Wall clock time and date at job start Tue Mar 31 2020 18:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47532 * 2 1 4 4 N 1.46501 * 109.47242 * 120.00525 * 2 1 3 5 5 C 1.34780 * 120.00241 * 154.99600 * 4 2 1 6 6 O 1.21281 * 119.99614 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99872 * 179.97438 * 5 4 2 8 8 N 1.46495 * 109.46803 * 179.97438 * 7 5 4 9 9 C 1.46499 * 120.00023 * 269.99993 * 8 7 5 10 10 C 1.34775 * 120.00172 * 90.00017 * 8 7 5 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 8 7 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 8 7 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 8 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09008 * 109.46912 * 299.99987 * 1 2 3 29 29 H 1.08997 * 109.47190 * 59.99445 * 1 2 3 30 30 H 1.08992 * 109.47562 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46831 * 239.99487 * 2 1 3 32 32 H 1.09000 * 109.46986 * 60.00395 * 3 2 1 33 33 H 1.08996 * 109.47216 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46905 * 300.00516 * 3 2 1 35 35 H 0.97005 * 119.99994 * 334.99321 * 4 2 1 36 36 H 1.09002 * 109.47060 * 60.00261 * 7 5 4 37 37 H 1.08991 * 109.47098 * 299.99924 * 7 5 4 38 38 H 1.08999 * 109.47082 * 270.00033 * 9 8 7 39 39 H 1.09003 * 109.47210 * 30.00112 * 9 8 7 40 40 H 1.09004 * 109.47392 * 150.00165 * 9 8 7 41 41 H 1.08998 * 109.46621 * 60.00483 * 12 10 8 42 42 H 1.08996 * 109.47266 * 300.00146 * 12 10 8 43 43 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 44 44 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 47 47 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2403 -1.2594 1.1943 6 8 3.9354 -1.1996 0.2022 7 6 3.7428 -1.9694 2.4249 8 7 5.0855 -2.4971 2.1701 9 6 5.2506 -3.8462 1.6233 10 6 6.1687 -1.7416 2.4387 11 8 6.0320 -0.6249 2.8918 12 6 7.5500 -2.2847 2.1771 13 6 8.5771 -1.2506 2.5598 14 6 9.0826 -1.2235 3.8469 15 6 10.0244 -0.2774 4.2006 16 6 10.4635 0.6477 3.2624 17 8 11.3895 1.5786 3.6070 18 6 11.9272 1.4802 4.8395 19 1 11.5589 0.7375 5.5317 20 6 12.9531 2.3326 5.2185 21 7 13.4021 3.2371 4.3753 22 14 13.6984 2.1958 6.9258 23 1 13.0220 1.1069 7.6754 24 1 15.1474 1.8920 6.8105 25 1 13.5181 3.4802 7.6491 26 6 9.9494 0.6219 1.9726 27 6 9.0120 -0.3303 1.6235 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.4623 -0.7388 1.9895 36 1 3.0703 -2.7913 2.6703 37 1 3.7797 -1.2687 3.2590 38 1 5.3221 -4.5634 2.4409 39 1 4.3924 -4.0924 0.9980 40 1 6.1603 -3.8865 1.0240 41 1 7.6517 -2.5240 1.1186 42 1 7.7042 -3.1863 2.7699 43 1 8.7410 -1.9434 4.5758 44 1 10.4190 -0.2570 5.2057 45 1 14.1195 3.8336 4.6405 46 1 10.2856 1.3428 1.2421 47 1 8.6151 -0.3538 0.6194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171828394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:46 Heat of formation + Delta-G solvation = -72.563578 kcal Electronic energy + Delta-G solvation = -28102.478782 eV Core-core repulsion = 24058.304366 eV Total energy + Delta-G solvation = -4044.174416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48650 -39.41579 -38.67074 -36.57904 -36.18642 -35.25904 -32.46920 -32.11551 -31.32037 -30.05542 -28.83572 -27.56977 -26.92076 -25.84559 -24.89156 -22.17737 -21.87439 -20.94275 -20.54803 -19.11198 -17.89885 -17.60037 -17.07921 -16.92491 -16.68107 -15.83466 -15.33828 -15.23626 -14.55694 -14.50812 -14.41667 -14.20820 -13.77132 -13.60255 -13.42485 -13.32959 -13.22184 -13.07414 -12.74470 -12.67642 -12.61403 -12.48402 -12.37016 -12.12614 -11.78713 -11.71089 -11.43684 -11.30442 -11.21134 -10.77459 -10.65011 -10.52375 -10.36192 -10.24386 -9.66717 -9.38365 -9.24131 -8.78141 -8.75602 -8.05043 -7.07168 -6.38004 -3.96291 2.30387 2.34982 2.43287 2.59774 2.90055 3.15516 3.17805 3.20312 3.23655 4.02584 4.39974 4.50032 4.62593 4.66962 4.75419 4.86477 4.89399 4.96541 5.13429 5.18842 5.21804 5.25923 5.32907 5.34893 5.41233 5.42206 5.44283 5.48752 5.53876 5.74237 5.77749 5.81992 5.96139 5.99695 6.19799 6.25692 6.31324 6.51800 6.79989 7.00867 7.13686 7.21545 7.28146 7.35132 7.46701 7.53492 7.93596 8.00997 8.07732 8.31073 9.07833 9.79840 10.80403 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.002177 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.522963 B =12861.150023 C =13566.031402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 C -0.165 4.165 4 N -0.730 5.730 5 C 0.497 3.503 6 O -0.526 6.526 7 C 0.097 3.903 8 N -0.611 5.611 9 C 0.084 3.916 10 C 0.518 3.482 11 O -0.517 6.517 12 C -0.076 4.076 13 C -0.169 4.169 14 C -0.057 4.057 15 C -0.233 4.233 16 C 0.157 3.843 17 O -0.180 6.180 18 C -0.389 4.389 19 H 0.092 0.908 20 C 0.037 3.963 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.191 4.191 27 C -0.058 4.058 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.268 0.732 46 H 0.116 0.884 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.161 -14.434 -5.483 29.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 C -0.224 4.224 4 N -0.384 5.384 5 C 0.281 3.719 6 O -0.401 6.401 7 C -0.030 4.030 8 N -0.346 5.346 9 C -0.059 4.059 10 C 0.307 3.693 11 O -0.391 6.391 12 C -0.115 4.115 13 C -0.171 4.171 14 C -0.075 4.075 15 C -0.252 4.252 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.167 4.167 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.210 4.210 27 C -0.076 4.076 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.144 0.856 45 H 0.078 0.922 46 H 0.134 0.866 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.407 -13.403 -6.084 28.502 hybrid contribution -0.101 -0.082 1.205 1.212 sum -24.508 -13.484 -4.880 28.395 Atomic orbital electron populations 1.22072 0.94159 1.02458 1.03008 1.20917 0.93778 0.93224 0.88829 1.22193 1.02567 0.95606 1.02019 1.46125 1.18067 1.57390 1.16836 1.21375 0.81136 0.78831 0.90510 1.90712 1.55512 1.58959 1.34885 1.21217 0.85441 1.00024 0.96299 1.47538 1.04520 1.16483 1.66040 1.21778 1.03332 0.82247 0.98549 1.21093 0.86336 0.85173 0.76720 1.90728 1.86354 1.18980 1.43023 1.20416 0.89631 0.98547 1.02948 1.18659 1.02328 1.00942 0.95127 1.20494 0.95374 0.97163 0.94490 1.21094 1.03640 0.99782 1.00679 1.19385 0.89412 0.88158 0.92727 1.83979 1.47191 1.43214 1.33922 1.21373 1.17069 1.19877 0.88253 0.89057 1.25290 0.96034 0.95507 0.99836 1.70053 1.26347 1.18495 1.35033 0.85646 0.78901 0.78525 0.80331 1.19134 1.20199 1.20212 1.20156 1.03170 1.02859 0.94864 1.20425 0.95497 0.93802 0.97917 0.92018 0.90938 0.92076 0.89601 0.92420 0.91828 0.91708 0.76740 0.87804 0.86907 0.92435 0.91456 0.90471 0.88825 0.88995 0.87849 0.85606 0.92163 0.86574 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 9.38 37.16 0.35 -0.40 16 2 C 0.14 1.08 3.18 -67.93 -0.22 0.86 16 3 C -0.17 -1.49 9.48 37.16 0.35 -1.13 16 4 N -0.73 -5.73 5.08 -53.80 -0.27 -6.00 16 5 C 0.50 5.53 7.86 -10.98 -0.09 5.45 16 6 O -0.53 -8.18 16.09 5.56 0.09 -8.09 16 7 C 0.10 0.90 5.89 -5.19 -0.03 0.87 16 8 N -0.61 -6.87 2.36 -182.95 -0.43 -7.30 16 9 C 0.08 0.62 10.24 59.85 0.61 1.23 16 10 C 0.52 7.91 7.67 -10.98 -0.08 7.83 16 11 O -0.52 -10.27 15.61 5.55 0.09 -10.19 16 12 C -0.08 -1.05 4.38 -29.04 -0.13 -1.18 16 13 C -0.17 -3.15 4.38 -104.58 -0.46 -3.61 16 14 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 15 C -0.23 -5.40 9.17 -39.39 -0.36 -5.76 16 16 C 0.16 4.04 6.65 -39.11 -0.26 3.78 16 17 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 18 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 19 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 20 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -26.09 13.67 55.48 0.76 -25.33 16 22 Si 0.94 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.19 -4.42 9.99 -39.39 -0.39 -4.81 16 27 C -0.06 -1.16 9.69 -39.61 -0.38 -1.55 16 28 H 0.06 0.25 8.14 -51.92 -0.42 -0.18 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.83 7.58 -51.93 -0.39 0.43 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 1.88 8.60 -40.82 -0.35 1.53 16 36 H 0.10 0.52 8.07 -51.93 -0.42 0.10 16 37 H 0.11 1.12 7.42 -51.93 -0.39 0.73 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 40 H 0.08 0.56 6.44 -51.93 -0.33 0.22 16 41 H 0.09 1.13 7.34 -51.93 -0.38 0.75 16 42 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 43 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 47 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -38.63 397.98 -7.10 -45.73 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.03 Total: 4.41 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.27 Total: -9.99 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.05 Total: -38.63 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.18 Total: -23.64 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.63 -7.10 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171828394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.833 kcal (2) G-P(sol) polarization free energy of solvation -38.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds