Wall clock time and date at job start Tue Mar 31 2020 17:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47459 * 2 1 4 4 H 1.08998 * 109.67742 * 61.86489 * 3 2 1 5 5 C 1.53290 * 109.68543 * 301.30928 * 3 2 1 6 6 O 1.42960 * 109.22715 * 187.97333 * 5 3 2 7 7 C 1.42966 * 114.16706 * 62.57952 * 6 5 3 8 8 C 1.53709 * 109.14644 * 297.29256 * 7 6 5 9 9 N 1.47151 * 108.16331 * 52.53454 * 8 7 6 10 10 C 1.34779 * 120.98423 * 129.43610 * 9 8 7 11 11 O 1.21586 * 120.00563 * 174.37442 * 10 9 8 12 12 N 1.34778 * 119.99668 * 354.36636 * 10 9 8 13 13 C 1.46503 * 119.99976 * 185.07458 * 12 10 9 14 14 C 1.50701 * 109.47052 * 180.02562 * 13 12 10 15 15 C 1.38296 * 119.93168 * 89.99799 * 14 13 12 16 16 C 1.38105 * 120.06714 * 180.02562 * 15 14 13 17 17 C 1.38879 * 119.93128 * 359.97438 * 16 15 14 18 18 O 1.35745 * 120.07300 * 180.02562 * 17 16 15 19 19 C 1.34832 * 116.99532 * 354.48624 * 18 17 16 20 20 H 1.07990 * 120.00260 * 5.05301 * 19 18 17 21 21 C 1.38659 * 119.99903 * 185.05191 * 19 18 17 22 22 N 1.31557 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47491 * 59.99717 * 23 21 19 25 25 H 1.48498 * 109.47484 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47173 * 300.00101 * 23 21 19 27 27 C 1.38883 * 119.85980 * 0.27750 * 17 16 15 28 28 C 1.38100 * 119.93046 * 359.42408 * 27 17 16 29 29 H 1.09001 * 109.47212 * 305.12332 * 1 2 3 30 30 H 1.09005 * 109.46871 * 65.11551 * 1 2 3 31 31 H 1.08994 * 109.47651 * 185.11527 * 1 2 3 32 32 H 1.09002 * 109.46791 * 239.99582 * 2 1 3 33 33 H 1.08999 * 109.46763 * 120.00907 * 2 1 3 34 34 H 1.08997 * 109.51358 * 307.89986 * 5 3 2 35 35 H 1.09002 * 109.51116 * 67.99749 * 5 3 2 36 36 H 1.09001 * 109.51260 * 57.34328 * 7 6 5 37 37 H 1.09000 * 109.51451 * 177.44580 * 7 6 5 38 38 H 1.09005 * 109.84155 * 292.85329 * 8 7 6 39 39 H 1.09000 * 109.75126 * 172.16412 * 8 7 6 40 40 H 0.96996 * 120.00033 * 5.06554 * 12 10 9 41 41 H 1.08996 * 109.47237 * 59.99746 * 13 12 10 42 42 H 1.09006 * 109.46443 * 299.99627 * 13 12 10 43 43 H 1.07999 * 119.96797 * 0.02562 * 15 14 13 44 44 H 1.08000 * 120.03592 * 180.02562 * 16 15 14 45 45 H 0.97003 * 119.99962 * 180.02562 * 22 21 19 46 46 H 1.08003 * 120.03483 * 179.72137 * 27 17 16 47 47 H 1.08001 * 119.96840 * 180.31937 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7062 1.9497 0.9051 5 6 1.5051 2.1792 -1.2331 6 8 2.1319 3.4609 -1.3244 7 6 3.5490 3.4078 -1.5055 8 6 4.1889 2.7347 -0.2807 9 7 3.5105 1.4482 -0.0576 10 6 4.2152 0.3095 0.0952 11 8 3.6441 -0.7254 0.3800 12 7 5.5530 0.3180 -0.0680 13 6 6.3058 -0.9376 -0.0120 14 6 7.7710 -0.6547 -0.2221 15 6 8.5847 -0.3868 0.8636 16 6 9.9277 -0.1266 0.6742 17 6 10.4610 -0.1347 -0.6081 18 8 11.7808 0.1202 -0.7975 19 6 12.4952 0.4857 0.2860 20 1 12.0338 0.4854 1.2623 21 6 13.8225 0.8620 0.1466 22 7 14.3845 0.8628 -1.0428 23 14 14.8125 1.3677 1.6477 24 1 14.8587 0.2403 2.6131 25 1 16.1937 1.7222 1.2334 26 1 14.1719 2.5434 2.2902 27 6 9.6401 -0.3989 -1.6968 28 6 8.2992 -0.6644 -1.5003 29 1 -0.3634 0.5913 0.8405 30 1 -0.3633 0.4325 -0.9323 31 1 -0.3634 -1.0235 0.0916 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.7288 1.6000 -2.1289 35 1 0.4264 2.3064 -1.1417 36 1 3.7802 2.8329 -2.4023 37 1 3.9408 4.4195 -1.6105 38 1 4.0677 3.3706 0.5964 39 1 5.2492 2.5633 -0.4665 40 1 6.0174 1.1554 -0.2225 41 1 5.9496 -1.6099 -0.7925 42 1 6.1623 -1.4040 0.9627 43 1 8.1695 -0.3811 1.8605 44 1 10.5628 0.0821 1.5224 45 1 15.3132 1.1257 -1.1403 46 1 10.0510 -0.4014 -2.6956 47 1 7.6614 -0.8750 -2.3460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172148774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:44 Heat of formation + Delta-G solvation = -56.404993 kcal Electronic energy + Delta-G solvation = -28522.296844 eV Core-core repulsion = 24478.823117 eV Total energy + Delta-G solvation = -4043.473727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94305 -39.25366 -38.61663 -36.96904 -35.50299 -34.87526 -33.67771 -32.36963 -30.32275 -30.14822 -29.85862 -27.52517 -25.91886 -25.21045 -24.47147 -22.70918 -22.08880 -21.68003 -20.60706 -19.94439 -18.21045 -18.06831 -17.09005 -16.83307 -16.51840 -16.03403 -15.56563 -15.21815 -14.89277 -14.85059 -14.68804 -14.50902 -14.15196 -13.86474 -13.73064 -13.51093 -13.41675 -13.16346 -12.82607 -12.81956 -12.75893 -12.17530 -12.06918 -11.71622 -11.68798 -11.58394 -11.40235 -11.02524 -10.98525 -10.92403 -10.82359 -10.72108 -10.52872 -10.50013 -9.46337 -9.34355 -9.04097 -8.93202 -8.58793 -8.32100 -7.36523 -6.55725 -4.14774 1.96592 2.09505 2.55690 3.07140 3.07627 3.10915 3.13360 3.44528 3.81582 3.88149 4.35049 4.47425 4.61291 4.65532 4.68857 4.82947 4.90717 4.98969 5.07596 5.13086 5.19522 5.21184 5.27139 5.36770 5.37744 5.41343 5.51522 5.54137 5.63776 5.78524 5.85063 5.89716 6.07670 6.09323 6.12381 6.31960 6.45115 6.56127 6.62796 6.74068 6.75813 6.78358 6.93894 7.11697 7.24398 7.31936 7.67871 7.88681 7.89753 8.55835 8.89407 9.57216 10.61586 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.002158 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.531662 B =12971.313274 C =13421.689871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C 0.133 3.867 4 H 0.076 0.924 5 C 0.049 3.951 6 O -0.380 6.380 7 C 0.047 3.953 8 C 0.076 3.924 9 N -0.635 5.635 10 C 0.707 3.293 11 O -0.585 6.585 12 N -0.739 5.739 13 C 0.197 3.803 14 C -0.215 4.215 15 C -0.050 4.050 16 C -0.237 4.237 17 C 0.160 3.840 18 O -0.172 6.172 19 C -0.394 4.394 20 H 0.093 0.907 21 C 0.041 3.959 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.196 4.196 28 C -0.054 4.054 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.395 0.605 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.128 0.872 45 H 0.272 0.728 46 H 0.118 0.882 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.343 3.619 0.879 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.154 4.154 3 C 0.029 3.971 4 H 0.094 0.906 5 C -0.028 4.028 6 O -0.298 6.298 7 C -0.030 4.030 8 C -0.048 4.048 9 N -0.374 5.374 10 C 0.409 3.591 11 O -0.464 6.464 12 N -0.396 5.396 13 C 0.075 3.925 14 C -0.217 4.217 15 C -0.068 4.068 16 C -0.256 4.256 17 C 0.106 3.894 18 O -0.075 6.075 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.493 5.493 23 Si 0.767 3.233 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.215 4.215 28 C -0.073 4.073 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.231 0.769 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.082 0.918 46 H 0.136 0.864 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.430 3.046 0.775 22.649 hybrid contribution 1.062 0.527 0.686 1.370 sum -21.368 3.573 1.461 21.714 Atomic orbital electron populations 1.21973 0.96641 1.01968 1.01202 1.22044 0.93716 0.93623 1.06040 1.21834 0.78258 0.98532 0.98490 0.90606 1.23176 0.98092 0.84529 0.97018 1.87962 1.19886 1.28283 1.93714 1.23059 0.81507 1.02086 0.96381 1.22432 0.97524 0.85434 0.99406 1.47380 1.06270 1.06321 1.77428 1.15957 0.81789 0.83271 0.78086 1.90895 1.68459 1.31488 1.55540 1.45802 1.05184 1.11429 1.77171 1.19833 0.87054 0.84126 1.01508 1.19221 0.94013 1.14593 0.93868 1.20648 0.93018 0.95917 0.97265 1.21161 0.95809 1.11233 0.97445 1.19440 0.85176 0.91865 0.92955 1.83978 1.14256 1.73056 1.36205 1.21307 0.93305 1.46056 0.86351 0.88966 1.25322 0.96160 0.96446 0.98524 1.70026 1.13525 1.43559 1.22190 0.85761 0.78589 0.79307 0.79690 1.19407 1.20194 1.19431 1.20217 0.92982 1.10734 0.97567 1.20528 0.93995 0.97102 0.95646 0.92845 0.93161 0.92339 0.91355 0.87845 0.92599 0.87617 0.92397 0.87497 0.90373 0.89143 0.76890 0.91816 0.91676 0.87402 0.85423 0.91799 0.86387 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.39 37.16 0.35 -0.87 16 2 C -0.12 -1.21 3.93 -26.73 -0.11 -1.32 16 3 C 0.13 1.29 3.22 -67.43 -0.22 1.07 16 4 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 5 C 0.05 0.42 5.65 37.31 0.21 0.63 16 6 O -0.38 -3.63 10.74 -35.23 -0.38 -4.01 16 7 C 0.05 0.37 7.00 37.53 0.26 0.63 16 8 C 0.08 0.64 6.66 -3.32 -0.02 0.61 16 9 N -0.63 -6.84 3.01 -170.18 -0.51 -7.35 16 10 C 0.71 9.41 8.13 -86.91 -0.71 8.71 16 11 O -0.58 -9.29 12.10 5.29 0.06 -9.22 16 12 N -0.74 -9.27 5.47 -66.41 -0.36 -9.63 16 13 C 0.20 2.72 5.80 -5.19 -0.03 2.69 16 14 C -0.22 -3.37 5.25 -104.58 -0.55 -3.92 16 15 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 16 C -0.24 -4.82 9.17 -39.39 -0.36 -5.18 16 17 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 18 O -0.17 -4.72 9.76 0.06 0.00 -4.72 16 19 C -0.39 -10.59 9.49 30.89 0.29 -10.29 16 20 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -24.41 13.67 55.48 0.76 -23.65 16 23 Si 0.94 19.81 29.55 -169.99 -5.02 14.78 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 C -0.20 -3.86 9.99 -39.39 -0.39 -4.25 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.32 6.90 -51.93 -0.36 -0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.83 7.43 -51.93 -0.39 0.44 16 33 H 0.10 1.34 6.12 -51.93 -0.32 1.03 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.71 7.02 -51.93 -0.36 0.35 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.69 5.66 -51.93 -0.29 0.40 16 40 H 0.39 4.46 5.97 -40.82 -0.24 4.21 16 41 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 47 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -30.93 376.41 -8.91 -39.84 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.74 Total: 7.89 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.39 Total: -9.60 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -0.12 Total: -40.64 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.31 Total: -17.95 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.93 -8.91 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172148774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.564 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds