Wall clock time and date at job start Tue Mar 31 2020 17:47:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52999 * 109.47296 * 2 1
4 4 H 1.08999 * 109.70934 * 300.62323 * 3 2 1
5 5 C 1.53716 * 109.74750 * 61.38905 * 3 2 1
6 6 O 1.42962 * 109.14640 * 172.16730 * 5 3 2
7 7 C 1.42961 * 114.16607 * 297.28292 * 6 5 3
8 8 C 1.53299 * 109.21938 * 62.58477 * 7 6 5
9 9 N 1.47148 * 108.38428 * 307.69827 * 8 7 6
10 10 C 1.34780 * 120.97739 * 230.51251 * 9 8 7
11 11 O 1.21583 * 119.99882 * 174.64651 * 10 9 8
12 12 N 1.34775 * 120.00214 * 354.64030 * 10 9 8
13 13 C 1.46496 * 120.00276 * 184.98117 * 12 10 9
14 14 C 1.50698 * 109.47677 * 180.02562 * 13 12 10
15 15 C 1.38303 * 119.93056 * 89.99497 * 14 13 12
16 16 C 1.38098 * 120.06477 * 180.02562 * 15 14 13
17 17 C 1.38874 * 119.93385 * 0.02562 * 16 15 14
18 18 O 1.35755 * 120.06858 * 180.02562 * 17 16 15
19 19 C 1.34826 * 117.00046 * 5.57868 * 18 17 16
20 20 H 1.08003 * 120.00025 * 354.63742 * 19 18 17
21 21 C 1.38659 * 119.99796 * 174.91293 * 19 18 17
22 22 N 1.31557 * 119.99903 * 179.72140 * 21 19 18
23 23 Si 1.86794 * 120.00222 * 359.72795 * 21 19 18
24 24 H 1.48495 * 109.47444 * 89.99820 * 23 21 19
25 25 H 1.48501 * 109.47151 * 210.00093 * 23 21 19
26 26 H 1.48507 * 109.46910 * 329.99716 * 23 21 19
27 27 C 1.38877 * 119.86371 * 0.27382 * 17 16 15
28 28 C 1.38101 * 119.92795 * 359.47461 * 27 17 16
29 29 H 1.08999 * 109.47446 * 64.79268 * 1 2 3
30 30 H 1.09002 * 109.47517 * 184.79482 * 1 2 3
31 31 H 1.09001 * 109.47508 * 304.78916 * 1 2 3
32 32 H 1.09000 * 109.47384 * 240.00045 * 2 1 3
33 33 H 1.09003 * 109.47056 * 120.00110 * 2 1 3
34 34 H 1.09003 * 109.65883 * 52.19965 * 5 3 2
35 35 H 1.09001 * 109.48174 * 292.03080 * 5 3 2
36 36 H 1.08994 * 109.51536 * 302.66027 * 7 6 5
37 37 H 1.09001 * 109.55314 * 182.53196 * 7 6 5
38 38 H 1.08992 * 109.68157 * 187.96583 * 8 7 6
39 39 H 1.09004 * 109.67910 * 67.42203 * 8 7 6
40 40 H 0.96999 * 120.00076 * 4.97828 * 12 10 9
41 41 H 1.08999 * 109.47126 * 59.99624 * 13 12 10
42 42 H 1.09003 * 109.47047 * 300.00263 * 13 12 10
43 43 H 1.07998 * 119.96648 * 0.02775 * 15 14 13
44 44 H 1.07999 * 120.03120 * 179.97438 * 16 15 14
45 45 H 0.96994 * 120.00459 * 179.97438 * 22 21 19
46 46 H 1.07997 * 120.03548 * 179.72141 * 27 17 16
47 47 H 1.07996 * 119.96789 * 180.23185 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6697 1.9633 -0.8830
5 6 1.5599 2.1631 1.2701
6 8 2.1897 3.4441 1.3488
7 6 3.6135 3.3901 1.4663
8 6 4.1987 2.7313 0.2119
9 7 3.5114 1.4479 -0.0020
10 6 4.2092 0.3118 -0.1994
11 8 3.6276 -0.7531 -0.2771
12 7 5.5516 0.3561 -0.3108
13 6 6.3004 -0.8609 -0.6338
14 6 7.7721 -0.5430 -0.6987
15 6 8.5505 -0.6430 0.4400
16 6 9.8993 -0.3518 0.3838
17 6 10.4737 0.0422 -0.8176
18 8 11.7994 0.3286 -0.8761
19 6 12.5247 0.1001 0.2372
20 1 12.0334 -0.2109 1.1474
21 6 13.9007 0.2700 0.2152
22 7 14.6078 0.0524 1.3030
23 14 14.7503 0.8080 -1.3589
24 1 14.8160 2.2908 -1.4041
25 1 16.1261 0.2503 -1.3943
26 1 13.9842 0.3104 -2.5298
27 6 9.6880 0.1477 -1.9580
28 6 8.3409 -0.1498 -1.8965
29 1 -0.3634 0.4377 -0.9298
30 1 -0.3634 -1.0241 0.0859
31 1 -0.3634 0.5863 0.8440
32 1 1.8933 -0.5138 -0.8900
33 1 1.8932 -0.5139 0.8900
34 1 1.8234 1.5733 2.1481
35 1 0.4782 2.2910 1.2286
36 1 3.8843 2.8048 2.3449
37 1 4.0099 4.4006 1.5656
38 1 5.2655 2.5577 0.3522
39 1 4.0422 3.3797 -0.6503
40 1 6.0220 1.1938 -0.1772
41 1 5.9687 -1.2465 -1.5978
42 1 6.1248 -1.6110 0.1374
43 1 8.1032 -0.9492 1.3741
44 1 10.5066 -0.4297 1.2734
45 1 15.5703 0.1708 1.2876
46 1 10.1309 0.4583 -2.8927
47 1 7.7301 -0.0716 -2.7837
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000172148778.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:47:46
Heat of formation + Delta-G solvation = -72.762391 kcal
Electronic energy + Delta-G solvation = -28512.311185 eV
Core-core repulsion = 24468.128148 eV
Total energy + Delta-G solvation = -4044.183037 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.173 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.85279 -40.94431 -39.57539 -38.60963 -36.45593 -35.83381 -34.73562 -34.34570
-31.89043 -31.41359 -30.81440 -28.47516 -27.59028 -26.22590 -25.48913 -23.72902
-23.46993 -22.60590 -21.92487 -20.93223 -19.85122 -19.20192 -18.89807 -17.71704
-17.36130 -17.01828 -16.65515 -16.52845 -16.03426 -15.96573 -15.84401 -15.71675
-15.60325 -15.24736 -15.06718 -14.64835 -14.42349 -14.29534 -14.22059 -14.07023
-13.93060 -13.52125 -13.36060 -13.10476 -12.89257 -12.56816 -12.49823 -12.40415
-12.27293 -12.18956 -11.93960 -11.77024 -11.68452 -11.31302 -11.23151 -10.93015
-10.36447 -10.05361 -9.84883 -9.42633 -9.11062 -8.51344 -6.24489 0.45551
0.53394 1.32378 1.35536 1.51673 1.59719 2.10850 2.26980 2.67359
2.81279 2.91274 3.05013 3.19393 3.66579 3.80753 3.88524 3.98215
4.00548 4.03356 4.12566 4.15528 4.23014 4.41082 4.43902 4.52474
4.54165 4.60936 4.69296 4.71596 4.78936 4.80896 4.87394 4.89871
4.94551 5.20902 5.25593 5.28452 5.32975 5.34521 5.50458 5.52490
5.68806 5.70011 5.77863 5.86791 5.87414 6.08209 6.18032 6.82686
6.91853 7.54278 7.55458 8.59838
Molecular weight = 334.17amu
Principal moments of inertia in cm(-1)
A = 0.022836 B = 0.002155 C = 0.002070
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1225.814911 B =12990.261362 C =13523.094056
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.102 4.102
3 C 0.130 3.870
4 H 0.085 0.915
5 C 0.053 3.947
6 O -0.392 6.392
7 C 0.046 3.954
8 C 0.073 3.927
9 N -0.633 5.633
10 C 0.702 3.298
11 O -0.613 6.613
12 N -0.734 5.734
13 C 0.203 3.797
14 C -0.174 4.174
15 C -0.049 4.049
16 C -0.237 4.237
17 C 0.130 3.870
18 O -0.241 6.241
19 C -0.399 4.399
20 H 0.083 0.917
21 C 0.010 3.990
22 N -0.921 5.921
23 Si 0.971 3.029
24 H -0.265 1.265
25 H -0.270 1.270
26 H -0.261 1.261
27 C -0.191 4.191
28 C -0.044 4.044
29 H 0.062 0.938
30 H 0.055 0.945
31 H 0.066 0.934
32 H 0.070 0.930
33 H 0.049 0.951
34 H 0.050 0.950
35 H 0.126 0.874
36 H 0.052 0.948
37 H 0.129 0.871
38 H 0.098 0.902
39 H 0.089 0.911
40 H 0.403 0.597
41 H 0.074 0.926
42 H 0.064 0.936
43 H 0.132 0.868
44 H 0.109 0.891
45 H 0.285 0.715
46 H 0.131 0.869
47 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.355 6.100 -3.597 27.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.140 4.140
3 C 0.026 3.974
4 H 0.102 0.898
5 C -0.025 4.025
6 O -0.310 6.310
7 C -0.032 4.032
8 C -0.049 4.049
9 N -0.372 5.372
10 C 0.404 3.596
11 O -0.494 6.494
12 N -0.392 5.392
13 C 0.080 3.920
14 C -0.175 4.175
15 C -0.068 4.068
16 C -0.257 4.257
17 C 0.080 3.920
18 O -0.148 6.148
19 C -0.475 4.475
20 H 0.100 0.900
21 C -0.189 4.189
22 N -0.562 5.562
23 Si 0.793 3.207
24 H -0.190 1.190
25 H -0.195 1.195
26 H -0.186 1.186
27 C -0.210 4.210
28 C -0.062 4.062
29 H 0.081 0.919
30 H 0.075 0.925
31 H 0.085 0.915
32 H 0.088 0.912
33 H 0.068 0.932
34 H 0.068 0.932
35 H 0.143 0.857
36 H 0.071 0.929
37 H 0.147 0.853
38 H 0.117 0.883
39 H 0.108 0.892
40 H 0.240 0.760
41 H 0.092 0.908
42 H 0.082 0.918
43 H 0.150 0.850
44 H 0.127 0.873
45 H 0.095 0.905
46 H 0.149 0.851
47 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -26.519 5.575 -3.748 27.356
hybrid contribution 1.507 0.053 0.233 1.525
sum -25.012 5.628 -3.515 25.877
Atomic orbital electron populations
1.21952 0.94643 1.02288 1.02506 1.21792 0.95292 0.93471 1.03446
1.22042 0.77722 0.98257 0.99336 0.89758 1.23290 0.99308 0.84138
0.95731 1.87953 1.20037 1.28711 1.94288 1.23109 0.80874 1.03315
0.95860 1.22529 0.97816 0.84553 1.00042 1.47449 1.06742 1.06765
1.76210 1.16074 0.81867 0.83833 0.77789 1.90935 1.68485 1.30009
1.59964 1.45532 1.04599 1.13293 1.75735 1.19721 0.85341 0.85778
1.01205 1.19540 0.94969 1.09154 0.93826 1.20900 0.91691 0.95647
0.98537 1.21257 0.96844 1.09712 0.97861 1.19735 0.83686 0.93521
0.95032 1.83522 1.17073 1.76217 1.38033 1.20705 0.90441 1.47773
0.88627 0.89961 1.25297 0.95719 0.96291 1.01574 1.69725 1.08221
1.48777 1.29447 0.85214 0.77564 0.79148 0.78800 1.18970 1.19483
1.18566 1.20511 0.94355 1.09710 0.96438 1.20935 0.92677 0.94649
0.97933 0.91938 0.92545 0.91467 0.91160 0.93206 0.93169 0.85655
0.92940 0.85305 0.88348 0.89232 0.75960 0.90780 0.91765 0.85034
0.87284 0.90546 0.85080 0.82935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.06 9.73 71.98 0.70 -1.36 16
2 C -0.10 -1.98 3.89 30.59 0.12 -1.86 16
3 C 0.13 2.19 3.21 45.11 0.14 2.34 16
4 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
5 C 0.05 0.76 5.75 72.22 0.42 1.17 16
6 O -0.39 -6.31 10.74 -148.98 -1.60 -7.91 16
7 C 0.05 0.58 6.99 72.08 0.50 1.08 16
8 C 0.07 0.97 6.57 86.36 0.57 1.53 16
9 N -0.63 -11.83 3.01 -810.61 -2.44 -14.27 16
10 C 0.70 16.73 8.23 179.05 1.47 18.20 16
11 O -0.61 -18.30 11.90 -3.98 -0.05 -18.35 16
12 N -0.73 -15.53 5.46 -482.31 -2.63 -18.16 16
13 C 0.20 4.71 5.80 85.63 0.50 5.21 16
14 C -0.17 -4.65 5.25 -19.83 -0.10 -4.75 16
15 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16
16 C -0.24 -9.70 9.17 22.39 0.21 -9.50 16
17 C 0.13 5.67 6.65 22.58 0.15 5.82 16
18 O -0.24 -12.51 8.59 -22.76 -0.20 -12.71 16
19 C -0.40 -22.73 9.95 67.92 0.68 -22.06 16
20 H 0.08 4.91 5.44 -2.91 -0.02 4.89 16
21 C 0.01 0.56 5.49 84.83 0.47 1.03 16
22 N -0.92 -53.89 13.96 21.61 0.30 -53.59 16
23 Si 0.97 44.11 28.62 68.60 1.96 46.07 16
24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16
25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
26 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16
27 C -0.19 -6.60 9.99 22.39 0.22 -6.38 16
28 C -0.04 -1.18 9.69 22.25 0.22 -0.96 16
29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
31 H 0.07 0.67 6.43 -2.39 -0.02 0.66 16
32 H 0.07 1.75 6.26 -2.39 -0.01 1.74 16
33 H 0.05 1.19 7.28 -2.39 -0.02 1.17 16
34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16
35 H 0.13 1.27 6.83 -2.39 -0.02 1.25 16
36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
37 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16
38 H 0.10 1.11 5.78 -2.39 -0.01 1.10 16
39 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16
40 H 0.40 7.29 6.02 -92.71 -0.56 6.73 16
41 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16
42 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16
43 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16
44 H 0.11 4.99 5.64 -2.91 -0.02 4.97 16
45 H 0.28 15.30 8.31 -92.71 -0.77 14.52 16
46 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16
47 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16
Total: -1.00 -68.47 374.96 2.25 -66.21
By element:
Atomic # 1 Polarization: 24.09 SS G_CDS: 0.44 Total: 24.52 kcal
Atomic # 6 Polarization: -18.30 SS G_CDS: 6.47 Total: -11.83 kcal
Atomic # 7 Polarization: -81.25 SS G_CDS: -4.77 Total: -86.02 kcal
Atomic # 8 Polarization: -37.12 SS G_CDS: -1.84 Total: -38.96 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 1.96 Total: 46.07 kcal
Total: -68.47 2.25 -66.21 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000172148778.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.549 kcal
(2) G-P(sol) polarization free energy of solvation -68.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.014 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds