Wall clock time and date at job start Tue Mar 31 2020 17:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 H 1.09000 * 109.47243 * 289.34326 * 3 2 1 5 5 C 1.50694 * 109.47400 * 169.33992 * 3 2 1 6 6 C 1.38236 * 120.00074 * 298.56048 * 5 3 2 7 7 C 1.38237 * 119.99938 * 179.78166 * 6 5 3 8 8 C 1.38232 * 120.00063 * 0.44600 * 7 6 5 9 9 C 1.38242 * 120.00012 * 359.80732 * 8 7 6 10 10 C 1.38227 * 119.99726 * 359.97438 * 9 8 7 11 11 N 1.46906 * 109.47170 * 49.34198 * 3 2 1 12 12 C 1.46897 * 110.99988 * 40.62818 * 11 3 2 13 13 C 1.50701 * 109.46923 * 196.41433 * 12 11 3 14 14 O 1.21288 * 120.00261 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99706 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99828 * 179.97438 * 15 13 12 17 17 H 1.08004 * 120.00298 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00266 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46850 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47361 * 120.00116 * 20 18 16 23 23 H 1.48500 * 109.46826 * 240.00599 * 20 18 16 24 24 C 1.46895 * 111.00064 * 164.58274 * 11 3 2 25 25 C 1.50698 * 109.47539 * 76.29921 * 24 11 3 26 26 O 1.20828 * 119.99901 * 5.60422 * 25 24 11 27 27 O 1.34228 * 120.00537 * 185.60111 * 25 24 11 28 28 C 1.45198 * 117.00153 * 185.11395 * 27 25 24 29 29 H 1.09004 * 109.47311 * 295.34072 * 1 2 3 30 30 H 1.09002 * 109.47558 * 55.34320 * 1 2 3 31 31 H 1.09007 * 109.47022 * 175.34453 * 1 2 3 32 32 H 1.09004 * 109.47081 * 119.99944 * 2 1 3 33 33 H 1.08996 * 109.47082 * 239.99908 * 2 1 3 34 34 H 1.07995 * 120.00023 * 359.97438 * 6 5 3 35 35 H 1.07995 * 120.00248 * 180.26820 * 7 6 5 36 36 H 1.08005 * 120.00413 * 179.83477 * 8 7 6 37 37 H 1.08003 * 120.00059 * 180.02562 * 9 8 7 38 38 H 1.08001 * 120.00372 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.47094 * 316.40719 * 12 11 3 40 40 H 1.08993 * 109.47300 * 76.40994 * 12 11 3 41 41 H 0.96998 * 120.00233 * 359.97438 * 15 13 12 42 42 H 0.97001 * 120.00312 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.47271 * 196.30423 * 24 11 3 44 44 H 1.09009 * 109.46889 * 316.30098 * 24 11 3 45 45 H 1.08991 * 109.47245 * 64.83355 * 28 27 25 46 46 H 1.08999 * 109.47006 * 184.83194 * 28 27 25 47 47 H 1.08997 * 109.47199 * 304.82877 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.8402 1.8985 -0.9696 5 6 3.5238 1.4508 0.2628 6 6 4.0179 0.9482 1.4520 7 6 5.3795 0.9516 1.6911 8 6 6.2461 1.4661 0.7451 9 6 5.7515 1.9736 -0.4420 10 6 4.3905 1.9660 -0.6830 11 7 1.3524 2.2050 1.0507 12 6 1.2045 1.4026 2.2722 13 6 0.1696 2.0353 3.1666 14 8 -0.3893 3.0546 2.8207 15 7 -0.1347 1.4684 4.3509 16 6 -1.0758 2.0443 5.1648 17 1 -1.5735 2.9520 4.8568 18 6 -1.3900 1.4596 6.3855 19 7 -0.7848 0.3549 6.7601 20 14 -2.6727 2.2439 7.4941 21 1 -3.2025 3.4710 6.8470 22 1 -3.7839 1.2852 7.7208 23 1 -2.0517 2.5987 8.7956 24 6 2.0529 3.4655 1.3305 25 6 1.7615 4.4565 0.2332 26 8 0.9655 4.1817 -0.6333 27 8 2.3863 5.6444 0.2183 28 6 1.9742 6.5932 -0.8007 29 1 -0.3634 0.4399 0.9288 30 1 -0.3634 0.5844 -0.8453 31 1 -0.3633 -1.0243 -0.0834 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.3406 0.5500 2.1928 35 1 5.7659 0.5550 2.6183 36 1 7.3097 1.4713 0.9330 37 1 6.4287 2.3752 -1.1813 38 1 4.0040 2.3620 -1.6105 39 1 0.8881 0.3934 2.0080 40 1 2.1593 1.3586 2.7959 41 1 0.3120 0.6530 4.6274 42 1 -1.0044 -0.0535 7.6121 43 1 1.7102 3.8678 2.2838 44 1 3.1263 3.2817 1.3784 45 1 0.9390 6.8863 -0.6269 46 1 2.6137 7.4747 -0.7562 47 1 2.0608 6.1308 -1.7840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159652002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:48 Heat of formation + Delta-G solvation = -86.252599 kcal Electronic energy + Delta-G solvation = -30269.836621 eV Core-core repulsion = 26225.068605 eV Total energy + Delta-G solvation = -4044.768016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99775 -40.90305 -39.88884 -38.26145 -37.28314 -35.91310 -33.98344 -33.26170 -32.24347 -31.72808 -30.33749 -28.94671 -27.59775 -26.77027 -24.80124 -23.65645 -22.94974 -22.20247 -21.34612 -20.50273 -19.79979 -18.69347 -18.25753 -18.14472 -17.49820 -17.18928 -16.83014 -16.40924 -16.17470 -16.09773 -15.87216 -15.59937 -15.11557 -14.97361 -14.75343 -14.39672 -14.23370 -14.16329 -13.80129 -13.58212 -13.47496 -13.34100 -13.06407 -12.94525 -12.82308 -12.70888 -12.60644 -12.37134 -12.12506 -12.11088 -11.90465 -11.78442 -11.72503 -11.64339 -11.45668 -11.30753 -10.31325 -9.96679 -9.83035 -9.65461 -9.24644 -8.43612 -5.91268 0.39239 0.49297 1.21682 1.37311 1.42924 1.56138 1.64320 2.08217 2.30207 2.69655 2.95429 3.22991 3.35889 3.65831 3.77305 3.91147 4.03497 4.09838 4.15455 4.21648 4.24082 4.27922 4.30532 4.32360 4.41719 4.43582 4.51715 4.53791 4.62626 4.66211 4.68268 4.82331 4.88623 5.05282 5.12800 5.15456 5.25543 5.34937 5.44593 5.52000 5.56492 5.61047 5.64006 5.82590 5.96292 6.09563 6.11002 6.64301 6.82033 7.17056 7.60202 8.16613 8.73829 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.003832 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.567293 B = 7304.391458 C = 8290.900215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.125 3.875 4 H 0.084 0.916 5 C -0.120 4.120 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.119 4.119 10 C -0.122 4.122 11 N -0.498 5.498 12 C 0.038 3.962 13 C 0.442 3.558 14 O -0.616 6.616 15 N -0.572 5.572 16 C -0.328 4.328 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.918 5.918 20 Si 0.987 3.013 21 H -0.276 1.276 22 H -0.272 1.272 23 H -0.270 1.270 24 C 0.069 3.931 25 C 0.470 3.530 26 O -0.515 6.515 27 O -0.370 6.370 28 C 0.030 3.970 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.134 0.866 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.902 0.539 -13.435 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C 0.017 3.983 4 H 0.103 0.897 5 C -0.122 4.122 6 C -0.153 4.153 7 C -0.139 4.139 8 C -0.140 4.140 9 C -0.137 4.137 10 C -0.140 4.140 11 N -0.222 5.222 12 C -0.091 4.091 13 C 0.229 3.771 14 O -0.501 6.501 15 N -0.210 5.210 16 C -0.458 4.458 17 H 0.094 0.906 18 C -0.209 4.209 19 N -0.559 5.559 20 Si 0.812 3.188 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.060 4.060 25 C 0.312 3.688 26 O -0.402 6.402 27 O -0.287 6.287 28 C -0.063 4.063 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.098 0.902 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.152 0.848 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.774 1.173 -13.965 20.363 hybrid contribution -0.155 -0.002 0.929 0.942 sum 14.619 1.171 -13.036 19.622 Atomic orbital electron populations 1.21822 0.95557 1.01369 1.01950 1.21725 0.95999 0.93581 1.03672 1.20978 0.87043 0.95154 0.95110 0.89747 1.20569 0.96156 0.99859 0.95597 1.21467 0.96577 1.00311 0.96925 1.21435 0.92929 0.99290 1.00238 1.21489 1.00885 0.97924 0.93686 1.21418 0.94988 0.99224 0.98040 1.21205 0.94012 0.99745 0.99062 1.61360 1.49997 1.02751 1.08092 1.22353 0.97667 0.99037 0.90066 1.20747 0.86913 0.86554 0.82882 1.90516 1.57044 1.27762 1.74818 1.41886 1.37018 1.25737 1.16341 1.19637 1.17416 1.09316 0.99445 0.90592 1.25927 1.00132 0.96460 0.98395 1.69663 1.43335 1.19499 1.23445 0.84950 0.77917 0.78080 0.77872 1.20111 1.19744 1.19560 1.21549 0.99475 0.89326 0.95672 1.23722 0.77428 0.81946 0.85674 1.90596 1.33166 1.77995 1.38461 1.86473 1.60955 1.25667 1.55606 1.23508 1.01829 0.91221 0.89718 0.93692 0.93425 0.91549 0.90566 0.89303 0.85489 0.84368 0.83764 0.83987 0.86147 0.85244 0.90161 0.76982 0.91372 0.88350 0.88643 0.92771 0.84764 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.12 71.98 0.66 -3.52 16 2 C -0.11 -2.65 4.86 30.59 0.15 -2.50 16 3 C 0.12 3.37 2.24 44.17 0.10 3.47 16 4 H 0.08 2.51 7.03 -2.39 -0.02 2.49 16 5 C -0.12 -2.79 2.90 -19.87 -0.06 -2.85 16 6 C -0.13 -2.97 7.48 22.27 0.17 -2.80 16 7 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 8 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 9 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 10 C -0.12 -2.54 9.67 22.27 0.22 -2.32 16 11 N -0.50 -16.82 3.22 -884.46 -2.84 -19.67 16 12 C 0.04 1.32 3.03 85.56 0.26 1.58 16 13 C 0.44 20.85 7.28 87.66 0.64 21.49 16 14 O -0.62 -34.32 14.68 -3.06 -0.04 -34.37 16 15 N -0.57 -28.89 5.29 -306.98 -1.62 -30.52 16 16 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 17 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 18 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 19 N -0.92 -48.86 13.05 21.66 0.28 -48.58 16 20 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.07 2.32 4.77 85.56 0.41 2.73 16 25 C 0.47 16.33 7.75 71.24 0.55 16.89 16 26 O -0.51 -20.27 15.13 21.96 0.33 -19.94 16 27 O -0.37 -10.99 10.57 -51.39 -0.54 -11.53 16 28 C 0.03 0.66 10.65 113.37 1.21 1.87 16 29 H 0.04 1.54 5.46 -2.38 -0.01 1.52 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.08 1.66 5.84 -2.38 -0.01 1.65 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.13 2.83 4.67 -2.91 -0.01 2.82 16 35 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.12 2.40 7.95 -2.91 -0.02 2.38 16 39 H 0.13 4.01 3.93 -2.38 -0.01 4.00 16 40 H 0.08 2.41 5.24 -2.39 -0.01 2.39 16 41 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 42 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 43 H 0.10 3.87 6.47 -2.39 -0.02 3.86 16 44 H 0.10 2.79 5.59 -2.38 -0.01 2.78 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.06 1.35 7.97 -2.39 -0.02 1.34 16 Total: -1.00 -71.74 376.24 4.11 -67.62 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: 0.28 Total: 41.31 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.25 Total: 10.61 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.18 Total: -98.76 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -0.26 Total: -65.84 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.74 4.11 -67.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159652002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.629 kcal (2) G-P(sol) polarization free energy of solvation -71.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds