Wall clock time and date at job start Tue Mar 31 2020 18:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47069 * 2 1 4 4 H 1.09001 * 109.46973 * 54.99101 * 3 2 1 5 5 C 1.50696 * 109.46978 * 174.99808 * 3 2 1 6 6 H 1.08002 * 119.99919 * 120.00053 * 5 3 2 7 7 C 1.37878 * 120.00239 * 299.99430 * 5 3 2 8 8 N 1.31519 * 119.99795 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00282 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47427 * 89.99950 * 9 7 5 11 11 H 1.48500 * 109.47231 * 209.99999 * 9 7 5 12 12 H 1.48507 * 109.46923 * 329.99930 * 9 7 5 13 13 N 1.46505 * 109.46746 * 294.99486 * 3 2 1 14 14 C 1.34783 * 119.99731 * 84.99950 * 13 3 2 15 15 O 1.21280 * 119.99904 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99544 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.58772 * 14.00522 * 16 14 13 18 18 C 1.53198 * 109.58541 * 253.72044 * 16 14 13 19 19 C 1.53034 * 109.31396 * 185.43579 * 18 16 14 20 20 C 1.53042 * 109.53793 * 61.36975 * 19 18 16 21 21 C 1.53197 * 109.33548 * 298.61803 * 20 19 18 22 22 N 1.46923 * 109.70296 * 134.36611 * 16 14 13 23 23 C 1.34780 * 120.63173 * 353.48522 * 22 16 14 24 24 O 1.21696 * 119.99541 * 6.67731 * 23 22 16 25 25 C 1.46657 * 120.00032 * 186.68091 * 23 22 16 26 26 C 1.36542 * 125.98542 * 190.89289 * 25 23 22 27 27 C 1.40367 * 106.70945 * 179.97438 * 26 25 23 28 28 C 1.35133 * 107.11283 * 0.02562 * 27 26 25 29 29 O 1.33935 * 108.76853 * 359.74961 * 28 27 26 30 30 H 1.09003 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47826 * 300.00480 * 1 2 3 32 32 H 1.09004 * 109.46622 * 60.00696 * 1 2 3 33 33 H 1.08992 * 109.47826 * 239.99520 * 2 1 3 34 34 H 1.09006 * 109.47084 * 119.99046 * 2 1 3 35 35 H 0.96992 * 119.99892 * 179.97438 * 8 7 5 36 36 H 0.96993 * 119.99777 * 264.99817 * 13 3 2 37 37 H 1.09003 * 109.49234 * 65.48553 * 18 16 14 38 38 H 1.08997 * 109.50248 * 305.39297 * 18 16 14 39 39 H 1.08999 * 109.46479 * 301.35110 * 19 18 16 40 40 H 1.09003 * 109.45247 * 181.37931 * 19 18 16 41 41 H 1.08999 * 109.49663 * 58.58291 * 20 19 18 42 42 H 1.09001 * 109.50077 * 178.65293 * 20 19 18 43 43 H 1.09004 * 109.58293 * 174.43795 * 21 20 19 44 44 H 1.08994 * 109.58886 * 294.85957 * 21 20 19 45 45 H 1.08001 * 126.64961 * 359.95862 * 26 25 23 46 46 H 1.08001 * 126.44602 * 179.97438 * 27 26 25 47 47 H 1.07998 * 125.61745 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3368 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.4416 2.1144 2.0850 11 1 6.4394 -0.3096 2.1552 12 1 6.6135 0.8416 0.0280 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3672 15 8 -0.3397 2.6318 -0.4346 16 6 0.0367 3.3384 -2.6547 17 1 0.7350 3.0604 -3.4440 18 6 0.0544 4.8585 -2.4654 19 6 -0.4802 5.5325 -3.7310 20 6 -1.9259 5.0928 -3.9734 21 6 -1.9667 3.5755 -4.1803 22 7 -1.3219 2.9246 -3.0308 23 6 -1.9654 1.9665 -2.3347 24 8 -1.4734 1.5215 -1.3144 25 6 -3.2584 1.4603 -2.8068 26 6 -4.1097 0.6559 -2.1050 27 6 -5.2177 0.4203 -2.9339 28 6 -4.9966 1.0824 -4.0910 29 8 -3.8173 1.7121 -4.0086 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.8291 -0.0615 2.9496 36 1 2.2720 2.1231 -1.9978 37 1 1.0762 5.1902 -2.2804 38 1 -0.5748 5.1269 -1.6168 39 1 0.1348 5.2441 -4.5835 40 1 -0.4457 6.6150 -3.6081 41 1 -2.5365 5.3589 -3.1106 42 1 -2.3139 5.5917 -4.8615 43 1 -3.0027 3.2446 -4.2548 44 1 -1.4318 3.3167 -5.0940 45 1 -3.9596 0.2744 -1.1058 46 1 -6.0836 -0.1784 -2.6927 47 1 -5.6632 1.1043 -4.9404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183813449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:00 Heat of formation + Delta-G solvation = -11.810179 kcal Electronic energy + Delta-G solvation = -30911.919073 eV Core-core repulsion = 26870.379122 eV Total energy + Delta-G solvation = -4041.539951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.65921 -41.87090 -39.41961 -38.46115 -36.73262 -34.33006 -34.20820 -33.75430 -33.08609 -31.98548 -30.62433 -28.99056 -26.89655 -25.11017 -24.64182 -24.19954 -22.71028 -22.07013 -21.63916 -21.06576 -20.44536 -19.26400 -18.31767 -18.05120 -17.52867 -17.39429 -17.02023 -16.72534 -16.22908 -15.92771 -15.76155 -15.23912 -15.04625 -14.80336 -14.60943 -14.47174 -14.22175 -14.02213 -13.95504 -13.54158 -13.52247 -13.29331 -13.16139 -13.07834 -12.82304 -12.67198 -12.50008 -12.17288 -12.09694 -11.80935 -11.73025 -11.54515 -11.18582 -11.06334 -10.95950 -10.80554 -10.53954 -9.99965 -9.73944 -9.48022 -9.01147 -8.13421 -6.32077 0.12591 1.43246 1.44624 1.45401 1.54751 1.55703 1.88824 2.04697 2.36820 2.54150 2.67737 3.14684 3.62971 3.83962 3.88430 3.95552 3.99483 4.10260 4.15963 4.17436 4.28186 4.50790 4.53928 4.59668 4.70786 4.77840 4.84456 4.87877 4.92930 4.94206 4.99474 5.08837 5.13698 5.16791 5.24361 5.34120 5.44215 5.45006 5.51988 5.58200 5.72037 5.73936 5.88502 5.97543 6.04067 6.21087 6.35056 6.78319 7.13392 7.35364 7.44427 7.85857 8.91812 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.003748 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.545827 B = 7468.233021 C = 8871.996498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.290 3.710 4 H -0.011 1.011 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.974 3.026 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.711 5.711 14 C 0.480 3.520 15 O -0.524 6.524 16 C 0.138 3.862 17 H 0.116 0.884 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.131 4.131 21 C 0.097 3.903 22 N -0.596 5.596 23 C 0.545 3.455 24 O -0.477 6.477 25 C -0.090 4.090 26 C -0.145 4.145 27 C -0.234 4.234 28 C 0.002 3.998 29 O -0.158 6.158 30 H 0.015 0.985 31 H 0.006 0.994 32 H 0.115 0.885 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.263 0.737 36 H 0.399 0.601 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.137 0.863 46 H 0.178 0.822 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.018 7.920 -21.620 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C 0.186 3.814 4 H 0.006 0.994 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.189 4.189 8 N -0.557 5.557 9 Si 0.798 3.202 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.181 1.181 13 N -0.362 5.362 14 C 0.265 3.735 15 O -0.400 6.400 16 C 0.032 3.968 17 H 0.134 0.866 18 C -0.158 4.158 19 C -0.146 4.146 20 C -0.169 4.169 21 C -0.023 4.023 22 N -0.331 5.331 23 C 0.336 3.664 24 O -0.355 6.355 25 C -0.142 4.142 26 C -0.166 4.166 27 C -0.253 4.253 28 C -0.066 4.066 29 O -0.054 6.054 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.132 0.868 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.233 0.767 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.155 0.845 46 H 0.195 0.805 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -15.149 7.767 -20.438 26.599 hybrid contribution 0.974 -0.639 1.112 1.610 sum -14.175 7.127 -19.326 25.004 Atomic orbital electron populations 1.22433 0.96348 0.97696 1.03772 1.21756 0.94158 0.99532 1.00039 1.18154 0.93284 0.88591 0.81398 0.99354 1.21632 0.91443 1.38701 1.06641 0.90779 1.25871 1.03635 0.94390 0.95041 1.70109 1.37175 1.38538 1.09926 0.85323 0.78755 0.77397 0.78705 1.20226 1.21140 1.18136 1.46079 1.15582 1.57190 1.17351 1.20604 0.81782 0.80345 0.90742 1.90706 1.49510 1.57447 1.42376 1.21219 0.84444 0.96413 0.94745 0.86639 1.21837 1.02881 0.90877 1.00160 1.21522 0.96123 1.00832 0.96173 1.21948 0.97353 0.94357 1.03230 1.22415 0.99695 0.93230 0.86998 1.47719 1.15568 1.37513 1.32296 1.17851 0.82654 0.81599 0.84344 1.91088 1.64144 1.57230 1.23063 1.22055 0.97407 1.07679 0.87047 1.22120 0.94662 0.98543 1.01242 1.22129 1.01227 1.07189 0.94740 1.25441 0.85925 0.94056 1.01206 1.84207 1.30861 1.57579 1.32774 0.96579 0.97436 0.86819 0.95065 0.92095 0.92807 0.76725 0.89551 0.93577 0.89255 0.89686 0.93274 0.87181 0.87613 0.88854 0.84483 0.80475 0.72487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.92 7.94 71.98 0.57 -7.35 16 2 C -0.12 -6.47 5.45 30.60 0.17 -6.31 16 3 C 0.29 16.15 2.24 44.24 0.10 16.25 16 4 H -0.01 -0.76 7.58 -2.39 -0.02 -0.78 16 5 C -0.55 -30.49 8.73 25.60 0.22 -30.27 16 6 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 7 C 0.01 0.57 5.29 84.65 0.45 1.02 16 8 N -0.92 -56.05 11.29 21.45 0.24 -55.80 16 9 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 N -0.71 -31.76 5.02 -446.08 -2.24 -34.00 16 14 C 0.48 20.46 4.63 87.65 0.41 20.87 16 15 O -0.52 -27.45 11.03 22.09 0.24 -27.21 16 16 C 0.14 4.06 3.29 44.23 0.15 4.21 16 17 H 0.12 2.69 7.99 -2.39 -0.02 2.67 16 18 C -0.12 -2.90 5.35 30.67 0.16 -2.73 16 19 C -0.11 -1.62 5.88 30.62 0.18 -1.44 16 20 C -0.13 -1.88 6.08 30.67 0.19 -1.70 16 21 C 0.10 1.72 6.10 86.35 0.53 2.25 16 22 N -0.60 -16.82 2.97 -803.71 -2.39 -19.21 16 23 C 0.54 19.41 7.45 86.44 0.64 20.05 16 24 O -0.48 -21.75 7.48 20.78 0.16 -21.60 16 25 C -0.09 -2.62 6.73 24.07 0.16 -2.46 16 26 C -0.14 -4.05 10.64 22.39 0.24 -3.81 16 27 C -0.23 -4.26 10.88 22.07 0.24 -4.02 16 28 C 0.00 0.03 12.08 67.10 0.81 0.84 16 29 O -0.16 -3.18 7.32 -5.10 -0.04 -3.21 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.01 0.39 7.85 -2.39 -0.02 0.37 16 32 H 0.12 5.99 2.66 -89.58 -0.24 5.75 16 33 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 3.77 5.95 -2.38 -0.01 3.75 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.40 14.98 8.43 -92.71 -0.78 14.20 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 1.85 4.30 -13.44 -0.06 1.79 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 46 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.26 0.46 8.06 -2.91 -0.02 0.43 16 Total: -1.00 -83.04 362.98 3.15 -79.89 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.07 Total: 29.89 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.21 Total: 5.40 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.39 Total: -109.01 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: 0.36 Total: -52.02 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -83.04 3.15 -79.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.079 kcal (2) G-P(sol) polarization free energy of solvation -83.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds