Wall clock time and date at job start Tue Mar 31 2020 17:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46776 * 35.00022 * 9 8 6 11 11 C 1.52998 * 109.47246 * 155.00083 * 9 8 6 12 12 C 1.50697 * 109.47439 * 295.00322 * 11 9 8 13 13 O 1.21293 * 119.99748 * 359.97438 * 12 11 9 14 14 N 1.34773 * 120.00124 * 180.02562 * 12 11 9 15 15 C 1.37105 * 119.99737 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00266 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99599 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00093 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00321 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46950 * 89.99567 * 19 17 15 21 21 H 1.48492 * 109.47290 * 209.99820 * 19 17 15 22 22 H 1.48504 * 109.46951 * 330.00171 * 19 17 15 23 23 C 1.50696 * 109.47365 * 275.00798 * 9 8 6 24 24 C 1.38236 * 119.99802 * 319.72135 * 23 9 8 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 9 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.47261 * 55.00563 * 11 9 8 40 40 H 1.09000 * 109.47285 * 175.00317 * 11 9 8 41 41 H 0.96998 * 119.99904 * 0.02562 * 14 12 11 42 42 H 0.96995 * 120.00238 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00085 * 359.97438 * 24 23 9 44 44 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 45 45 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 46 46 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 1.6266 -4.5494 1.6070 11 6 2.7030 -4.7855 3.4581 12 6 4.0290 -4.8266 2.7432 13 8 4.1399 -4.3302 1.6421 14 7 5.0913 -5.4156 3.3270 15 6 6.2978 -5.4525 2.6768 16 1 6.3968 -5.0098 1.6967 17 6 7.3932 -6.0594 3.2789 18 7 8.5495 -6.0952 2.6556 19 14 7.2222 -6.8244 4.9745 20 1 6.8227 -8.2481 4.8372 21 1 8.5216 -6.7415 5.6883 22 1 6.1860 -6.0918 5.7459 23 6 0.3204 -4.1331 3.2423 24 6 0.0094 -3.2638 4.2712 25 6 -1.2339 -3.3217 4.8730 26 6 -2.1627 -4.2548 4.4519 27 6 -1.8498 -5.1274 3.4266 28 6 -0.6084 -5.0667 2.8218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 2.8150 -4.2506 4.4011 40 1 2.3650 -5.8028 3.6554 41 1 5.0023 -5.8135 4.2072 42 1 9.3141 -6.5191 3.0757 43 1 0.7366 -2.5375 4.6030 44 1 -1.4783 -2.6396 5.6738 45 1 -3.1330 -4.3017 4.9238 46 1 -2.5758 -5.8562 3.0973 47 1 -0.3637 -5.7487 2.0210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161187590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:09 Heat of formation + Delta-G solvation = -117.236514 kcal Electronic energy + Delta-G solvation = -29523.358243 eV Core-core repulsion = 25477.246663 eV Total energy + Delta-G solvation = -4046.111580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88689 -40.72066 -39.87099 -38.29216 -36.48335 -35.82779 -35.03609 -33.76980 -32.53649 -31.70194 -30.74305 -28.36651 -28.29024 -27.23297 -25.11998 -23.82069 -23.24756 -21.71700 -21.20875 -21.05354 -20.22084 -19.17862 -18.24197 -17.71354 -17.33551 -17.03853 -16.80816 -16.61521 -15.98526 -15.72068 -15.64915 -15.40773 -15.29190 -14.98915 -14.60074 -14.44290 -14.35918 -14.19661 -13.92147 -13.59715 -13.36179 -13.22874 -13.12709 -12.92656 -12.88043 -12.84672 -12.61888 -12.48285 -12.40232 -12.26345 -12.06548 -11.96452 -11.83894 -11.51122 -11.35695 -11.05801 -10.52799 -10.25730 -10.16386 -9.76467 -9.62149 -8.41125 -6.02140 0.41630 0.55441 1.26202 1.30660 1.36201 1.45046 1.89665 1.95492 2.23375 2.77610 2.96649 3.15125 3.24900 3.76593 3.77162 3.78380 3.81846 3.95591 3.99454 4.20689 4.23387 4.32845 4.41970 4.53421 4.60682 4.61643 4.66008 4.70301 4.74094 4.75478 4.82709 4.87439 4.90864 5.07903 5.10028 5.19181 5.27307 5.29282 5.40354 5.54338 5.60784 5.61935 5.66065 5.75416 5.94926 6.14925 6.45778 6.57833 6.87986 7.39058 7.43439 7.95885 8.76586 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.004004 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.523179 B = 6991.080888 C = 9430.609757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.374 6.374 6 C 0.653 3.347 7 O -0.592 6.592 8 N -0.684 5.684 9 C 0.231 3.769 10 H 0.069 0.931 11 C -0.126 4.126 12 C 0.449 3.551 13 O -0.614 6.614 14 N -0.588 5.588 15 C -0.327 4.327 16 H 0.053 0.947 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.258 1.258 21 H -0.277 1.277 22 H -0.227 1.227 23 C -0.103 4.103 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.119 4.119 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.408 0.592 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.128 0.872 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.297 9.065 7.359 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.289 6.289 6 C 0.406 3.594 7 O -0.483 6.483 8 N -0.341 5.341 9 C 0.126 3.874 10 H 0.088 0.912 11 C -0.166 4.166 12 C 0.237 3.763 13 O -0.498 6.498 14 N -0.229 5.229 15 C -0.456 4.456 16 H 0.071 0.929 17 C -0.213 4.213 18 N -0.576 5.576 19 Si 0.784 3.216 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.150 1.150 23 C -0.104 4.104 24 C -0.129 4.129 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.137 4.137 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.244 0.756 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.226 0.774 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.159 0.841 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.337 9.152 6.143 24.908 hybrid contribution 1.189 -0.576 0.404 1.381 sum -21.148 8.576 6.547 23.741 Atomic orbital electron populations 1.22416 0.93251 1.03610 1.03719 1.22404 0.95045 0.92621 0.81189 1.21877 1.02015 0.90576 1.04628 1.22474 1.00916 1.02227 0.98198 1.86294 1.71925 1.23372 1.47346 1.18123 0.78490 0.80681 0.82061 1.90834 1.42791 1.70850 1.43873 1.44485 1.54464 1.11864 1.23260 1.19270 0.90248 0.79395 0.98442 0.91237 1.21913 0.90009 1.04902 0.99794 1.20841 0.86525 0.81767 0.87185 1.90614 1.85484 1.50627 1.23124 1.42033 1.08999 1.53146 1.18759 1.18985 0.87151 1.36938 1.02554 0.92891 1.26121 0.93830 0.97494 1.03882 1.69810 1.02078 1.44745 1.40979 0.85384 0.79645 0.79624 0.76993 1.18291 1.20169 1.15040 1.20062 0.95038 0.97939 0.97388 1.21100 0.97900 0.98455 0.95475 1.21428 0.93188 0.99193 1.00407 1.21504 1.00366 0.95170 0.96902 1.21378 0.96202 0.99957 0.96674 1.21162 0.94140 0.98542 0.99897 0.91516 0.88884 0.92222 0.92105 0.87586 0.90601 0.92528 0.88547 0.93454 0.75594 0.85645 0.85145 0.77385 0.91192 0.85449 0.83808 0.83606 0.84127 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.37 71.98 0.60 -3.46 16 2 C 0.12 3.27 1.13 -10.79 -0.01 3.26 16 3 C -0.13 -2.52 8.85 71.98 0.64 -1.88 16 4 C -0.18 -5.24 8.37 71.98 0.60 -4.64 16 5 O -0.37 -12.28 9.94 -55.54 -0.55 -12.83 16 6 C 0.65 23.68 8.01 129.79 1.04 24.72 16 7 O -0.59 -23.87 11.54 19.82 0.23 -23.64 16 8 N -0.68 -22.13 3.47 -573.74 -1.99 -24.12 16 9 C 0.23 7.14 1.73 44.24 0.08 7.21 16 10 H 0.07 2.68 7.25 -2.39 -0.02 2.67 16 11 C -0.13 -3.61 5.22 29.85 0.16 -3.45 16 12 C 0.45 19.46 7.64 87.66 0.67 20.13 16 13 O -0.61 -33.32 14.93 -3.07 -0.05 -33.37 16 14 N -0.59 -26.92 5.09 -306.99 -1.56 -28.48 16 15 C -0.33 -18.97 10.16 84.04 0.85 -18.11 16 16 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 17 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 18 N -0.94 -56.39 13.96 21.66 0.30 -56.09 16 19 Si 0.96 38.19 27.74 68.60 1.90 40.10 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 21 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.23 -7.42 6.52 99.48 0.65 -6.77 16 23 C -0.10 -2.61 4.91 -19.87 -0.10 -2.71 16 24 C -0.11 -2.37 9.32 22.27 0.21 -2.16 16 25 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 26 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 27 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 28 C -0.12 -2.85 9.67 22.27 0.22 -2.64 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.78 5.88 -2.38 -0.01 1.77 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 2.03 5.88 -2.38 -0.01 2.02 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.41 11.81 8.71 -92.71 -0.81 11.00 16 39 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.39 14.64 5.76 -92.71 -0.53 14.10 16 42 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.13 2.42 7.73 -2.91 -0.02 2.39 16 44 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 46 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 47 H 0.12 2.85 8.04 -2.91 -0.02 2.83 16 Total: -1.00 -81.99 388.84 3.96 -78.03 By element: Atomic # 1 Polarization: 50.79 SS G_CDS: -0.41 Total: 50.38 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.09 Total: 10.02 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -3.25 Total: -108.69 kcal Atomic # 8 Polarization: -69.47 SS G_CDS: -0.37 Total: -69.84 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.10 kcal Total: -81.99 3.96 -78.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161187590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.209 kcal (2) G-P(sol) polarization free energy of solvation -81.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds