Wall clock time and date at job start Tue Mar 31 2020 17:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47459 * 2 1 4 4 H 1.08998 * 109.67742 * 61.86489 * 3 2 1 5 5 C 1.53290 * 109.68543 * 301.30928 * 3 2 1 6 6 O 1.42960 * 109.22715 * 187.97333 * 5 3 2 7 7 C 1.42966 * 114.16706 * 62.57952 * 6 5 3 8 8 C 1.53709 * 109.14644 * 297.29256 * 7 6 5 9 9 N 1.47151 * 108.16331 * 52.53454 * 8 7 6 10 10 C 1.34779 * 120.98423 * 129.43610 * 9 8 7 11 11 O 1.21586 * 120.00563 * 174.37442 * 10 9 8 12 12 N 1.34778 * 119.99668 * 354.36636 * 10 9 8 13 13 C 1.46503 * 119.99976 * 185.07458 * 12 10 9 14 14 C 1.50701 * 109.47052 * 180.02562 * 13 12 10 15 15 C 1.38296 * 119.93168 * 89.99799 * 14 13 12 16 16 C 1.38105 * 120.06714 * 180.02562 * 15 14 13 17 17 C 1.38879 * 119.93128 * 359.97438 * 16 15 14 18 18 O 1.35745 * 120.07300 * 180.02562 * 17 16 15 19 19 C 1.34832 * 116.99532 * 354.48624 * 18 17 16 20 20 H 1.07990 * 120.00260 * 5.05301 * 19 18 17 21 21 C 1.38659 * 119.99903 * 185.05191 * 19 18 17 22 22 N 1.31557 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47491 * 59.99717 * 23 21 19 25 25 H 1.48498 * 109.47484 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47173 * 300.00101 * 23 21 19 27 27 C 1.38883 * 119.85980 * 0.27750 * 17 16 15 28 28 C 1.38100 * 119.93046 * 359.42408 * 27 17 16 29 29 H 1.09001 * 109.47212 * 305.12332 * 1 2 3 30 30 H 1.09005 * 109.46871 * 65.11551 * 1 2 3 31 31 H 1.08994 * 109.47651 * 185.11527 * 1 2 3 32 32 H 1.09002 * 109.46791 * 239.99582 * 2 1 3 33 33 H 1.08999 * 109.46763 * 120.00907 * 2 1 3 34 34 H 1.08997 * 109.51358 * 307.89986 * 5 3 2 35 35 H 1.09002 * 109.51116 * 67.99749 * 5 3 2 36 36 H 1.09001 * 109.51260 * 57.34328 * 7 6 5 37 37 H 1.09000 * 109.51451 * 177.44580 * 7 6 5 38 38 H 1.09005 * 109.84155 * 292.85329 * 8 7 6 39 39 H 1.09000 * 109.75126 * 172.16412 * 8 7 6 40 40 H 0.96996 * 120.00033 * 5.06554 * 12 10 9 41 41 H 1.08996 * 109.47237 * 59.99746 * 13 12 10 42 42 H 1.09006 * 109.46443 * 299.99627 * 13 12 10 43 43 H 1.07999 * 119.96797 * 0.02562 * 15 14 13 44 44 H 1.08000 * 120.03592 * 180.02562 * 16 15 14 45 45 H 0.97003 * 119.99962 * 180.02562 * 22 21 19 46 46 H 1.08003 * 120.03483 * 179.72137 * 27 17 16 47 47 H 1.08001 * 119.96840 * 180.31937 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7062 1.9497 0.9051 5 6 1.5051 2.1792 -1.2331 6 8 2.1319 3.4609 -1.3244 7 6 3.5490 3.4078 -1.5055 8 6 4.1889 2.7347 -0.2807 9 7 3.5105 1.4482 -0.0576 10 6 4.2152 0.3095 0.0952 11 8 3.6441 -0.7254 0.3800 12 7 5.5530 0.3180 -0.0680 13 6 6.3058 -0.9376 -0.0120 14 6 7.7710 -0.6547 -0.2221 15 6 8.5847 -0.3868 0.8636 16 6 9.9277 -0.1266 0.6742 17 6 10.4610 -0.1347 -0.6081 18 8 11.7808 0.1202 -0.7975 19 6 12.4952 0.4857 0.2860 20 1 12.0338 0.4854 1.2623 21 6 13.8225 0.8620 0.1466 22 7 14.3845 0.8628 -1.0428 23 14 14.8125 1.3677 1.6477 24 1 14.8587 0.2403 2.6131 25 1 16.1937 1.7222 1.2334 26 1 14.1719 2.5434 2.2902 27 6 9.6401 -0.3989 -1.6968 28 6 8.2992 -0.6644 -1.5003 29 1 -0.3634 0.5913 0.8405 30 1 -0.3633 0.4325 -0.9323 31 1 -0.3634 -1.0235 0.0916 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.7288 1.6000 -2.1289 35 1 0.4264 2.3064 -1.1417 36 1 3.7802 2.8329 -2.4023 37 1 3.9408 4.4195 -1.6105 38 1 4.0677 3.3706 0.5964 39 1 5.2492 2.5633 -0.4665 40 1 6.0174 1.1554 -0.2225 41 1 5.9496 -1.6099 -0.7925 42 1 6.1623 -1.4040 0.9627 43 1 8.1695 -0.3811 1.8605 44 1 10.5628 0.0821 1.5224 45 1 15.3132 1.1257 -1.1403 46 1 10.0510 -0.4014 -2.6956 47 1 7.6614 -0.8750 -2.3460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172148774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:43 Heat of formation + Delta-G solvation = -76.278656 kcal Electronic energy + Delta-G solvation = -28523.158631 eV Core-core repulsion = 24478.823117 eV Total energy + Delta-G solvation = -4044.335514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84674 -40.83075 -39.55474 -38.50752 -36.44562 -35.82681 -34.72662 -34.17935 -31.84718 -31.28419 -30.78571 -28.40914 -27.56559 -26.31976 -25.52966 -23.65258 -23.47624 -22.62751 -21.97052 -20.90483 -19.87916 -19.13227 -18.74638 -17.70422 -17.32552 -16.96361 -16.56845 -16.33529 -16.27627 -15.92455 -15.77896 -15.76636 -15.50647 -15.28415 -15.17559 -14.55555 -14.40909 -14.30341 -14.15038 -13.93298 -13.65034 -13.49349 -13.26550 -13.01794 -12.84931 -12.51535 -12.42047 -12.37492 -12.25440 -12.17227 -12.12706 -11.77304 -11.71513 -11.23646 -11.20859 -10.81399 -10.31629 -10.09940 -9.81996 -9.43132 -9.02252 -8.48430 -6.16698 0.51433 0.56979 1.35848 1.44570 1.51491 1.60761 2.11308 2.17028 2.71135 2.82329 2.96710 3.20385 3.47977 3.66811 3.83216 3.89320 3.97845 4.02446 4.03441 4.16124 4.16649 4.23544 4.41531 4.46365 4.53750 4.56425 4.60883 4.70770 4.72091 4.79827 4.81201 4.85818 4.89605 5.03517 5.13871 5.25315 5.25782 5.29542 5.31799 5.51219 5.51416 5.68178 5.70233 5.74918 5.87072 6.00945 6.08878 6.15201 6.92121 6.96271 7.54808 7.75236 8.73970 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.002158 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.531662 B =12971.313274 C =13421.689871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C 0.130 3.870 4 H 0.081 0.919 5 C 0.054 3.946 6 O -0.392 6.392 7 C 0.047 3.953 8 C 0.073 3.927 9 N -0.634 5.634 10 C 0.703 3.297 11 O -0.614 6.614 12 N -0.734 5.734 13 C 0.205 3.795 14 C -0.182 4.182 15 C -0.045 4.045 16 C -0.243 4.243 17 C 0.123 3.877 18 O -0.228 6.228 19 C -0.414 4.414 20 H 0.103 0.897 21 C -0.021 4.021 22 N -0.918 5.918 23 Si 1.017 2.983 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.256 1.256 27 C -0.204 4.204 28 C -0.042 4.042 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.126 0.874 36 H 0.056 0.944 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.402 0.598 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.137 0.863 44 H 0.120 0.880 45 H 0.273 0.727 46 H 0.116 0.884 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.218 4.388 1.901 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C 0.026 3.974 4 H 0.099 0.901 5 C -0.023 4.023 6 O -0.310 6.310 7 C -0.031 4.031 8 C -0.050 4.050 9 N -0.372 5.372 10 C 0.405 3.595 11 O -0.495 6.495 12 N -0.392 5.392 13 C 0.082 3.918 14 C -0.184 4.184 15 C -0.063 4.063 16 C -0.263 4.263 17 C 0.072 3.928 18 O -0.134 6.134 19 C -0.490 4.490 20 H 0.121 0.879 21 C -0.219 4.219 22 N -0.556 5.556 23 Si 0.836 3.164 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.223 4.223 28 C -0.061 4.061 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.146 0.854 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.240 0.760 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.155 0.845 44 H 0.138 0.862 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.377 3.833 1.800 25.728 hybrid contribution 1.533 0.204 0.333 1.582 sum -23.844 4.037 2.132 24.277 Atomic orbital electron populations 1.21921 0.94448 1.02326 1.02513 1.21821 0.95561 0.93573 1.03532 1.21954 0.77699 0.98219 0.99498 0.90099 1.23197 0.99101 0.84026 0.95985 1.87954 1.20727 1.28689 1.93666 1.23180 0.80813 1.03236 0.95836 1.22615 0.97830 0.84372 1.00174 1.47463 1.06797 1.06439 1.76501 1.16067 0.81811 0.83592 0.78018 1.90905 1.68990 1.32818 1.56751 1.45563 1.05092 1.11243 1.77291 1.19704 0.85369 0.84811 1.01962 1.19490 0.95005 1.10706 0.93154 1.20925 0.91569 0.94663 0.99179 1.21239 0.97238 1.11486 0.96288 1.19992 0.84532 0.93309 0.94960 1.83949 1.16386 1.76154 1.36911 1.21782 0.93979 1.46283 0.86953 0.87929 1.26574 0.97122 0.96332 1.01905 1.70171 1.14001 1.46542 1.24853 0.84666 0.76726 0.79403 0.75581 1.18259 1.19766 1.18070 1.20447 0.94154 1.10786 0.96915 1.20862 0.92735 0.95244 0.97217 0.91767 0.91585 0.92504 0.93446 0.90684 0.92985 0.85645 0.92591 0.85429 0.89488 0.88365 0.75997 0.91158 0.91502 0.84516 0.86185 0.91793 0.86638 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.39 71.98 0.68 -1.37 16 2 C -0.11 -2.10 3.93 30.59 0.12 -1.98 16 3 C 0.13 2.26 3.22 44.96 0.14 2.40 16 4 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 5 C 0.05 0.78 5.65 72.08 0.41 1.19 16 6 O -0.39 -6.41 10.74 -148.98 -1.60 -8.01 16 7 C 0.05 0.60 7.00 72.22 0.51 1.11 16 8 C 0.07 1.02 6.66 86.49 0.58 1.60 16 9 N -0.63 -12.29 3.01 -810.60 -2.44 -14.73 16 10 C 0.70 17.28 8.13 179.05 1.46 18.73 16 11 O -0.61 -18.71 12.10 -3.99 -0.05 -18.76 16 12 N -0.73 -16.26 5.47 -482.28 -2.64 -18.90 16 13 C 0.20 4.97 5.80 85.63 0.50 5.46 16 14 C -0.18 -5.15 5.25 -19.83 -0.10 -5.25 16 15 C -0.04 -1.41 9.69 22.25 0.22 -1.20 16 16 C -0.24 -9.86 9.17 22.39 0.21 -9.65 16 17 C 0.12 5.77 6.65 22.58 0.15 5.92 16 18 O -0.23 -13.18 9.76 -22.71 -0.22 -13.41 16 19 C -0.41 -23.25 9.49 67.92 0.64 -22.60 16 20 H 0.10 5.25 5.20 -2.92 -0.02 5.23 16 21 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 22 N -0.92 -54.97 13.67 21.61 0.30 -54.67 16 23 Si 1.02 41.53 29.55 68.60 2.03 43.56 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 27 C -0.20 -8.01 9.99 22.39 0.22 -7.79 16 28 C -0.04 -1.27 9.69 22.25 0.22 -1.06 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.68 6.90 -2.38 -0.02 0.66 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 1.11 7.43 -2.39 -0.02 1.10 16 33 H 0.07 1.92 6.12 -2.39 -0.01 1.91 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.13 1.29 7.02 -2.39 -0.02 1.27 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.10 1.20 5.66 -2.39 -0.01 1.19 16 40 H 0.40 7.77 5.97 -92.71 -0.55 7.21 16 41 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 42 H 0.07 1.68 8.08 -2.38 -0.02 1.66 16 43 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 44 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 45 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 47 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -71.61 376.41 2.21 -69.39 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.44 Total: 30.73 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 6.40 Total: -15.20 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -4.78 Total: -88.30 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.87 Total: -40.18 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -71.61 2.21 -69.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172148774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.887 kcal (2) G-P(sol) polarization free energy of solvation -71.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds