Wall clock time and date at job start Tue Mar 31 2020 18:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47069 * 2 1 4 4 H 1.09001 * 109.46973 * 54.99101 * 3 2 1 5 5 C 1.50696 * 109.46978 * 174.99808 * 3 2 1 6 6 H 1.08002 * 119.99919 * 120.00053 * 5 3 2 7 7 C 1.37878 * 120.00239 * 299.99430 * 5 3 2 8 8 N 1.31519 * 119.99795 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00282 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47427 * 89.99950 * 9 7 5 11 11 H 1.48500 * 109.47231 * 209.99999 * 9 7 5 12 12 H 1.48507 * 109.46923 * 329.99930 * 9 7 5 13 13 N 1.46505 * 109.46746 * 294.99486 * 3 2 1 14 14 C 1.34783 * 119.99731 * 84.99950 * 13 3 2 15 15 O 1.21280 * 119.99904 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99544 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.58772 * 14.00522 * 16 14 13 18 18 C 1.53198 * 109.58541 * 253.72044 * 16 14 13 19 19 C 1.53034 * 109.31396 * 185.43579 * 18 16 14 20 20 C 1.53042 * 109.53793 * 61.36975 * 19 18 16 21 21 C 1.53197 * 109.33548 * 298.61803 * 20 19 18 22 22 N 1.46923 * 109.70296 * 134.36611 * 16 14 13 23 23 C 1.34780 * 120.63173 * 353.48522 * 22 16 14 24 24 O 1.21696 * 119.99541 * 6.67731 * 23 22 16 25 25 C 1.46657 * 120.00032 * 186.68091 * 23 22 16 26 26 C 1.36542 * 125.98542 * 190.89289 * 25 23 22 27 27 C 1.40367 * 106.70945 * 179.97438 * 26 25 23 28 28 C 1.35133 * 107.11283 * 0.02562 * 27 26 25 29 29 O 1.33935 * 108.76853 * 359.74961 * 28 27 26 30 30 H 1.09003 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47826 * 300.00480 * 1 2 3 32 32 H 1.09004 * 109.46622 * 60.00696 * 1 2 3 33 33 H 1.08992 * 109.47826 * 239.99520 * 2 1 3 34 34 H 1.09006 * 109.47084 * 119.99046 * 2 1 3 35 35 H 0.96992 * 119.99892 * 179.97438 * 8 7 5 36 36 H 0.96993 * 119.99777 * 264.99817 * 13 3 2 37 37 H 1.09003 * 109.49234 * 65.48553 * 18 16 14 38 38 H 1.08997 * 109.50248 * 305.39297 * 18 16 14 39 39 H 1.08999 * 109.46479 * 301.35110 * 19 18 16 40 40 H 1.09003 * 109.45247 * 181.37931 * 19 18 16 41 41 H 1.08999 * 109.49663 * 58.58291 * 20 19 18 42 42 H 1.09001 * 109.50077 * 178.65293 * 20 19 18 43 43 H 1.09004 * 109.58293 * 174.43795 * 21 20 19 44 44 H 1.08994 * 109.58886 * 294.85957 * 21 20 19 45 45 H 1.08001 * 126.64961 * 359.95862 * 26 25 23 46 46 H 1.08001 * 126.44602 * 179.97438 * 27 26 25 47 47 H 1.07998 * 125.61745 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3368 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.4416 2.1144 2.0850 11 1 6.4394 -0.3096 2.1552 12 1 6.6135 0.8416 0.0280 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3672 15 8 -0.3397 2.6318 -0.4346 16 6 0.0367 3.3384 -2.6547 17 1 0.7350 3.0604 -3.4440 18 6 0.0544 4.8585 -2.4654 19 6 -0.4802 5.5325 -3.7310 20 6 -1.9259 5.0928 -3.9734 21 6 -1.9667 3.5755 -4.1803 22 7 -1.3219 2.9246 -3.0308 23 6 -1.9654 1.9665 -2.3347 24 8 -1.4734 1.5215 -1.3144 25 6 -3.2584 1.4603 -2.8068 26 6 -4.1097 0.6559 -2.1050 27 6 -5.2177 0.4203 -2.9339 28 6 -4.9966 1.0824 -4.0910 29 8 -3.8173 1.7121 -4.0086 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.8291 -0.0615 2.9496 36 1 2.2720 2.1231 -1.9978 37 1 1.0762 5.1902 -2.2804 38 1 -0.5748 5.1269 -1.6168 39 1 0.1348 5.2441 -4.5835 40 1 -0.4457 6.6150 -3.6081 41 1 -2.5365 5.3589 -3.1106 42 1 -2.3139 5.5917 -4.8615 43 1 -3.0027 3.2446 -4.2548 44 1 -1.4318 3.3167 -5.0940 45 1 -3.9596 0.2744 -1.1058 46 1 -6.0836 -0.1784 -2.6927 47 1 -5.6632 1.1043 -4.9404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183813449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:01 Heat of formation + Delta-G solvation = 10.894691 kcal Electronic energy + Delta-G solvation = -30910.934516 eV Core-core repulsion = 26870.379122 eV Total energy + Delta-G solvation = -4040.555394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.74770 -40.54646 -37.84288 -37.32510 -34.78579 -33.38711 -32.72884 -32.27572 -31.59063 -30.37752 -29.65886 -27.02796 -25.69484 -23.87395 -23.16619 -22.75248 -21.81540 -20.77283 -20.47902 -19.25904 -19.16276 -17.87070 -17.11194 -16.46576 -16.41767 -16.14132 -15.39431 -15.14022 -14.89895 -14.60211 -14.46155 -14.07622 -13.89789 -13.56454 -13.37352 -13.00185 -12.96703 -12.75508 -12.68252 -12.46511 -12.21619 -11.56214 -11.51922 -11.32921 -11.23153 -11.05716 -10.92266 -10.83915 -10.74563 -10.65037 -10.19373 -10.05685 -9.84471 -9.39556 -9.26561 -8.84683 -8.67280 -8.50304 -8.43311 -8.08084 -7.27732 -6.01334 -4.10710 1.13904 2.33537 2.58999 2.97951 3.27692 3.29632 3.36039 3.37971 3.89203 4.09650 4.42509 4.62346 4.67925 4.77694 4.85270 4.88752 4.96885 5.08525 5.18156 5.28908 5.37221 5.41718 5.63125 5.63564 5.68579 5.75071 5.78249 5.79487 5.89889 5.99537 6.03810 6.27671 6.30761 6.51714 6.70309 6.81872 6.86269 7.05078 7.37905 7.45865 7.48443 7.63913 7.74242 7.77193 7.95168 8.06203 8.32606 8.82720 8.85803 8.95310 9.39865 9.58173 11.03426 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.003748 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.545827 B = 7468.233021 C = 8871.996498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.125 4.125 3 C 0.277 3.723 4 H 0.046 0.954 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.487 3.513 15 O -0.483 6.483 16 C 0.132 3.868 17 H 0.084 0.916 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.135 4.135 21 C 0.103 3.897 22 N -0.600 5.600 23 C 0.552 3.448 24 O -0.416 6.416 25 C -0.060 4.060 26 C -0.131 4.131 27 C -0.220 4.220 28 C -0.032 4.032 29 O -0.164 6.164 30 H 0.007 0.993 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.024 0.976 34 H 0.091 0.909 35 H 0.263 0.737 36 H 0.383 0.617 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.159 0.841 46 H 0.152 0.848 47 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.571 6.659 -16.957 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.175 3.825 4 H 0.064 0.936 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.270 3.730 15 O -0.357 6.357 16 C 0.025 3.975 17 H 0.102 0.898 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.173 4.173 21 C -0.020 4.020 22 N -0.336 5.336 23 C 0.341 3.659 24 O -0.290 6.290 25 C -0.112 4.112 26 C -0.152 4.152 27 C -0.239 4.239 28 C -0.100 4.100 29 O -0.060 6.060 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.042 0.958 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.215 0.785 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.176 0.824 46 H 0.170 0.830 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -14.692 6.453 -15.690 22.443 hybrid contribution 1.056 -0.269 -0.288 1.127 sum -13.636 6.184 -15.978 21.897 Atomic orbital electron populations 1.22519 0.97171 0.97515 1.04241 1.21907 0.93567 0.99498 1.01388 1.18677 0.93627 0.89237 0.80918 0.93643 1.21274 0.91013 1.38727 1.06073 0.92265 1.24887 0.98356 0.94973 0.95527 1.69923 1.34932 1.37707 1.09316 0.86499 0.85221 0.77546 0.78094 1.20663 1.21166 1.19920 1.46334 1.14406 1.56779 1.18453 1.19668 0.83058 0.81210 0.89105 1.90709 1.48597 1.56312 1.40107 1.21239 0.83330 0.95608 0.97299 0.89776 1.21818 1.02814 0.92452 0.98963 1.21518 0.95912 1.00280 0.97769 1.21936 0.97638 0.95375 1.02387 1.22071 0.99450 0.92547 0.87902 1.47498 1.15941 1.38287 1.31834 1.17490 0.81681 0.81685 0.85037 1.91228 1.62285 1.54785 1.20730 1.22678 0.97526 1.05673 0.85296 1.21973 0.93039 0.98689 1.01477 1.21826 1.01380 1.05954 0.94763 1.24382 0.87374 0.97596 1.00697 1.84220 1.29922 1.57389 1.34512 0.97361 0.93961 0.88529 0.95755 0.89055 0.92731 0.78532 0.90098 0.90483 0.91619 0.91349 0.91373 0.90770 0.87951 0.91481 0.82354 0.83015 0.77918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 7.94 37.16 0.29 -3.67 16 2 C -0.12 -3.28 5.45 -26.73 -0.15 -3.43 16 3 C 0.28 7.29 2.24 -69.08 -0.15 7.14 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.49 8.73 -34.44 -0.30 -14.79 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.64 11.29 55.43 0.63 -25.01 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 13 N -0.71 -15.30 5.02 -54.93 -0.28 -15.58 16 14 C 0.49 9.92 4.63 -10.98 -0.05 9.87 16 15 O -0.48 -11.68 11.03 -20.71 -0.23 -11.91 16 16 C 0.13 1.98 3.29 -68.75 -0.23 1.76 16 17 H 0.08 1.09 7.99 -51.93 -0.41 0.68 16 18 C -0.12 -1.55 5.35 -26.61 -0.14 -1.69 16 19 C -0.12 -1.08 5.88 -26.69 -0.16 -1.24 16 20 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 21 C 0.10 1.07 6.10 -3.67 -0.02 1.05 16 22 N -0.60 -8.68 2.97 -168.02 -0.50 -9.18 16 23 C 0.55 9.51 7.45 -12.86 -0.10 9.42 16 24 O -0.42 -8.85 7.48 -21.07 -0.16 -9.00 16 25 C -0.06 -0.87 6.73 -36.80 -0.25 -1.12 16 26 C -0.13 -1.79 10.64 -39.39 -0.42 -2.21 16 27 C -0.22 -2.25 10.88 -39.89 -0.43 -2.68 16 28 C -0.03 -0.28 12.08 29.63 0.36 0.08 16 29 O -0.16 -1.87 7.32 4.98 0.04 -1.84 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 1.13 7.85 -51.93 -0.41 0.73 16 32 H 0.10 2.38 2.66 -57.43 -0.15 2.22 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 2.64 5.95 -51.93 -0.31 2.33 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.38 7.20 8.43 -40.82 -0.34 6.86 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 1.06 4.30 -52.62 -0.23 0.83 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.20 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -33.89 362.98 -8.91 -42.80 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.86 Total: 9.31 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.00 Total: -1.17 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.15 Total: -49.76 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.35 Total: -22.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.89 -8.91 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.693 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds