Wall clock time and date at job start Tue Mar 31 2020 18:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46771 * 2 1 4 4 H 1.09000 * 109.47486 * 302.24420 * 3 2 1 5 5 C 1.50704 * 109.46753 * 182.24850 * 3 2 1 6 6 H 1.08004 * 119.99599 * 274.86303 * 5 3 2 7 7 C 1.37877 * 120.00235 * 94.86666 * 5 3 2 8 8 N 1.31509 * 119.99818 * 184.76085 * 7 5 3 9 9 Si 1.86802 * 119.99769 * 4.75606 * 7 5 3 10 10 H 1.48502 * 109.46791 * 94.72142 * 9 7 5 11 11 H 1.48497 * 109.46832 * 214.71819 * 9 7 5 12 12 H 1.48497 * 109.46986 * 334.72118 * 9 7 5 13 13 N 1.46496 * 109.47056 * 62.24940 * 3 2 1 14 14 C 1.34775 * 120.00131 * 274.99849 * 13 3 2 15 15 O 1.21283 * 119.99633 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00147 * 179.72649 * 14 13 3 17 17 H 1.08996 * 109.58744 * 1.86890 * 16 14 13 18 18 C 1.53188 * 109.58756 * 241.58494 * 16 14 13 19 19 C 1.53076 * 109.29811 * 185.72060 * 18 16 14 20 20 C 1.53038 * 109.66099 * 61.15335 * 19 18 16 21 21 C 1.53191 * 109.30965 * 298.70312 * 20 19 18 22 22 N 1.46927 * 108.77836 * 54.63405 * 21 20 19 23 23 C 1.34774 * 120.63075 * 126.36899 * 22 21 20 24 24 O 1.21699 * 120.00100 * 186.61542 * 23 22 21 25 25 C 1.46662 * 120.00146 * 6.61933 * 23 22 21 26 26 C 1.36539 * 125.98466 * 187.36067 * 25 23 22 27 27 C 1.40368 * 106.70654 * 179.97438 * 26 25 23 28 28 C 1.35130 * 107.11460 * 359.97438 * 27 26 25 29 29 O 1.33930 * 108.76596 * 359.75529 * 28 27 26 30 30 H 1.09002 * 109.47380 * 59.99416 * 1 2 3 31 31 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47053 * 299.99586 * 1 2 3 33 33 H 1.08997 * 109.46948 * 240.00660 * 2 1 3 34 34 H 1.08990 * 109.47181 * 120.00176 * 2 1 3 35 35 H 0.97002 * 119.99793 * 180.02562 * 8 7 5 36 36 H 0.97009 * 119.99905 * 94.99626 * 13 3 2 37 37 H 1.09002 * 109.49676 * 305.53132 * 18 16 14 38 38 H 1.09003 * 109.49770 * 65.62520 * 18 16 14 39 39 H 1.08999 * 109.34225 * 301.12651 * 19 18 16 40 40 H 1.08996 * 109.44158 * 181.24204 * 19 18 16 41 41 H 1.08995 * 109.50047 * 178.75085 * 20 19 18 42 42 H 1.08997 * 109.52215 * 58.66503 * 20 19 18 43 43 H 1.08999 * 109.59044 * 294.84161 * 21 20 19 44 44 H 1.09008 * 109.58675 * 174.41960 * 21 20 19 45 45 H 1.08003 * 126.65238 * 359.95137 * 26 25 23 46 46 H 1.08001 * 126.44373 * 179.97438 * 27 26 25 47 47 H 1.07999 * 125.61856 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6441 1.9679 -0.8692 5 6 3.5459 1.4429 -0.0557 6 1 4.1199 1.3516 0.8545 7 6 4.1909 1.5599 -1.2687 8 7 5.5013 1.4663 -1.3283 9 14 3.2033 1.8512 -2.8273 10 1 3.1460 3.3076 -3.1120 11 1 3.8534 1.1499 -3.9635 12 1 1.8256 1.3278 -2.6454 13 7 1.5963 2.1173 1.2223 14 6 0.3752 2.6854 1.2732 15 8 -0.3561 2.6385 0.3068 16 6 -0.0835 3.3741 2.5326 17 1 0.7116 3.3412 3.2775 18 6 -1.3288 2.6690 3.0792 19 6 -1.8724 3.4561 4.2742 20 6 -2.2689 4.8645 3.8256 21 6 -1.0322 5.5924 3.2895 22 7 -0.4212 4.7726 2.2343 23 6 -0.1757 5.2934 1.0157 24 8 0.2178 4.5755 0.1152 25 6 -0.3826 6.7252 0.7749 26 6 -0.3099 7.3540 -0.4349 27 6 -0.5754 8.7122 -0.2004 28 6 -0.7962 8.8511 1.1255 29 8 -0.6848 7.6507 1.7089 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.9551 1.5490 -2.1817 36 1 2.1814 2.1551 1.9951 37 1 -2.0905 2.6206 2.3010 38 1 -1.0660 1.6593 3.3949 39 1 -1.1024 3.5231 5.0428 40 1 -2.7457 2.9445 4.6787 41 1 -2.6761 5.4153 4.6735 42 1 -3.0211 4.7982 3.0397 43 1 -0.3161 5.7404 4.0979 44 1 -1.3262 6.5580 2.8779 45 1 -0.0903 6.8953 -1.3877 46 1 -0.5987 9.4985 -0.9404 47 1 -1.0289 9.7768 1.6308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183813461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:04 Heat of formation + Delta-G solvation = -31.574838 kcal Electronic energy + Delta-G solvation = -30873.012817 eV Core-core repulsion = 26830.615806 eV Total energy + Delta-G solvation = -4042.397011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.81865 -40.54403 -38.09110 -37.32665 -34.88747 -33.46183 -32.76939 -32.23795 -31.83702 -30.80280 -29.78409 -27.47893 -25.86475 -23.93444 -23.21672 -22.53761 -21.90862 -20.79921 -20.64877 -19.44802 -19.33764 -17.89636 -17.14084 -16.59467 -16.41301 -16.08382 -15.68268 -15.26076 -14.92557 -14.55708 -14.39947 -14.03384 -13.91894 -13.55578 -13.37252 -13.34694 -13.01342 -12.78176 -12.74245 -12.69415 -12.57741 -11.92737 -11.77649 -11.67444 -11.55342 -11.19397 -10.99977 -10.85038 -10.72770 -10.52848 -10.51107 -10.11655 -9.97516 -9.70191 -9.36684 -9.02982 -8.87337 -8.71595 -8.57810 -8.52517 -7.65439 -6.12606 -4.14561 1.06939 2.29353 2.45964 2.92261 3.27679 3.37125 3.45134 3.56281 3.80890 4.01006 4.45383 4.50080 4.62458 4.72650 4.79474 4.83496 4.90096 5.01358 5.13536 5.23158 5.32729 5.36422 5.57452 5.58306 5.63222 5.69808 5.72661 5.73470 5.84757 5.93709 5.99255 6.16853 6.18444 6.23046 6.25318 6.37080 6.50370 6.75185 6.79306 6.91109 7.13300 7.15605 7.35594 7.42985 7.56849 7.78466 8.22597 8.31262 8.77120 8.89708 9.31638 9.52377 10.99215 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.004775 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.357798 B = 5862.574440 C = 7514.101294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.239 3.761 4 H 0.057 0.943 5 C -0.525 4.525 6 H 0.076 0.924 7 C 0.081 3.919 8 N -0.893 5.893 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.703 5.703 14 C 0.513 3.487 15 O -0.518 6.518 16 C 0.128 3.872 17 H 0.085 0.915 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.135 4.135 21 C 0.099 3.901 22 N -0.598 5.598 23 C 0.582 3.418 24 O -0.454 6.454 25 C -0.065 4.065 26 C -0.125 4.125 27 C -0.220 4.220 28 C -0.026 4.026 29 O -0.161 6.161 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.266 0.734 36 H 0.386 0.614 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.159 0.841 46 H 0.154 0.846 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.804 12.517 12.312 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.136 3.864 4 H 0.075 0.925 5 C -0.564 4.564 6 H 0.094 0.906 7 C -0.122 4.122 8 N -0.530 5.530 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.179 1.179 13 N -0.353 5.353 14 C 0.297 3.703 15 O -0.394 6.394 16 C 0.021 3.979 17 H 0.103 0.897 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.173 4.173 21 C -0.023 4.023 22 N -0.334 5.334 23 C 0.369 3.631 24 O -0.326 6.326 25 C -0.117 4.117 26 C -0.145 4.145 27 C -0.239 4.239 28 C -0.095 4.095 29 O -0.058 6.058 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.219 0.781 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.123 0.877 45 H 0.177 0.823 46 H 0.172 0.828 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -15.958 11.976 11.248 22.904 hybrid contribution -0.008 0.532 -0.551 0.766 sum -15.965 12.508 10.698 22.930 Atomic orbital electron populations 1.21885 0.97529 0.98475 1.01986 1.22058 0.93592 0.99796 1.00884 1.19170 0.94459 0.88421 0.84319 0.92523 1.21040 0.88664 1.51393 0.95255 0.90617 1.24915 0.94722 0.93654 0.98947 1.69898 1.07768 1.49113 1.26188 0.86892 0.81314 0.79154 0.82737 1.20095 1.21388 1.17922 1.46444 1.14838 1.56119 1.17867 1.19637 0.83295 0.79441 0.87916 1.90660 1.54539 1.58384 1.35803 1.21333 0.97967 0.81177 0.97418 0.89679 1.21822 0.96887 0.98882 0.98385 1.21525 1.01146 0.95393 0.97459 1.21926 0.97688 0.96479 1.01185 1.22145 0.94707 0.94909 0.90529 1.47669 1.62836 1.10908 1.12017 1.16923 0.79516 0.83667 0.83026 1.91256 1.43322 1.55553 1.42454 1.22337 1.11080 0.90004 0.88239 1.22013 1.00542 0.93479 0.98481 1.21837 1.08260 0.97189 0.96607 1.24438 1.03619 0.87992 0.93475 1.84197 1.68201 1.16405 1.37011 0.92923 0.95395 0.93477 0.92478 0.93190 0.92470 0.78101 0.90283 0.90242 0.91564 0.91302 0.90619 0.91366 0.91190 0.87679 0.82284 0.82834 0.77688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.47 37.16 0.31 -2.62 16 2 C -0.12 -2.82 5.61 -26.73 -0.15 -2.97 16 3 C 0.24 5.97 1.90 -69.08 -0.13 5.84 16 4 H 0.06 1.60 4.51 -51.93 -0.23 1.36 16 5 C -0.53 -14.77 9.05 -34.44 -0.31 -15.08 16 6 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 7 C 0.08 2.38 5.47 -17.82 -0.10 2.29 16 8 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 9 Si 0.87 22.99 27.30 -169.99 -4.64 18.35 16 10 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.70 6.38 56.52 0.36 -6.34 16 13 N -0.70 -15.02 4.99 -54.93 -0.27 -15.29 16 14 C 0.51 10.34 3.24 -10.99 -0.04 10.30 16 15 O -0.52 -12.23 11.04 -20.02 -0.22 -12.45 16 16 C 0.13 1.92 3.31 -68.75 -0.23 1.69 16 17 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 18 C -0.12 -1.48 5.34 -26.60 -0.14 -1.63 16 19 C -0.12 -1.04 5.88 -26.67 -0.16 -1.20 16 20 C -0.13 -1.17 6.09 -26.61 -0.16 -1.33 16 21 C 0.10 1.03 6.13 -3.71 -0.02 1.01 16 22 N -0.60 -8.82 2.97 -168.07 -0.50 -9.32 16 23 C 0.58 10.47 7.50 -12.86 -0.10 10.38 16 24 O -0.45 -10.40 11.98 -20.38 -0.24 -10.64 16 25 C -0.06 -0.98 6.78 -36.80 -0.25 -1.23 16 26 C -0.12 -1.77 10.63 -39.39 -0.42 -2.19 16 27 C -0.22 -2.29 10.87 -39.89 -0.43 -2.72 16 28 C -0.03 -0.23 12.08 29.63 0.36 0.12 16 29 O -0.16 -1.86 7.22 5.00 0.04 -1.83 16 30 H 0.05 1.19 7.68 -51.93 -0.40 0.79 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.95 5.71 -51.93 -0.30 0.65 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.39 7.37 8.44 -40.82 -0.34 7.03 16 37 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.11 1.07 4.18 -53.35 -0.22 0.85 16 45 H 0.16 2.36 8.06 -52.48 -0.42 1.94 16 46 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 47 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -36.08 368.64 -8.47 -44.56 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.00 Total: 6.89 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.96 Total: 0.67 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.00 Total: -51.10 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.43 Total: -24.92 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.64 Total: 18.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.08 -8.47 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.981 kcal (2) G-P(sol) polarization free energy of solvation -36.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds