Wall clock time and date at job start Tue Mar 31 2020 17:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46900 * 2 1 4 4 C 1.50694 * 109.47566 * 120.00460 * 2 1 3 5 5 O 1.21285 * 119.99751 * 359.97438 * 4 2 1 6 6 N 1.34783 * 120.00467 * 180.02562 * 4 2 1 7 7 C 1.46494 * 120.00283 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47382 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47229 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47058 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00532 * 180.02562 * 10 9 8 12 12 O 1.21596 * 119.99483 * 0.02562 * 11 10 9 13 13 C 1.47529 * 120.00576 * 179.97438 * 11 10 9 14 14 C 1.39668 * 120.19410 * 0.02562 * 13 11 10 15 15 C 1.37835 * 119.91853 * 179.97438 * 14 13 11 16 16 C 1.38573 * 120.31903 * 0.02562 * 15 14 13 17 17 C 1.38022 * 120.40696 * 0.02562 * 16 15 14 18 18 C 1.38831 * 120.06839 * 359.95623 * 17 16 15 19 19 O 1.35527 * 120.16025 * 180.02562 * 18 17 16 20 20 C 1.34817 * 116.99627 * 354.39561 * 19 18 17 21 21 H 1.07998 * 120.00286 * 5.06815 * 20 19 18 22 22 C 1.38705 * 119.99676 * 185.06799 * 20 19 18 23 23 N 1.31514 * 119.99991 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99619 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47501 * 60.00015 * 24 22 20 26 26 H 1.48510 * 109.46856 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47250 * 299.99489 * 24 22 20 28 28 H 1.09000 * 109.46715 * 299.99372 * 1 2 3 29 29 H 1.09000 * 109.47271 * 59.99462 * 1 2 3 30 30 H 1.09004 * 109.46986 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47208 * 240.00629 * 2 1 3 32 32 H 1.08990 * 109.47048 * 300.00216 * 3 2 1 33 33 H 1.09000 * 109.46923 * 60.00755 * 3 2 1 34 34 H 1.09004 * 109.46904 * 180.02562 * 3 2 1 35 35 H 0.96995 * 119.99312 * 359.97438 * 6 4 2 36 36 H 1.08996 * 109.47548 * 59.99425 * 7 6 4 37 37 H 1.09003 * 109.47069 * 300.00088 * 7 6 4 38 38 H 1.09004 * 109.46986 * 59.99600 * 8 7 6 39 39 H 1.09000 * 109.46715 * 300.00147 * 8 7 6 40 40 H 1.08999 * 109.46796 * 60.00185 * 9 8 7 41 41 H 1.08995 * 109.47178 * 299.99712 * 9 8 7 42 42 H 0.97003 * 120.00039 * 0.02562 * 10 9 8 43 43 H 1.07997 * 120.04248 * 0.26955 * 14 13 11 44 44 H 1.07992 * 119.83718 * 179.97438 * 15 14 13 45 45 H 1.08000 * 119.79251 * 179.97438 * 16 15 14 46 46 H 1.07996 * 119.96390 * 179.97438 * 17 16 15 47 47 H 0.96997 * 120.00153 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 1.2443 -1.1711 2.0289 6 7 3.3576 -0.8332 1.4439 7 6 3.8459 -1.5243 2.6396 8 6 5.3759 -1.5242 2.6397 9 6 5.8859 -2.2455 3.8889 10 7 7.3509 -2.2459 3.8886 11 6 8.0249 -2.8300 4.8990 12 8 7.4170 -3.3571 5.8106 13 6 9.5002 -2.8309 4.8984 14 6 10.2026 -2.2272 3.8531 15 6 11.5810 -2.2309 3.8585 16 6 12.2748 -2.8317 4.8968 17 6 11.5941 -3.4332 5.9360 18 6 10.2059 -3.4387 5.9473 19 8 9.5356 -4.0283 6.9670 20 6 10.2720 -4.6928 7.8802 21 1 11.3503 -4.6688 7.8254 22 6 9.6446 -5.4072 8.8901 23 7 8.3315 -5.4359 8.9572 24 14 10.6649 -6.3272 10.1557 25 1 11.5351 -5.3680 10.8822 26 1 9.7625 -7.0061 11.1203 27 1 11.5080 -7.3396 9.4707 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4426 -0.0005 35 1 3.9878 -0.4645 0.8054 36 1 3.4830 -2.5521 2.6390 37 1 3.4821 -1.0112 3.5299 38 1 5.7392 -0.4965 2.6402 39 1 5.7393 -2.0375 1.7494 40 1 5.5227 -3.2732 3.8887 41 1 5.5226 -1.7318 4.7788 42 1 7.8359 -1.8257 3.1611 43 1 9.6665 -1.7538 3.0438 44 1 12.1228 -1.7640 3.0494 45 1 13.3548 -2.8300 4.8923 46 1 12.1420 -3.8997 6.7412 47 1 7.8927 -5.9358 9.6632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158404696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:20 Heat of formation + Delta-G solvation = -87.855059 kcal Electronic energy + Delta-G solvation = -27438.576967 eV Core-core repulsion = 23393.739463 eV Total energy + Delta-G solvation = -4044.837504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17408 -39.59506 -38.16544 -36.38216 -36.16465 -34.83658 -34.20165 -32.34918 -31.54089 -30.09288 -28.93341 -27.53994 -26.10694 -25.32457 -23.57777 -22.64302 -21.98069 -21.29038 -20.13469 -19.82870 -18.05657 -17.65900 -17.30110 -16.43422 -16.20721 -16.10101 -15.46227 -15.28393 -14.65963 -14.50246 -14.34979 -14.19008 -14.03141 -13.93670 -13.71509 -13.45533 -13.11918 -12.72854 -12.67243 -12.51738 -12.41958 -12.38364 -12.12755 -11.74857 -11.70574 -11.57420 -11.48039 -11.37786 -11.15709 -11.13770 -10.88815 -10.80992 -10.48070 -10.00807 -9.58666 -9.34899 -8.88540 -8.86732 -8.58933 -8.28480 -7.32205 -6.44553 -4.04766 1.70298 2.30509 2.38401 2.83263 3.11608 3.13757 3.16383 3.67069 3.74118 3.93402 4.27542 4.45085 4.53702 4.62621 4.75024 4.75639 4.85009 4.98647 5.06084 5.16607 5.18151 5.27745 5.35395 5.43354 5.44871 5.48915 5.51631 5.52204 5.68448 5.70739 5.73771 5.88513 5.96679 5.98868 6.10344 6.13364 6.15741 6.54737 6.67592 6.89107 6.91703 7.04468 7.18730 7.22632 7.28131 7.68088 7.91406 7.95578 8.09678 8.94636 9.08503 9.66798 10.69098 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.002007 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.709059 B =13947.181347 C =15589.651757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.513 3.487 5 O -0.537 6.537 6 N -0.730 5.730 7 C 0.120 3.880 8 C -0.141 4.141 9 C 0.128 3.872 10 N -0.745 5.745 11 C 0.553 3.447 12 O -0.500 6.500 13 C -0.228 4.228 14 C -0.038 4.038 15 C -0.232 4.232 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.123 6.123 20 C -0.405 4.405 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.391 0.609 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.132 0.868 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 11.913 -19.317 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.299 3.701 5 O -0.413 6.413 6 N -0.383 5.383 7 C -0.004 4.004 8 C -0.179 4.179 9 C 0.003 3.997 10 N -0.401 5.401 11 C 0.343 3.657 12 O -0.373 6.373 13 C -0.233 4.233 14 C -0.057 4.057 15 C -0.251 4.251 16 C -0.069 4.069 17 C -0.257 4.257 18 C 0.129 3.871 19 O -0.021 6.021 20 C -0.480 4.480 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.194 1.194 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.226 0.774 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.044 11.019 -17.754 22.051 hybrid contribution 1.298 -0.046 -0.131 1.305 sum -5.746 10.972 -17.885 21.755 Atomic orbital electron populations 1.21618 0.92426 1.02935 1.02143 1.21318 0.98517 0.97283 0.96564 1.21798 1.01160 0.94190 1.03073 1.20737 0.82081 0.79530 0.87726 1.90729 1.55291 1.48285 1.47030 1.46025 1.07232 1.59218 1.25793 1.21261 0.93169 0.98097 0.87872 1.21966 0.94636 1.01951 0.99356 1.21015 0.81000 1.00866 0.96830 1.45846 1.06011 1.61790 1.26497 1.18237 0.87443 0.78392 0.81645 1.90960 1.69376 1.42591 1.34416 1.18839 0.91792 1.13925 0.98712 1.20744 0.94207 0.95520 0.95249 1.20455 0.93768 1.09515 1.01355 1.20895 0.98684 0.94353 0.93017 1.21158 0.93782 1.08609 1.02145 1.19280 0.90204 0.90456 0.87190 1.84176 1.34164 1.55380 1.28370 1.21453 0.91150 1.29175 1.06254 0.88905 1.25395 0.96125 0.96853 0.97975 1.70114 1.07789 1.36993 1.31402 0.85792 0.78906 0.79376 0.79406 1.19359 1.20149 1.19365 0.91869 0.92036 0.91907 0.88522 0.91330 0.91949 0.92136 0.76601 0.90902 0.90903 0.90654 0.90641 0.91439 0.91450 0.77421 0.87108 0.87302 0.87193 0.85073 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.48 37.16 0.32 -0.62 16 2 C -0.12 -0.73 3.26 -91.77 -0.30 -1.03 16 3 C -0.14 -0.67 9.09 37.16 0.34 -0.33 16 4 C 0.51 5.05 7.15 -10.99 -0.08 4.97 16 5 O -0.54 -7.76 15.98 5.55 0.09 -7.67 16 6 N -0.73 -5.68 5.45 -60.30 -0.33 -6.01 16 7 C 0.12 1.13 5.67 -4.05 -0.02 1.11 16 8 C -0.14 -1.18 5.44 -26.73 -0.15 -1.32 16 9 C 0.13 1.70 5.67 -4.04 -0.02 1.67 16 10 N -0.75 -11.38 5.51 -61.35 -0.34 -11.72 16 11 C 0.55 12.01 7.76 -12.47 -0.10 11.91 16 12 O -0.50 -13.68 15.17 -16.57 -0.25 -13.94 16 13 C -0.23 -4.89 5.89 -104.81 -0.62 -5.50 16 14 C -0.04 -0.64 9.54 -39.20 -0.37 -1.01 16 15 C -0.23 -3.71 10.03 -39.61 -0.40 -4.10 16 16 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 17 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 18 C 0.19 4.66 6.66 -38.60 -0.26 4.41 16 19 O -0.12 -3.63 7.84 -21.08 -0.17 -3.80 16 20 C -0.40 -11.46 9.49 30.90 0.29 -11.16 16 21 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 22 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 23 N -0.83 -25.20 13.67 55.48 0.76 -24.44 16 24 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 35 H 0.40 1.89 7.89 -40.82 -0.32 1.57 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.39 4.57 6.50 -40.82 -0.27 4.30 16 43 H 0.11 1.37 6.40 -52.49 -0.34 1.03 16 44 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -37.72 394.55 -8.47 -46.19 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.94 Total: 6.49 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.22 Total: -6.59 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.09 Total: -42.17 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.33 Total: -25.40 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.72 -8.47 -46.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158404696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.665 kcal (2) G-P(sol) polarization free energy of solvation -37.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds