Wall clock time and date at job start Tue Mar 31 2020 18:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47532 * 2 1 4 4 N 1.46501 * 109.47242 * 120.00525 * 2 1 3 5 5 C 1.34780 * 120.00241 * 154.99600 * 4 2 1 6 6 O 1.21281 * 119.99614 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99872 * 179.97438 * 5 4 2 8 8 N 1.46495 * 109.46803 * 179.97438 * 7 5 4 9 9 C 1.46499 * 120.00023 * 269.99993 * 8 7 5 10 10 C 1.34775 * 120.00172 * 90.00017 * 8 7 5 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 8 7 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 8 7 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 8 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09008 * 109.46912 * 299.99987 * 1 2 3 29 29 H 1.08997 * 109.47190 * 59.99445 * 1 2 3 30 30 H 1.08992 * 109.47562 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46831 * 239.99487 * 2 1 3 32 32 H 1.09000 * 109.46986 * 60.00395 * 3 2 1 33 33 H 1.08996 * 109.47216 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46905 * 300.00516 * 3 2 1 35 35 H 0.97005 * 119.99994 * 334.99321 * 4 2 1 36 36 H 1.09002 * 109.47060 * 60.00261 * 7 5 4 37 37 H 1.08991 * 109.47098 * 299.99924 * 7 5 4 38 38 H 1.08999 * 109.47082 * 270.00033 * 9 8 7 39 39 H 1.09003 * 109.47210 * 30.00112 * 9 8 7 40 40 H 1.09004 * 109.47392 * 150.00165 * 9 8 7 41 41 H 1.08998 * 109.46621 * 60.00483 * 12 10 8 42 42 H 1.08996 * 109.47266 * 300.00146 * 12 10 8 43 43 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 44 44 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 47 47 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2403 -1.2594 1.1943 6 8 3.9354 -1.1996 0.2022 7 6 3.7428 -1.9694 2.4249 8 7 5.0855 -2.4971 2.1701 9 6 5.2506 -3.8462 1.6233 10 6 6.1687 -1.7416 2.4387 11 8 6.0320 -0.6249 2.8918 12 6 7.5500 -2.2847 2.1771 13 6 8.5771 -1.2506 2.5598 14 6 9.0826 -1.2235 3.8469 15 6 10.0244 -0.2774 4.2006 16 6 10.4635 0.6477 3.2624 17 8 11.3895 1.5786 3.6070 18 6 11.9272 1.4802 4.8395 19 1 11.5589 0.7375 5.5317 20 6 12.9531 2.3326 5.2185 21 7 13.4021 3.2371 4.3753 22 14 13.6984 2.1958 6.9258 23 1 13.0220 1.1069 7.6754 24 1 15.1474 1.8920 6.8105 25 1 13.5181 3.4802 7.6491 26 6 9.9494 0.6219 1.9726 27 6 9.0120 -0.3303 1.6235 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.4623 -0.7388 1.9895 36 1 3.0703 -2.7913 2.6703 37 1 3.7797 -1.2687 3.2590 38 1 5.3221 -4.5634 2.4409 39 1 4.3924 -4.0924 0.9980 40 1 6.1603 -3.8865 1.0240 41 1 7.6517 -2.5240 1.1186 42 1 7.7042 -3.1863 2.7699 43 1 8.7410 -1.9434 4.5758 44 1 10.4190 -0.2570 5.2057 45 1 14.1195 3.8336 4.6405 46 1 10.2856 1.3428 1.2421 47 1 8.6151 -0.3538 0.6194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171828394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:45 Heat of formation + Delta-G solvation = -100.306383 kcal Electronic energy + Delta-G solvation = -28103.681800 eV Core-core repulsion = 24058.304366 eV Total energy + Delta-G solvation = -4045.377434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47343 -40.79589 -40.11535 -38.25186 -37.08665 -36.24031 -34.40695 -33.16616 -32.58265 -31.79484 -29.75591 -28.16381 -28.13428 -27.31784 -26.41561 -23.65061 -23.09185 -22.18619 -21.55494 -20.18349 -19.83499 -18.83741 -18.39668 -18.09915 -17.55815 -16.82508 -16.58638 -16.28792 -16.08004 -15.99100 -15.73386 -15.51164 -15.15697 -15.06237 -14.80296 -14.41677 -14.35982 -14.11355 -13.96288 -13.78833 -13.58735 -13.31093 -13.18291 -13.11369 -12.97699 -12.86585 -12.80363 -12.47891 -12.32596 -12.28130 -12.22086 -12.08294 -11.96304 -11.18583 -11.15882 -10.93334 -10.74746 -10.13861 -9.78265 -9.65437 -8.91344 -8.47361 -6.15744 0.59545 0.65432 1.34110 1.42950 1.53479 1.55285 1.64593 1.96532 2.17750 2.41331 2.82738 3.15591 3.49913 3.76345 3.78406 3.93510 3.98381 4.03295 4.10936 4.17627 4.28038 4.30035 4.32384 4.43852 4.46142 4.58057 4.65679 4.67782 4.70828 4.76932 4.83413 4.90798 4.98448 5.00347 5.08079 5.14346 5.22617 5.28154 5.29000 5.44531 5.54630 5.55889 5.69956 5.76844 6.02559 6.19120 6.36735 6.55227 6.96843 7.21234 7.28658 7.78337 8.76482 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.002177 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.522963 B =12861.150023 C =13566.031402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 C -0.163 4.163 4 N -0.716 5.716 5 C 0.491 3.509 6 O -0.578 6.578 7 C 0.095 3.905 8 N -0.604 5.604 9 C 0.074 3.926 10 C 0.513 3.487 11 O -0.578 6.578 12 C -0.075 4.075 13 C -0.145 4.145 14 C -0.056 4.056 15 C -0.241 4.241 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.102 0.898 20 C -0.027 4.027 21 N -0.923 5.923 22 Si 1.023 2.977 23 H -0.250 1.250 24 H -0.266 1.266 25 H -0.269 1.269 26 C -0.207 4.207 27 C -0.061 4.061 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.078 0.922 35 H 0.416 0.584 36 H 0.155 0.845 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.134 0.866 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.273 0.727 46 H 0.109 0.891 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.304 -18.144 -4.443 33.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 C -0.221 4.221 4 N -0.370 5.370 5 C 0.277 3.723 6 O -0.457 6.457 7 C -0.032 4.032 8 N -0.337 5.337 9 C -0.067 4.067 10 C 0.302 3.698 11 O -0.457 6.457 12 C -0.114 4.114 13 C -0.146 4.146 14 C -0.074 4.074 15 C -0.260 4.260 16 C 0.063 3.937 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.224 4.224 21 N -0.561 5.561 22 Si 0.842 3.158 23 H -0.173 1.173 24 H -0.191 1.191 25 H -0.194 1.194 26 C -0.227 4.227 27 C -0.079 4.079 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.253 0.747 36 H 0.172 0.828 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.139 0.861 45 H 0.082 0.918 46 H 0.127 0.873 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.658 -17.198 -5.059 32.960 hybrid contribution 0.543 0.866 0.671 1.222 sum -27.115 -16.333 -4.388 31.957 Atomic orbital electron populations 1.22000 0.91098 1.03495 1.04048 1.20960 0.96021 0.91941 0.88078 1.22178 0.99780 0.97004 1.03179 1.46050 1.17368 1.55965 1.17572 1.21795 0.81476 0.78664 0.90410 1.90689 1.57045 1.61137 1.36853 1.21477 0.85321 1.01537 0.94825 1.47582 1.04327 1.17339 1.64409 1.22108 1.04211 0.80485 0.99908 1.21206 0.87621 0.84637 0.76300 1.90722 1.87273 1.21474 1.46227 1.20538 0.87455 0.98106 1.05314 1.19251 1.01142 1.00204 0.94010 1.20932 0.93880 0.96694 0.95910 1.21240 1.04524 1.00206 1.00047 1.19895 0.90081 0.89244 0.94449 1.83942 1.49579 1.45806 1.34759 1.21894 1.17791 1.20647 0.88619 0.88054 1.26674 0.96134 0.94711 1.04845 1.70204 1.27768 1.20210 1.37919 0.84480 0.78080 0.79158 0.74128 1.17339 1.19111 1.19387 1.20386 1.04193 1.03930 0.94147 1.20807 0.94381 0.93034 0.99712 0.90753 0.90147 0.91017 0.91655 0.91579 0.95970 0.90308 0.74662 0.82784 0.87688 0.89372 0.90273 0.90071 0.86318 0.84816 0.83858 0.86096 0.91842 0.87275 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.38 71.98 0.68 -0.34 16 2 C 0.13 1.97 3.18 44.99 0.14 2.11 16 3 C -0.16 -2.92 9.48 71.98 0.68 -2.23 16 4 N -0.72 -9.99 5.08 -442.52 -2.25 -12.24 16 5 C 0.49 10.22 7.86 87.66 0.69 10.91 16 6 O -0.58 -17.80 16.09 -3.03 -0.05 -17.85 16 7 C 0.09 1.47 5.89 85.64 0.50 1.97 16 8 N -0.60 -11.49 2.36 -851.13 -2.01 -13.50 16 9 C 0.07 0.74 10.24 127.77 1.31 2.05 16 10 C 0.51 14.28 7.67 87.66 0.67 14.95 16 11 O -0.58 -22.45 15.61 -3.05 -0.05 -22.50 16 12 C -0.08 -1.78 4.38 29.10 0.13 -1.65 16 13 C -0.14 -5.08 4.38 -19.84 -0.09 -5.17 16 14 C -0.06 -2.12 9.69 22.25 0.22 -1.91 16 15 C -0.24 -11.40 9.17 22.39 0.21 -11.20 16 16 C 0.11 6.18 6.65 22.58 0.15 6.33 16 17 O -0.23 -15.03 9.76 -22.72 -0.22 -15.25 16 18 C -0.41 -25.30 9.49 67.92 0.64 -24.65 16 19 H 0.10 5.70 5.20 -2.91 -0.02 5.68 16 20 C -0.03 -1.58 5.49 84.84 0.47 -1.11 16 21 N -0.92 -58.87 13.67 21.62 0.30 -58.57 16 22 Si 1.02 44.47 29.55 68.60 2.03 46.50 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 C -0.21 -10.03 9.99 22.39 0.22 -9.80 16 27 C -0.06 -2.43 9.69 22.25 0.22 -2.21 16 28 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 1.25 7.58 -2.38 -0.02 1.23 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 35 H 0.42 2.79 8.60 -92.70 -0.80 1.99 16 36 H 0.15 0.78 8.07 -2.39 -0.02 0.76 16 37 H 0.11 1.87 7.42 -2.39 -0.02 1.85 16 38 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.08 0.66 8.07 -2.39 -0.02 0.64 16 40 H 0.08 0.78 6.44 -2.38 -0.02 0.76 16 41 H 0.12 2.31 7.34 -2.39 -0.02 2.30 16 42 H 0.13 2.13 8.05 -2.39 -0.02 2.11 16 43 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 44 H 0.12 5.72 5.64 -2.91 -0.02 5.70 16 45 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.11 5.25 8.06 -2.91 -0.02 5.22 16 47 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -93.96 397.98 4.77 -89.19 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.19 Total: 26.18 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 6.84 Total: -21.96 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.96 Total: -84.31 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -0.32 Total: -55.61 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -93.96 4.77 -89.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171828394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.114 kcal (2) G-P(sol) polarization free energy of solvation -93.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds