Wall clock time and date at job start Tue Mar 31 2020 17:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 H 1.08999 * 109.70934 * 300.62323 * 3 2 1 5 5 C 1.53716 * 109.74750 * 61.38905 * 3 2 1 6 6 O 1.42962 * 109.14640 * 172.16730 * 5 3 2 7 7 C 1.42961 * 114.16607 * 297.28292 * 6 5 3 8 8 C 1.53299 * 109.21938 * 62.58477 * 7 6 5 9 9 N 1.47148 * 108.38428 * 307.69827 * 8 7 6 10 10 C 1.34780 * 120.97739 * 230.51251 * 9 8 7 11 11 O 1.21583 * 119.99882 * 174.64651 * 10 9 8 12 12 N 1.34775 * 120.00214 * 354.64030 * 10 9 8 13 13 C 1.46496 * 120.00276 * 184.98117 * 12 10 9 14 14 C 1.50698 * 109.47677 * 180.02562 * 13 12 10 15 15 C 1.38303 * 119.93056 * 89.99497 * 14 13 12 16 16 C 1.38098 * 120.06477 * 180.02562 * 15 14 13 17 17 C 1.38874 * 119.93385 * 0.02562 * 16 15 14 18 18 O 1.35755 * 120.06858 * 180.02562 * 17 16 15 19 19 C 1.34826 * 117.00046 * 5.57868 * 18 17 16 20 20 H 1.08003 * 120.00025 * 354.63742 * 19 18 17 21 21 C 1.38659 * 119.99796 * 174.91293 * 19 18 17 22 22 N 1.31557 * 119.99903 * 179.72140 * 21 19 18 23 23 Si 1.86794 * 120.00222 * 359.72795 * 21 19 18 24 24 H 1.48495 * 109.47444 * 89.99820 * 23 21 19 25 25 H 1.48501 * 109.47151 * 210.00093 * 23 21 19 26 26 H 1.48507 * 109.46910 * 329.99716 * 23 21 19 27 27 C 1.38877 * 119.86371 * 0.27382 * 17 16 15 28 28 C 1.38101 * 119.92795 * 359.47461 * 27 17 16 29 29 H 1.08999 * 109.47446 * 64.79268 * 1 2 3 30 30 H 1.09002 * 109.47517 * 184.79482 * 1 2 3 31 31 H 1.09001 * 109.47508 * 304.78916 * 1 2 3 32 32 H 1.09000 * 109.47384 * 240.00045 * 2 1 3 33 33 H 1.09003 * 109.47056 * 120.00110 * 2 1 3 34 34 H 1.09003 * 109.65883 * 52.19965 * 5 3 2 35 35 H 1.09001 * 109.48174 * 292.03080 * 5 3 2 36 36 H 1.08994 * 109.51536 * 302.66027 * 7 6 5 37 37 H 1.09001 * 109.55314 * 182.53196 * 7 6 5 38 38 H 1.08992 * 109.68157 * 187.96583 * 8 7 6 39 39 H 1.09004 * 109.67910 * 67.42203 * 8 7 6 40 40 H 0.96999 * 120.00076 * 4.97828 * 12 10 9 41 41 H 1.08999 * 109.47126 * 59.99624 * 13 12 10 42 42 H 1.09003 * 109.47047 * 300.00263 * 13 12 10 43 43 H 1.07998 * 119.96648 * 0.02775 * 15 14 13 44 44 H 1.07999 * 120.03120 * 179.97438 * 16 15 14 45 45 H 0.96994 * 120.00459 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.03548 * 179.72141 * 27 17 16 47 47 H 1.07996 * 119.96789 * 180.23185 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6697 1.9633 -0.8830 5 6 1.5599 2.1631 1.2701 6 8 2.1897 3.4441 1.3488 7 6 3.6135 3.3901 1.4663 8 6 4.1987 2.7313 0.2119 9 7 3.5114 1.4479 -0.0020 10 6 4.2092 0.3118 -0.1994 11 8 3.6276 -0.7531 -0.2771 12 7 5.5516 0.3561 -0.3108 13 6 6.3004 -0.8609 -0.6338 14 6 7.7721 -0.5430 -0.6987 15 6 8.5505 -0.6430 0.4400 16 6 9.8993 -0.3518 0.3838 17 6 10.4737 0.0422 -0.8176 18 8 11.7994 0.3286 -0.8761 19 6 12.5247 0.1001 0.2372 20 1 12.0334 -0.2109 1.1474 21 6 13.9007 0.2700 0.2152 22 7 14.6078 0.0524 1.3030 23 14 14.7503 0.8080 -1.3589 24 1 14.8160 2.2908 -1.4041 25 1 16.1261 0.2503 -1.3943 26 1 13.9842 0.3104 -2.5298 27 6 9.6880 0.1477 -1.9580 28 6 8.3409 -0.1498 -1.8965 29 1 -0.3634 0.4377 -0.9298 30 1 -0.3634 -1.0241 0.0859 31 1 -0.3634 0.5863 0.8440 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.8234 1.5733 2.1481 35 1 0.4782 2.2910 1.2286 36 1 3.8843 2.8048 2.3449 37 1 4.0099 4.4006 1.5656 38 1 5.2655 2.5577 0.3522 39 1 4.0422 3.3797 -0.6503 40 1 6.0220 1.1938 -0.1772 41 1 5.9687 -1.2465 -1.5978 42 1 6.1248 -1.6110 0.1374 43 1 8.1032 -0.9492 1.3741 44 1 10.5066 -0.4297 1.2734 45 1 15.5703 0.1708 1.2876 46 1 10.1309 0.4583 -2.8927 47 1 7.7301 -0.0716 -2.7837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172148778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:46 Heat of formation + Delta-G solvation = -72.762391 kcal Electronic energy + Delta-G solvation = -28512.311185 eV Core-core repulsion = 24468.128148 eV Total energy + Delta-G solvation = -4044.183037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85279 -40.94431 -39.57539 -38.60963 -36.45593 -35.83381 -34.73562 -34.34570 -31.89043 -31.41359 -30.81440 -28.47516 -27.59028 -26.22590 -25.48913 -23.72902 -23.46993 -22.60590 -21.92487 -20.93223 -19.85122 -19.20192 -18.89807 -17.71704 -17.36130 -17.01828 -16.65515 -16.52845 -16.03426 -15.96573 -15.84401 -15.71675 -15.60325 -15.24736 -15.06718 -14.64835 -14.42349 -14.29534 -14.22059 -14.07023 -13.93060 -13.52125 -13.36060 -13.10476 -12.89257 -12.56816 -12.49823 -12.40415 -12.27293 -12.18956 -11.93960 -11.77024 -11.68452 -11.31302 -11.23151 -10.93015 -10.36447 -10.05361 -9.84883 -9.42633 -9.11062 -8.51344 -6.24489 0.45551 0.53394 1.32378 1.35536 1.51673 1.59719 2.10850 2.26980 2.67359 2.81279 2.91274 3.05013 3.19393 3.66579 3.80753 3.88524 3.98215 4.00548 4.03356 4.12566 4.15528 4.23014 4.41082 4.43902 4.52474 4.54165 4.60936 4.69296 4.71596 4.78936 4.80896 4.87394 4.89871 4.94551 5.20902 5.25593 5.28452 5.32975 5.34521 5.50458 5.52490 5.68806 5.70011 5.77863 5.86791 5.87414 6.08209 6.18032 6.82686 6.91853 7.54278 7.55458 8.59838 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002155 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.814911 B =12990.261362 C =13523.094056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C 0.130 3.870 4 H 0.085 0.915 5 C 0.053 3.947 6 O -0.392 6.392 7 C 0.046 3.954 8 C 0.073 3.927 9 N -0.633 5.633 10 C 0.702 3.298 11 O -0.613 6.613 12 N -0.734 5.734 13 C 0.203 3.797 14 C -0.174 4.174 15 C -0.049 4.049 16 C -0.237 4.237 17 C 0.130 3.870 18 O -0.241 6.241 19 C -0.399 4.399 20 H 0.083 0.917 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.261 1.261 27 C -0.191 4.191 28 C -0.044 4.044 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.126 0.874 36 H 0.052 0.948 37 H 0.129 0.871 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.403 0.597 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.132 0.868 44 H 0.109 0.891 45 H 0.285 0.715 46 H 0.131 0.869 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.355 6.100 -3.597 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C 0.026 3.974 4 H 0.102 0.898 5 C -0.025 4.025 6 O -0.310 6.310 7 C -0.032 4.032 8 C -0.049 4.049 9 N -0.372 5.372 10 C 0.404 3.596 11 O -0.494 6.494 12 N -0.392 5.392 13 C 0.080 3.920 14 C -0.175 4.175 15 C -0.068 4.068 16 C -0.257 4.257 17 C 0.080 3.920 18 O -0.148 6.148 19 C -0.475 4.475 20 H 0.100 0.900 21 C -0.189 4.189 22 N -0.562 5.562 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.186 1.186 27 C -0.210 4.210 28 C -0.062 4.062 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.143 0.857 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.240 0.760 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.150 0.850 44 H 0.127 0.873 45 H 0.095 0.905 46 H 0.149 0.851 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -26.519 5.575 -3.748 27.356 hybrid contribution 1.507 0.053 0.233 1.525 sum -25.012 5.628 -3.515 25.877 Atomic orbital electron populations 1.21952 0.94643 1.02288 1.02506 1.21792 0.95292 0.93471 1.03446 1.22042 0.77722 0.98257 0.99336 0.89758 1.23290 0.99308 0.84138 0.95731 1.87953 1.20037 1.28711 1.94288 1.23109 0.80874 1.03315 0.95860 1.22529 0.97816 0.84553 1.00042 1.47449 1.06742 1.06765 1.76210 1.16074 0.81867 0.83833 0.77789 1.90935 1.68485 1.30009 1.59964 1.45532 1.04599 1.13293 1.75735 1.19721 0.85341 0.85778 1.01205 1.19540 0.94969 1.09154 0.93826 1.20900 0.91691 0.95647 0.98537 1.21257 0.96844 1.09712 0.97861 1.19735 0.83686 0.93521 0.95032 1.83522 1.17073 1.76217 1.38033 1.20705 0.90441 1.47773 0.88627 0.89961 1.25297 0.95719 0.96291 1.01574 1.69725 1.08221 1.48777 1.29447 0.85214 0.77564 0.79148 0.78800 1.18970 1.19483 1.18566 1.20511 0.94355 1.09710 0.96438 1.20935 0.92677 0.94649 0.97933 0.91938 0.92545 0.91467 0.91160 0.93206 0.93169 0.85655 0.92940 0.85305 0.88348 0.89232 0.75960 0.90780 0.91765 0.85034 0.87284 0.90546 0.85080 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.73 71.98 0.70 -1.36 16 2 C -0.10 -1.98 3.89 30.59 0.12 -1.86 16 3 C 0.13 2.19 3.21 45.11 0.14 2.34 16 4 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 5 C 0.05 0.76 5.75 72.22 0.42 1.17 16 6 O -0.39 -6.31 10.74 -148.98 -1.60 -7.91 16 7 C 0.05 0.58 6.99 72.08 0.50 1.08 16 8 C 0.07 0.97 6.57 86.36 0.57 1.53 16 9 N -0.63 -11.83 3.01 -810.61 -2.44 -14.27 16 10 C 0.70 16.73 8.23 179.05 1.47 18.20 16 11 O -0.61 -18.30 11.90 -3.98 -0.05 -18.35 16 12 N -0.73 -15.53 5.46 -482.31 -2.63 -18.16 16 13 C 0.20 4.71 5.80 85.63 0.50 5.21 16 14 C -0.17 -4.65 5.25 -19.83 -0.10 -4.75 16 15 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16 16 C -0.24 -9.70 9.17 22.39 0.21 -9.50 16 17 C 0.13 5.67 6.65 22.58 0.15 5.82 16 18 O -0.24 -12.51 8.59 -22.76 -0.20 -12.71 16 19 C -0.40 -22.73 9.95 67.92 0.68 -22.06 16 20 H 0.08 4.91 5.44 -2.91 -0.02 4.89 16 21 C 0.01 0.56 5.49 84.83 0.47 1.03 16 22 N -0.92 -53.89 13.96 21.61 0.30 -53.59 16 23 Si 0.97 44.11 28.62 68.60 1.96 46.07 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 27 C -0.19 -6.60 9.99 22.39 0.22 -6.38 16 28 C -0.04 -1.18 9.69 22.25 0.22 -0.96 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.67 6.43 -2.39 -0.02 0.66 16 32 H 0.07 1.75 6.26 -2.39 -0.01 1.74 16 33 H 0.05 1.19 7.28 -2.39 -0.02 1.17 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.13 1.27 6.83 -2.39 -0.02 1.25 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.11 5.78 -2.39 -0.01 1.10 16 39 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.40 7.29 6.02 -92.71 -0.56 6.73 16 41 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 42 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 43 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.11 4.99 5.64 -2.91 -0.02 4.97 16 45 H 0.28 15.30 8.31 -92.71 -0.77 14.52 16 46 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 47 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -68.47 374.96 2.25 -66.21 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.44 Total: 24.52 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 6.47 Total: -11.83 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -4.77 Total: -86.02 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.84 Total: -38.96 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.96 Total: 46.07 kcal Total: -68.47 2.25 -66.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172148778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.549 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds