Wall clock time and date at job start Tue Mar 31 2020 17:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46900 * 2 1 4 4 C 1.50694 * 109.47566 * 120.00460 * 2 1 3 5 5 O 1.21285 * 119.99751 * 359.97438 * 4 2 1 6 6 N 1.34783 * 120.00467 * 180.02562 * 4 2 1 7 7 C 1.46494 * 120.00283 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47382 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47229 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47058 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00532 * 180.02562 * 10 9 8 12 12 O 1.21596 * 119.99483 * 0.02562 * 11 10 9 13 13 C 1.47529 * 120.00576 * 179.97438 * 11 10 9 14 14 C 1.39668 * 120.19410 * 0.02562 * 13 11 10 15 15 C 1.37835 * 119.91853 * 179.97438 * 14 13 11 16 16 C 1.38573 * 120.31903 * 0.02562 * 15 14 13 17 17 C 1.38022 * 120.40696 * 0.02562 * 16 15 14 18 18 C 1.38831 * 120.06839 * 359.95623 * 17 16 15 19 19 O 1.35527 * 120.16025 * 180.02562 * 18 17 16 20 20 C 1.34817 * 116.99627 * 354.39561 * 19 18 17 21 21 H 1.07998 * 120.00286 * 5.06815 * 20 19 18 22 22 C 1.38705 * 119.99676 * 185.06799 * 20 19 18 23 23 N 1.31514 * 119.99991 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99619 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47501 * 60.00015 * 24 22 20 26 26 H 1.48510 * 109.46856 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47250 * 299.99489 * 24 22 20 28 28 H 1.09000 * 109.46715 * 299.99372 * 1 2 3 29 29 H 1.09000 * 109.47271 * 59.99462 * 1 2 3 30 30 H 1.09004 * 109.46986 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47208 * 240.00629 * 2 1 3 32 32 H 1.08990 * 109.47048 * 300.00216 * 3 2 1 33 33 H 1.09000 * 109.46923 * 60.00755 * 3 2 1 34 34 H 1.09004 * 109.46904 * 180.02562 * 3 2 1 35 35 H 0.96995 * 119.99312 * 359.97438 * 6 4 2 36 36 H 1.08996 * 109.47548 * 59.99425 * 7 6 4 37 37 H 1.09003 * 109.47069 * 300.00088 * 7 6 4 38 38 H 1.09004 * 109.46986 * 59.99600 * 8 7 6 39 39 H 1.09000 * 109.46715 * 300.00147 * 8 7 6 40 40 H 1.08999 * 109.46796 * 60.00185 * 9 8 7 41 41 H 1.08995 * 109.47178 * 299.99712 * 9 8 7 42 42 H 0.97003 * 120.00039 * 0.02562 * 10 9 8 43 43 H 1.07997 * 120.04248 * 0.26955 * 14 13 11 44 44 H 1.07992 * 119.83718 * 179.97438 * 15 14 13 45 45 H 1.08000 * 119.79251 * 179.97438 * 16 15 14 46 46 H 1.07996 * 119.96390 * 179.97438 * 17 16 15 47 47 H 0.96997 * 120.00153 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 1.2443 -1.1711 2.0289 6 7 3.3576 -0.8332 1.4439 7 6 3.8459 -1.5243 2.6396 8 6 5.3759 -1.5242 2.6397 9 6 5.8859 -2.2455 3.8889 10 7 7.3509 -2.2459 3.8886 11 6 8.0249 -2.8300 4.8990 12 8 7.4170 -3.3571 5.8106 13 6 9.5002 -2.8309 4.8984 14 6 10.2026 -2.2272 3.8531 15 6 11.5810 -2.2309 3.8585 16 6 12.2748 -2.8317 4.8968 17 6 11.5941 -3.4332 5.9360 18 6 10.2059 -3.4387 5.9473 19 8 9.5356 -4.0283 6.9670 20 6 10.2720 -4.6928 7.8802 21 1 11.3503 -4.6688 7.8254 22 6 9.6446 -5.4072 8.8901 23 7 8.3315 -5.4359 8.9572 24 14 10.6649 -6.3272 10.1557 25 1 11.5351 -5.3680 10.8822 26 1 9.7625 -7.0061 11.1203 27 1 11.5080 -7.3396 9.4707 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4426 -0.0005 35 1 3.9878 -0.4645 0.8054 36 1 3.4830 -2.5521 2.6390 37 1 3.4821 -1.0112 3.5299 38 1 5.7392 -0.4965 2.6402 39 1 5.7393 -2.0375 1.7494 40 1 5.5227 -3.2732 3.8887 41 1 5.5226 -1.7318 4.7788 42 1 7.8359 -1.8257 3.1611 43 1 9.6665 -1.7538 3.0438 44 1 12.1228 -1.7640 3.0494 45 1 13.3548 -2.8300 4.8923 46 1 12.1420 -3.8997 6.7412 47 1 7.8927 -5.9358 9.6632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158404696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:20 Heat of formation + Delta-G solvation = -116.599331 kcal Electronic energy + Delta-G solvation = -27439.823412 eV Core-core repulsion = 23393.739463 eV Total energy + Delta-G solvation = -4046.083950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28212 -40.93288 -39.83422 -38.02165 -37.23779 -35.55470 -35.35343 -34.32608 -32.82122 -31.38274 -30.55299 -28.03833 -27.48927 -26.92629 -24.68472 -23.80474 -23.04624 -22.71853 -21.44725 -20.81150 -19.84319 -19.20171 -18.13174 -17.74831 -17.42976 -17.08020 -16.65695 -16.35614 -16.30013 -15.89444 -15.78870 -15.65481 -15.29872 -15.21048 -14.89639 -14.60814 -14.29788 -14.13867 -13.87121 -13.55985 -13.54872 -13.22839 -13.14570 -12.97686 -12.83107 -12.72308 -12.58281 -12.50005 -12.34064 -12.14987 -12.09713 -12.03703 -11.96681 -11.43174 -10.83010 -10.82284 -10.61319 -10.15360 -10.10206 -9.76648 -9.02536 -8.44656 -6.15796 0.13823 0.74447 1.31578 1.44761 1.49706 1.62922 2.01226 2.10792 2.15846 2.43357 2.88120 3.23649 3.48250 3.67524 3.85913 3.94380 3.96933 4.00859 4.07370 4.10621 4.11527 4.31075 4.47204 4.50290 4.53596 4.56398 4.65595 4.77190 4.78225 4.91215 4.94302 4.98520 5.06443 5.07384 5.08425 5.11950 5.16676 5.30685 5.34479 5.42496 5.49495 5.53550 5.62697 5.71382 5.96019 6.18998 6.55171 6.72381 6.94563 7.26577 7.50343 7.80951 8.75730 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.002007 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.709059 B =13947.181347 C =15589.651757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.141 4.141 4 C 0.505 3.495 5 O -0.594 6.594 6 N -0.713 5.713 7 C 0.122 3.878 8 C -0.116 4.116 9 C 0.123 3.877 10 N -0.714 5.714 11 C 0.545 3.455 12 O -0.572 6.572 13 C -0.246 4.246 14 C -0.027 4.027 15 C -0.200 4.200 16 C -0.041 4.041 17 C -0.259 4.259 18 C 0.147 3.853 19 O -0.190 6.190 20 C -0.427 4.427 21 H 0.107 0.893 22 C -0.024 4.024 23 N -0.906 5.906 24 Si 1.022 2.978 25 H -0.253 1.253 26 H -0.274 1.274 27 H -0.254 1.254 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.420 0.580 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.415 0.585 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.153 0.847 46 H 0.122 0.878 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 14.624 -24.198 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.293 3.707 5 O -0.474 6.474 6 N -0.366 5.366 7 C -0.003 4.003 8 C -0.154 4.154 9 C -0.001 4.001 10 N -0.370 5.370 11 C 0.335 3.665 12 O -0.451 6.451 13 C -0.251 4.251 14 C -0.046 4.046 15 C -0.219 4.219 16 C -0.059 4.059 17 C -0.279 4.279 18 C 0.092 3.908 19 O -0.093 6.093 20 C -0.503 4.503 21 H 0.124 0.876 22 C -0.223 4.223 23 N -0.542 5.542 24 Si 0.841 3.159 25 H -0.177 1.177 26 H -0.199 1.199 27 H -0.178 1.178 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.142 0.858 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.254 0.746 43 H 0.183 0.817 44 H 0.184 0.816 45 H 0.171 0.829 46 H 0.139 0.861 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.531 13.821 -22.784 26.882 hybrid contribution 0.363 -0.612 0.936 1.176 sum -3.168 13.209 -21.848 25.727 Atomic orbital electron populations 1.21640 0.93310 1.01913 1.02429 1.21373 0.97783 0.98340 0.95438 1.21813 1.02264 0.92560 1.03255 1.21517 0.82125 0.78831 0.88219 1.90710 1.56761 1.50746 1.49173 1.45841 1.07149 1.58289 1.25340 1.21079 0.94020 0.97097 0.88128 1.21770 0.93266 1.03058 0.97311 1.21113 0.79733 1.00322 0.98969 1.45519 1.06769 1.59579 1.25148 1.18584 0.88060 0.77952 0.81874 1.90944 1.70696 1.45926 1.37537 1.19316 0.92040 1.14219 0.99489 1.21339 0.95068 0.93656 0.94503 1.21201 0.93529 1.05937 1.01187 1.21444 1.00953 0.92031 0.91453 1.21301 0.92584 1.10145 1.03838 1.20135 0.92208 0.90885 0.87618 1.84183 1.35682 1.58700 1.30697 1.21996 0.91950 1.29605 1.06779 0.87568 1.26783 0.97388 0.97796 1.00362 1.70318 1.10345 1.40208 1.33355 0.84620 0.77092 0.78088 0.76145 1.17717 1.19920 1.17771 0.93831 0.89434 0.93636 0.85768 0.89425 0.93522 0.90361 0.74253 0.92764 0.92770 0.87848 0.87880 0.93575 0.93493 0.74636 0.81694 0.81643 0.82925 0.86054 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.48 71.98 0.61 -1.19 16 2 C -0.11 -1.14 3.26 -11.54 -0.04 -1.18 16 3 C -0.14 -0.88 9.09 71.98 0.65 -0.23 16 4 C 0.51 9.58 7.15 87.65 0.63 10.21 16 5 O -0.59 -17.95 15.98 -3.05 -0.05 -18.00 16 6 N -0.71 -9.68 5.45 -463.07 -2.52 -12.20 16 7 C 0.12 2.23 5.67 86.38 0.49 2.72 16 8 C -0.12 -1.63 5.44 30.59 0.17 -1.46 16 9 C 0.12 3.30 5.67 86.38 0.49 3.79 16 10 N -0.71 -20.82 5.51 -466.29 -2.57 -23.39 16 11 C 0.55 24.35 7.76 86.69 0.67 25.03 16 12 O -0.57 -34.02 15.17 16.88 0.26 -33.76 16 13 C -0.25 -10.44 5.89 -19.99 -0.12 -10.56 16 14 C -0.03 -0.77 9.54 22.52 0.21 -0.55 16 15 C -0.20 -5.01 10.03 22.25 0.22 -4.79 16 16 C -0.04 -1.23 10.03 22.30 0.22 -1.00 16 17 C -0.26 -10.99 9.16 22.36 0.20 -10.79 16 18 C 0.15 7.54 6.66 22.91 0.15 7.69 16 19 O -0.19 -12.18 7.84 0.74 0.01 -12.18 16 20 C -0.43 -26.07 9.49 67.93 0.64 -25.42 16 21 H 0.11 5.78 5.21 -2.91 -0.02 5.77 16 22 C -0.02 -1.46 5.49 84.85 0.47 -0.99 16 23 N -0.91 -60.14 13.67 21.62 0.30 -59.84 16 24 Si 1.02 44.70 29.55 68.60 2.03 46.73 16 25 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 28 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.22 7.56 -2.38 -0.02 0.20 16 35 H 0.42 2.29 7.89 -92.71 -0.73 1.56 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.41 7.81 6.50 -92.71 -0.60 7.21 16 43 H 0.17 2.80 6.40 -2.91 -0.02 2.78 16 44 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 45 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 46 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 47 H 0.27 16.48 8.31 -92.71 -0.77 15.71 16 Total: -1.00 -99.33 394.55 2.80 -96.53 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.33 Total: 24.87 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 5.69 Total: -8.74 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -4.79 Total: -95.44 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: 0.21 Total: -63.95 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -99.33 2.80 -96.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158404696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.072 kcal (2) G-P(sol) polarization free energy of solvation -99.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds