Wall clock time and date at job start Tue Mar 31 2020 17:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46776 * 35.00022 * 9 8 6 11 11 C 1.52998 * 109.47246 * 155.00083 * 9 8 6 12 12 C 1.50697 * 109.47439 * 295.00322 * 11 9 8 13 13 O 1.21293 * 119.99748 * 359.97438 * 12 11 9 14 14 N 1.34773 * 120.00124 * 180.02562 * 12 11 9 15 15 C 1.37105 * 119.99737 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00266 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99599 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00093 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00321 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46950 * 89.99567 * 19 17 15 21 21 H 1.48492 * 109.47290 * 209.99820 * 19 17 15 22 22 H 1.48504 * 109.46951 * 330.00171 * 19 17 15 23 23 C 1.50696 * 109.47365 * 275.00798 * 9 8 6 24 24 C 1.38236 * 119.99802 * 319.72135 * 23 9 8 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 9 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.47261 * 55.00563 * 11 9 8 40 40 H 1.09000 * 109.47285 * 175.00317 * 11 9 8 41 41 H 0.96998 * 119.99904 * 0.02562 * 14 12 11 42 42 H 0.96995 * 120.00238 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00085 * 359.97438 * 24 23 9 44 44 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 45 45 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 46 46 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 1.6266 -4.5494 1.6070 11 6 2.7030 -4.7855 3.4581 12 6 4.0290 -4.8266 2.7432 13 8 4.1399 -4.3302 1.6421 14 7 5.0913 -5.4156 3.3270 15 6 6.2978 -5.4525 2.6768 16 1 6.3968 -5.0098 1.6967 17 6 7.3932 -6.0594 3.2789 18 7 8.5495 -6.0952 2.6556 19 14 7.2222 -6.8244 4.9745 20 1 6.8227 -8.2481 4.8372 21 1 8.5216 -6.7415 5.6883 22 1 6.1860 -6.0918 5.7459 23 6 0.3204 -4.1331 3.2423 24 6 0.0094 -3.2638 4.2712 25 6 -1.2339 -3.3217 4.8730 26 6 -2.1627 -4.2548 4.4519 27 6 -1.8498 -5.1274 3.4266 28 6 -0.6084 -5.0667 2.8218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 2.8150 -4.2506 4.4011 40 1 2.3650 -5.8028 3.6554 41 1 5.0023 -5.8135 4.2072 42 1 9.3141 -6.5191 3.0757 43 1 0.7366 -2.5375 4.6030 44 1 -1.4783 -2.6396 5.6738 45 1 -3.1330 -4.3017 4.9238 46 1 -2.5758 -5.8562 3.0973 47 1 -0.3637 -5.7487 2.0210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161187590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:10 Heat of formation + Delta-G solvation = -94.452700 kcal Electronic energy + Delta-G solvation = -29522.370262 eV Core-core repulsion = 25477.246663 eV Total energy + Delta-G solvation = -4045.123600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63790 -39.52650 -38.38977 -37.07460 -35.09720 -34.00832 -33.83631 -31.76554 -31.39171 -30.85050 -29.52495 -27.39497 -27.28348 -25.53651 -23.63556 -22.81876 -22.28572 -20.56343 -19.88580 -19.36018 -18.44046 -17.84013 -17.12742 -16.46264 -16.03347 -15.72370 -15.48827 -15.08295 -14.86325 -14.49655 -14.34523 -14.23241 -13.94253 -13.51192 -13.41923 -13.26009 -13.18365 -12.85524 -12.54975 -12.48985 -12.17668 -12.07825 -11.89651 -11.83091 -11.77087 -11.49935 -11.39658 -11.20678 -11.15750 -11.09028 -10.94284 -10.62076 -10.20031 -10.00754 -9.77864 -9.60985 -9.05679 -8.92018 -8.75177 -8.50314 -8.21587 -6.34180 -3.85853 1.29701 1.39233 2.43759 2.99858 3.04618 3.13197 3.22229 3.68382 3.74744 4.07222 4.34575 4.44664 4.77582 4.81288 4.86141 4.90924 4.96196 4.99109 5.08721 5.12789 5.17413 5.44389 5.45564 5.50468 5.54670 5.56557 5.65485 5.68164 5.76696 5.81868 5.91928 5.93598 5.95637 6.00243 6.00962 6.12207 6.29998 6.40746 6.43967 6.47243 6.54763 6.73546 6.78806 6.97264 7.52637 7.73583 8.10782 8.54607 8.72602 8.91294 9.38699 9.77417 10.78798 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.004004 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.523179 B = 6991.080888 C = 9430.609757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.138 3.862 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.661 3.339 7 O -0.570 6.570 8 N -0.686 5.686 9 C 0.226 3.774 10 H 0.108 0.892 11 C -0.142 4.142 12 C 0.445 3.555 13 O -0.565 6.565 14 N -0.588 5.588 15 C -0.306 4.306 16 H 0.120 0.880 17 C 0.042 3.958 18 N -0.880 5.880 19 Si 0.879 3.121 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.090 4.090 24 C -0.104 4.104 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.100 4.100 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.403 0.597 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.371 0.629 42 H 0.274 0.726 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.467 8.527 3.826 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.101 3.899 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.415 3.585 7 O -0.459 6.459 8 N -0.343 5.343 9 C 0.121 3.879 10 H 0.126 0.874 11 C -0.183 4.183 12 C 0.231 3.769 13 O -0.448 6.448 14 N -0.226 5.226 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.161 4.161 18 N -0.520 5.520 19 Si 0.706 3.294 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.092 4.092 24 C -0.123 4.123 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.119 4.119 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.237 0.763 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.204 0.796 42 H 0.084 0.916 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.482 8.602 2.594 21.454 hybrid contribution 0.371 -0.479 1.681 1.787 sum -19.111 8.123 4.274 21.201 Atomic orbital electron populations 1.22505 0.94351 1.05034 1.01954 1.21972 0.93981 0.91395 0.82575 1.21849 1.02456 0.92761 1.02674 1.22508 1.01977 1.03575 0.96020 1.86285 1.71742 1.24037 1.46059 1.17877 0.78507 0.80186 0.81957 1.90848 1.41707 1.70261 1.43079 1.44411 1.54668 1.11676 1.23515 1.19410 0.88484 0.80025 0.99952 0.87386 1.21916 0.94507 1.02414 0.99437 1.19653 0.84958 0.84414 0.87855 1.90621 1.84324 1.49245 1.20573 1.42229 1.10240 1.52134 1.18023 1.19438 0.84299 1.35708 1.04002 0.86287 1.25048 0.95120 0.97633 0.98287 1.69622 1.00742 1.43441 1.38155 0.86682 0.78491 0.80211 0.84065 1.19590 1.20180 1.19455 1.20321 0.96205 0.96391 0.96275 1.20952 0.96828 0.98719 0.95765 1.21093 0.93917 0.98948 1.00189 1.21113 0.99300 0.96177 0.97646 1.21103 0.96687 0.99378 0.96741 1.21041 0.93159 0.98263 0.99429 0.92510 0.91504 0.89289 0.91367 0.90420 0.91721 0.89165 0.91606 0.91925 0.76288 0.89494 0.88227 0.79646 0.91579 0.86296 0.86335 0.86430 0.86153 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.37 37.16 0.31 -1.89 16 2 C 0.14 1.83 1.13 -90.62 -0.10 1.73 16 3 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 4 C -0.18 -2.57 8.37 37.16 0.31 -2.25 16 5 O -0.37 -5.85 9.94 -40.34 -0.40 -6.25 16 6 C 0.66 11.48 8.01 54.06 0.43 11.92 16 7 O -0.57 -10.80 11.54 -19.28 -0.22 -11.02 16 8 N -0.69 -10.85 3.47 -59.87 -0.21 -11.06 16 9 C 0.23 3.46 1.73 -69.09 -0.12 3.34 16 10 H 0.11 1.95 7.25 -51.93 -0.38 1.58 16 11 C -0.14 -2.14 5.22 -27.89 -0.15 -2.28 16 12 C 0.45 9.51 7.64 -10.99 -0.08 9.43 16 13 O -0.57 -14.47 14.93 5.55 0.08 -14.38 16 14 N -0.59 -13.44 5.09 -10.96 -0.06 -13.50 16 15 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 16 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 17 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 18 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 19 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 23 C -0.09 -1.19 4.91 -104.62 -0.51 -1.71 16 24 C -0.10 -1.23 9.32 -39.58 -0.37 -1.60 16 25 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 26 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 27 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 28 C -0.10 -1.24 9.67 -39.59 -0.38 -1.63 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.51 5.88 -51.93 -0.31 1.20 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.40 5.80 8.71 -40.82 -0.36 5.45 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.37 7.44 5.76 -40.82 -0.24 7.20 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.12 1.28 7.73 -52.49 -0.41 0.87 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 47 H 0.12 1.46 8.04 -52.49 -0.42 1.03 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -33.71 388.84 -7.69 -41.40 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -7.03 Total: 18.02 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.77 Total: 1.32 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.51 Total: -49.23 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.54 Total: -31.66 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.71 -7.69 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161187590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.051 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds