Wall clock time and date at job start Tue Mar 31 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 H 1.09000 * 109.47243 * 289.34326 * 3 2 1 5 5 C 1.50694 * 109.47400 * 169.33992 * 3 2 1 6 6 C 1.38236 * 120.00074 * 298.56048 * 5 3 2 7 7 C 1.38237 * 119.99938 * 179.78166 * 6 5 3 8 8 C 1.38232 * 120.00063 * 0.44600 * 7 6 5 9 9 C 1.38242 * 120.00012 * 359.80732 * 8 7 6 10 10 C 1.38227 * 119.99726 * 359.97438 * 9 8 7 11 11 N 1.46906 * 109.47170 * 49.34198 * 3 2 1 12 12 C 1.46897 * 110.99988 * 40.62818 * 11 3 2 13 13 C 1.50701 * 109.46923 * 196.41433 * 12 11 3 14 14 O 1.21288 * 120.00261 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99706 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99828 * 179.97438 * 15 13 12 17 17 H 1.08004 * 120.00298 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00266 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46850 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47361 * 120.00116 * 20 18 16 23 23 H 1.48500 * 109.46826 * 240.00599 * 20 18 16 24 24 C 1.46895 * 111.00064 * 164.58274 * 11 3 2 25 25 C 1.50698 * 109.47539 * 76.29921 * 24 11 3 26 26 O 1.20828 * 119.99901 * 5.60422 * 25 24 11 27 27 O 1.34228 * 120.00537 * 185.60111 * 25 24 11 28 28 C 1.45198 * 117.00153 * 185.11395 * 27 25 24 29 29 H 1.09004 * 109.47311 * 295.34072 * 1 2 3 30 30 H 1.09002 * 109.47558 * 55.34320 * 1 2 3 31 31 H 1.09007 * 109.47022 * 175.34453 * 1 2 3 32 32 H 1.09004 * 109.47081 * 119.99944 * 2 1 3 33 33 H 1.08996 * 109.47082 * 239.99908 * 2 1 3 34 34 H 1.07995 * 120.00023 * 359.97438 * 6 5 3 35 35 H 1.07995 * 120.00248 * 180.26820 * 7 6 5 36 36 H 1.08005 * 120.00413 * 179.83477 * 8 7 6 37 37 H 1.08003 * 120.00059 * 180.02562 * 9 8 7 38 38 H 1.08001 * 120.00372 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.47094 * 316.40719 * 12 11 3 40 40 H 1.08993 * 109.47300 * 76.40994 * 12 11 3 41 41 H 0.96998 * 120.00233 * 359.97438 * 15 13 12 42 42 H 0.97001 * 120.00312 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.47271 * 196.30423 * 24 11 3 44 44 H 1.09009 * 109.46889 * 316.30098 * 24 11 3 45 45 H 1.08991 * 109.47245 * 64.83355 * 28 27 25 46 46 H 1.08999 * 109.47006 * 184.83194 * 28 27 25 47 47 H 1.08997 * 109.47199 * 304.82877 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.8402 1.8985 -0.9696 5 6 3.5238 1.4508 0.2628 6 6 4.0179 0.9482 1.4520 7 6 5.3795 0.9516 1.6911 8 6 6.2461 1.4661 0.7451 9 6 5.7515 1.9736 -0.4420 10 6 4.3905 1.9660 -0.6830 11 7 1.3524 2.2050 1.0507 12 6 1.2045 1.4026 2.2722 13 6 0.1696 2.0353 3.1666 14 8 -0.3893 3.0546 2.8207 15 7 -0.1347 1.4684 4.3509 16 6 -1.0758 2.0443 5.1648 17 1 -1.5735 2.9520 4.8568 18 6 -1.3900 1.4596 6.3855 19 7 -0.7848 0.3549 6.7601 20 14 -2.6727 2.2439 7.4941 21 1 -3.2025 3.4710 6.8470 22 1 -3.7839 1.2852 7.7208 23 1 -2.0517 2.5987 8.7956 24 6 2.0529 3.4655 1.3305 25 6 1.7615 4.4565 0.2332 26 8 0.9655 4.1817 -0.6333 27 8 2.3863 5.6444 0.2183 28 6 1.9742 6.5932 -0.8007 29 1 -0.3634 0.4399 0.9288 30 1 -0.3634 0.5844 -0.8453 31 1 -0.3633 -1.0243 -0.0834 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.3406 0.5500 2.1928 35 1 5.7659 0.5550 2.6183 36 1 7.3097 1.4713 0.9330 37 1 6.4287 2.3752 -1.1813 38 1 4.0040 2.3620 -1.6105 39 1 0.8881 0.3934 2.0080 40 1 2.1593 1.3586 2.7959 41 1 0.3120 0.6530 4.6274 42 1 -1.0044 -0.0535 7.6121 43 1 1.7102 3.8678 2.2838 44 1 3.1263 3.2817 1.3784 45 1 0.9390 6.8863 -0.6269 46 1 2.6137 7.4747 -0.7562 47 1 2.0608 6.1308 -1.7840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159652002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:49 Heat of formation + Delta-G solvation = -66.094628 kcal Electronic energy + Delta-G solvation = -30268.962506 eV Core-core repulsion = 26225.068605 eV Total energy + Delta-G solvation = -4043.893901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80047 -39.70859 -38.35297 -36.97591 -35.99708 -33.94861 -32.75533 -31.43980 -31.12012 -30.88029 -29.03504 -27.71494 -26.52590 -24.98113 -23.49302 -22.71122 -22.05011 -20.96985 -19.92231 -19.02189 -17.89508 -17.38423 -17.07092 -16.79873 -16.26670 -16.00781 -15.54143 -15.14731 -14.86987 -14.78725 -14.48827 -13.96136 -13.92580 -13.59513 -13.54758 -13.30817 -13.01597 -12.98672 -12.50071 -12.43839 -12.14629 -11.94666 -11.82305 -11.54282 -11.52717 -11.44246 -11.16727 -11.08403 -10.91778 -10.63816 -10.54998 -10.52223 -10.33631 -10.21817 -10.02316 -9.49395 -9.00942 -8.79793 -8.50125 -7.96312 -7.89825 -6.41163 -3.81578 1.23106 1.31040 2.56070 2.83061 3.16867 3.27796 3.34993 3.65330 3.89556 4.04152 4.24972 4.59892 4.75526 4.89774 4.93290 5.00986 5.05971 5.15812 5.19253 5.21721 5.24499 5.25471 5.38781 5.40026 5.45684 5.52315 5.55826 5.71679 5.77397 5.78819 5.86946 5.91507 5.92880 6.03349 6.16470 6.26255 6.33019 6.37226 6.42741 6.53939 6.59055 6.72239 6.90609 7.09767 7.19953 7.56396 8.07095 8.12140 8.62309 9.19329 9.54892 10.06722 10.76581 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.003832 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.567293 B = 7304.391458 C = 8290.900215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C 0.118 3.882 4 H 0.098 0.902 5 C -0.111 4.111 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.124 4.124 9 C -0.119 4.119 10 C -0.112 4.112 11 N -0.479 5.479 12 C 0.020 3.980 13 C 0.441 3.559 14 O -0.574 6.574 15 N -0.564 5.564 16 C -0.297 4.297 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.927 3.073 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.064 3.936 25 C 0.468 3.532 26 O -0.487 6.487 27 O -0.368 6.368 28 C 0.038 3.962 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.058 0.942 41 H 0.391 0.609 42 H 0.270 0.730 43 H 0.125 0.875 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.790 1.047 -13.177 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C 0.010 3.990 4 H 0.115 0.885 5 C -0.112 4.112 6 C -0.141 4.141 7 C -0.134 4.134 8 C -0.142 4.142 9 C -0.137 4.137 10 C -0.131 4.131 11 N -0.202 5.202 12 C -0.110 4.110 13 C 0.226 3.774 14 O -0.458 6.458 15 N -0.201 5.201 16 C -0.426 4.426 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.543 5.543 20 Si 0.754 3.246 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.065 4.065 25 C 0.310 3.690 26 O -0.372 6.372 27 O -0.285 6.285 28 C -0.056 4.056 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.075 0.925 41 H 0.224 0.776 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.631 1.694 -13.706 18.715 hybrid contribution 0.439 -0.226 0.943 1.064 sum 13.070 1.468 -12.763 18.327 Atomic orbital electron populations 1.21891 0.94165 1.00831 1.04235 1.21722 0.97433 0.94103 1.02176 1.21075 0.85866 0.95076 0.96960 0.88450 1.20769 0.97267 0.98417 0.94784 1.21458 0.95817 0.99666 0.97120 1.21185 0.93390 0.99482 0.99313 1.21147 0.99615 0.99164 0.94255 1.21120 0.95296 0.99888 0.97404 1.21082 0.93304 0.99639 0.99074 1.61461 1.48476 1.02338 1.07913 1.22519 0.98801 0.99063 0.90604 1.19756 0.86974 0.87432 0.83193 1.90547 1.55378 1.25832 1.74002 1.41859 1.37024 1.25447 1.15819 1.19737 1.15725 1.09217 0.97936 0.87888 1.25229 0.98689 0.96119 0.97809 1.69612 1.42751 1.19052 1.22913 0.85832 0.80027 0.79162 0.79529 1.19247 1.20777 1.20807 1.21644 0.98502 0.89267 0.97072 1.23636 0.77939 0.81355 0.86087 1.90616 1.31969 1.77318 1.37329 1.86491 1.61389 1.26065 1.54524 1.23160 1.01230 0.90833 0.90384 0.90542 0.92283 0.93341 0.91558 0.91417 0.85047 0.85939 0.86284 0.86282 0.86347 0.86953 0.92451 0.77566 0.91968 0.85680 0.90590 0.92020 0.88588 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.12 37.16 0.34 -1.82 16 2 C -0.12 -1.45 4.86 -26.73 -0.13 -1.58 16 3 C 0.12 1.63 2.24 -68.86 -0.15 1.47 16 4 H 0.10 1.44 7.03 -51.93 -0.36 1.07 16 5 C -0.11 -1.36 2.90 -104.62 -0.30 -1.66 16 6 C -0.12 -1.46 7.48 -39.58 -0.30 -1.76 16 7 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 8 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 9 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 10 C -0.11 -1.28 9.67 -39.58 -0.38 -1.66 16 11 N -0.48 -7.96 3.22 -230.91 -0.74 -8.70 16 12 C 0.02 0.34 3.03 -4.98 -0.02 0.33 16 13 C 0.44 10.06 7.28 -10.98 -0.08 9.98 16 14 O -0.57 -15.26 14.68 5.55 0.08 -15.18 16 15 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 16 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 17 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 20 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.06 1.06 4.77 -4.98 -0.02 1.04 16 25 C 0.47 8.01 7.75 36.00 0.28 8.29 16 26 O -0.49 -9.36 15.13 -18.75 -0.28 -9.64 16 27 O -0.37 -5.52 10.57 -39.25 -0.41 -5.93 16 28 C 0.04 0.43 10.65 101.05 1.08 1.51 16 29 H 0.08 1.29 5.46 -51.93 -0.28 1.00 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.07 0.78 5.84 -51.93 -0.30 0.48 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.13 1.57 4.67 -52.49 -0.24 1.32 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 1.26 7.95 -52.49 -0.42 0.84 16 39 H 0.11 1.75 3.93 -51.92 -0.20 1.54 16 40 H 0.06 0.87 5.24 -51.93 -0.27 0.60 16 41 H 0.39 9.14 7.90 -40.82 -0.32 8.81 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.13 2.35 6.47 -51.93 -0.34 2.02 16 44 H 0.08 1.13 5.59 -51.92 -0.29 0.84 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.65 7.97 -51.93 -0.41 0.23 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -32.36 376.24 -7.52 -39.88 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.34 Total: 13.74 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.12 Total: 1.54 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.08 Total: -45.96 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.62 Total: -30.75 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.36 -7.52 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159652002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.215 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds