11 3.97 4.76 38.15 0.18 4.15 16 23 C -0.12 -4.25 9.53 22.39 0.21 -4.04 16 24 C -0.12 -3.13 10.04 22.25 0.22 -2.90 16 25 C -0.11 -2.32 10.04 22.29 0.22 -2.10 16 26 C -0.11 -2.13 10.04 22.25 0.22 -1.91 16 27 C -0.12 -3.22 9.67 22.39 0.22 -3.00 16 28 H 0.05 2.35 7.74 -2.39 -0.02 2.33 16 29 H 0.06 2.78 6.88 -2.39 -0.02 2.76 16 30 H 0.06 2.34 6.52 -2.39 -0.02 2.33 16 31 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 32 H 0.11 4.24 6.76 -2.39 -0.02 4.22 16 33 H 0.13 4.29 7.81 -2.39 -0.02 4.28 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 1.89 5.88 -2.39 -0.01 1.87 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.78 5.88 -2.39 -0.01 1.77 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 3.74 8.06 -2.91 -0.02 3.71 16 44 H 0.14 3.09 8.06 -2.92 -0.02 3.07 16 45 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 47 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -79.02 386.93 6.81 -72.21 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.96 Total: 27.91 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 7.43 Total: 26.46 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.29 Total: -96.46 kcal Atomic # 8 Polarization: -75.60 SS G_CDS: -0.32 Total: -75.92 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -79.02 6.81 -72.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155894008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.632 kcal (2) G-P(sol) polarization free energy of solvation -79.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds