Wall clock time and date at job start Tue Mar 31 2020 18:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46771 * 2 1 4 4 H 1.09000 * 109.47486 * 302.24420 * 3 2 1 5 5 C 1.50704 * 109.46753 * 182.24850 * 3 2 1 6 6 H 1.08004 * 119.99599 * 274.86303 * 5 3 2 7 7 C 1.37877 * 120.00235 * 94.86666 * 5 3 2 8 8 N 1.31509 * 119.99818 * 184.76085 * 7 5 3 9 9 Si 1.86802 * 119.99769 * 4.75606 * 7 5 3 10 10 H 1.48502 * 109.46791 * 94.72142 * 9 7 5 11 11 H 1.48497 * 109.46832 * 214.71819 * 9 7 5 12 12 H 1.48497 * 109.46986 * 334.72118 * 9 7 5 13 13 N 1.46496 * 109.47056 * 62.24940 * 3 2 1 14 14 C 1.34775 * 120.00131 * 274.99849 * 13 3 2 15 15 O 1.21283 * 119.99633 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00147 * 179.72649 * 14 13 3 17 17 H 1.08996 * 109.58744 * 1.86890 * 16 14 13 18 18 C 1.53188 * 109.58756 * 241.58494 * 16 14 13 19 19 C 1.53076 * 109.29811 * 185.72060 * 18 16 14 20 20 C 1.53038 * 109.66099 * 61.15335 * 19 18 16 21 21 C 1.53191 * 109.30965 * 298.70312 * 20 19 18 22 22 N 1.46927 * 108.77836 * 54.63405 * 21 20 19 23 23 C 1.34774 * 120.63075 * 126.36899 * 22 21 20 24 24 O 1.21699 * 120.00100 * 186.61542 * 23 22 21 25 25 C 1.46662 * 120.00146 * 6.61933 * 23 22 21 26 26 C 1.36539 * 125.98466 * 187.36067 * 25 23 22 27 27 C 1.40368 * 106.70654 * 179.97438 * 26 25 23 28 28 C 1.35130 * 107.11460 * 359.97438 * 27 26 25 29 29 O 1.33930 * 108.76596 * 359.75529 * 28 27 26 30 30 H 1.09002 * 109.47380 * 59.99416 * 1 2 3 31 31 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47053 * 299.99586 * 1 2 3 33 33 H 1.08997 * 109.46948 * 240.00660 * 2 1 3 34 34 H 1.08990 * 109.47181 * 120.00176 * 2 1 3 35 35 H 0.97002 * 119.99793 * 180.02562 * 8 7 5 36 36 H 0.97009 * 119.99905 * 94.99626 * 13 3 2 37 37 H 1.09002 * 109.49676 * 305.53132 * 18 16 14 38 38 H 1.09003 * 109.49770 * 65.62520 * 18 16 14 39 39 H 1.08999 * 109.34225 * 301.12651 * 19 18 16 40 40 H 1.08996 * 109.44158 * 181.24204 * 19 18 16 41 41 H 1.08995 * 109.50047 * 178.75085 * 20 19 18 42 42 H 1.08997 * 109.52215 * 58.66503 * 20 19 18 43 43 H 1.08999 * 109.59044 * 294.84161 * 21 20 19 44 44 H 1.09008 * 109.58675 * 174.41960 * 21 20 19 45 45 H 1.08003 * 126.65238 * 359.95137 * 26 25 23 46 46 H 1.08001 * 126.44373 * 179.97438 * 27 26 25 47 47 H 1.07999 * 125.61856 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6441 1.9679 -0.8692 5 6 3.5459 1.4429 -0.0557 6 1 4.1199 1.3516 0.8545 7 6 4.1909 1.5599 -1.2687 8 7 5.5013 1.4663 -1.3283 9 14 3.2033 1.8512 -2.8273 10 1 3.1460 3.3076 -3.1120 11 1 3.8534 1.1499 -3.9635 12 1 1.8256 1.3278 -2.6454 13 7 1.5963 2.1173 1.2223 14 6 0.3752 2.6854 1.2732 15 8 -0.3561 2.6385 0.3068 16 6 -0.0835 3.3741 2.5326 17 1 0.7116 3.3412 3.2775 18 6 -1.3288 2.6690 3.0792 19 6 -1.8724 3.4561 4.2742 20 6 -2.2689 4.8645 3.8256 21 6 -1.0322 5.5924 3.2895 22 7 -0.4212 4.7726 2.2343 23 6 -0.1757 5.2934 1.0157 24 8 0.2178 4.5755 0.1152 25 6 -0.3826 6.7252 0.7749 26 6 -0.3099 7.3540 -0.4349 27 6 -0.5754 8.7122 -0.2004 28 6 -0.7962 8.8511 1.1255 29 8 -0.6848 7.6507 1.7089 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.9551 1.5490 -2.1817 36 1 2.1814 2.1551 1.9951 37 1 -2.0905 2.6206 2.3010 38 1 -1.0660 1.6593 3.3949 39 1 -1.1024 3.5231 5.0428 40 1 -2.7457 2.9445 4.6787 41 1 -2.6761 5.4153 4.6735 42 1 -3.0211 4.7982 3.0397 43 1 -0.3161 5.7404 4.0979 44 1 -1.3262 6.5580 2.8779 45 1 -0.0903 6.8953 -1.3877 46 1 -0.5987 9.4985 -0.9404 47 1 -1.0289 9.7768 1.6308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183813461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:03 Heat of formation + Delta-G solvation = -56.610474 kcal Electronic energy + Delta-G solvation = -30874.098443 eV Core-core repulsion = 26830.615806 eV Total energy + Delta-G solvation = -4043.482637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.74854 -41.84383 -39.66514 -38.46412 -36.74392 -34.39633 -34.36393 -33.80000 -33.35151 -32.14751 -30.73334 -29.44518 -26.97633 -25.06770 -24.64559 -24.04101 -22.82509 -22.07621 -21.77134 -21.15180 -20.57808 -19.43311 -18.56725 -17.91608 -17.51690 -17.35223 -17.13660 -16.93657 -16.01764 -15.98326 -15.91077 -15.29169 -15.08203 -14.82951 -14.75869 -14.58700 -14.44189 -14.12964 -14.00852 -13.84791 -13.77398 -13.59511 -13.57629 -13.17099 -13.01024 -12.56586 -12.51142 -12.30761 -12.03826 -11.89381 -11.77300 -11.71357 -11.54508 -11.16509 -11.05932 -10.88748 -10.79714 -10.32717 -9.94064 -9.57045 -9.41482 -8.42176 -6.44753 0.02904 1.20652 1.26289 1.35684 1.41163 1.42501 1.88440 2.03335 2.23968 2.40540 2.51366 3.00316 3.52540 3.79520 3.83703 3.91238 3.92772 4.06180 4.09714 4.13486 4.23917 4.33924 4.41569 4.46298 4.53123 4.58642 4.73172 4.81822 4.84431 4.87518 4.88165 4.95364 5.06876 5.08943 5.12497 5.20827 5.28354 5.30981 5.35984 5.43499 5.46559 5.50400 5.56911 5.82878 5.90193 6.16725 6.23076 6.59293 6.96774 7.07165 7.22139 7.75878 8.73219 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.004775 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.357798 B = 5862.574440 C = 7514.101294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.120 4.120 3 C 0.246 3.754 4 H 0.022 0.978 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.037 3.963 8 N -0.929 5.929 9 Si 0.921 3.079 10 H -0.286 1.286 11 H -0.270 1.270 12 H -0.261 1.261 13 N -0.708 5.708 14 C 0.511 3.489 15 O -0.554 6.554 16 C 0.129 3.871 17 H 0.112 0.888 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.130 4.130 21 C 0.092 3.908 22 N -0.594 5.594 23 C 0.571 3.429 24 O -0.524 6.524 25 C -0.097 4.097 26 C -0.141 4.141 27 C -0.233 4.233 28 C 0.009 3.991 29 O -0.154 6.154 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.269 0.731 36 H 0.397 0.603 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.136 0.864 46 H 0.181 0.819 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.897 14.481 15.498 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.142 3.858 4 H 0.040 0.960 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.163 4.163 8 N -0.568 5.568 9 Si 0.747 3.253 10 H -0.213 1.213 11 H -0.196 1.196 12 H -0.185 1.185 13 N -0.359 5.359 14 C 0.297 3.703 15 O -0.431 6.431 16 C 0.023 3.977 17 H 0.130 0.870 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.168 4.168 21 C -0.028 4.028 22 N -0.328 5.328 23 C 0.359 3.641 24 O -0.402 6.402 25 C -0.148 4.148 26 C -0.162 4.162 27 C -0.252 4.252 28 C -0.059 4.059 29 O -0.050 6.050 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.231 0.769 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.127 0.873 45 H 0.154 0.846 46 H 0.198 0.802 47 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -18.081 13.952 14.509 27.057 hybrid contribution 0.587 0.086 -1.460 1.576 sum -17.495 14.037 13.049 25.950 Atomic orbital electron populations 1.21720 0.95820 1.00060 1.00874 1.21947 0.95029 0.97956 1.01034 1.18842 0.92341 0.89795 0.84871 0.96027 1.21270 0.90324 1.49946 0.94357 0.92440 1.25476 0.95367 0.94099 1.01327 1.69968 1.08806 1.51041 1.27009 0.86128 0.80048 0.78293 0.80797 1.21291 1.19558 1.18517 1.46212 1.15969 1.56716 1.16983 1.20415 0.82129 0.78455 0.89283 1.90635 1.55525 1.59177 1.37811 1.21385 1.00105 0.81407 0.94822 0.87017 1.21840 0.94684 0.99908 0.99052 1.21539 1.02385 0.94880 0.95997 1.21938 0.96294 0.96703 1.01834 1.22510 0.95881 0.94630 0.89747 1.47883 1.61899 1.10990 1.12071 1.17393 0.78729 0.84755 0.83206 1.91207 1.46862 1.57594 1.44527 1.21752 1.14426 0.89522 0.89118 1.22166 1.00631 0.95792 0.97661 1.22144 1.08954 0.95746 0.98354 1.25543 0.99109 0.88216 0.93045 1.84192 1.67911 1.16829 1.36116 0.95596 0.92265 0.93078 0.93626 0.91640 0.92137 0.76886 0.93062 0.89202 0.89444 0.89372 0.87029 0.93069 0.88784 0.87343 0.84636 0.80206 0.72038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 8.47 71.98 0.61 -4.70 16 2 C -0.12 -5.53 5.61 30.59 0.17 -5.36 16 3 C 0.25 12.73 1.90 44.25 0.08 12.81 16 4 H 0.02 1.29 4.51 -2.39 -0.01 1.28 16 5 C -0.52 -30.27 9.05 25.60 0.23 -30.04 16 6 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 7 C 0.04 2.26 5.47 84.66 0.46 2.72 16 8 N -0.93 -58.28 13.96 21.45 0.30 -57.98 16 9 Si 0.92 49.58 27.30 68.60 1.87 51.45 16 10 H -0.29 -15.79 7.11 99.48 0.71 -15.09 16 11 H -0.27 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.26 -14.16 6.38 99.48 0.63 -13.52 16 13 N -0.71 -31.07 4.99 -446.10 -2.23 -33.30 16 14 C 0.51 21.17 3.24 87.66 0.28 21.45 16 15 O -0.55 -27.55 11.04 21.41 0.24 -27.31 16 16 C 0.13 3.78 3.31 44.23 0.15 3.92 16 17 H 0.11 2.66 7.92 -2.39 -0.02 2.64 16 18 C -0.12 -2.66 5.34 30.68 0.16 -2.49 16 19 C -0.11 -1.53 5.88 30.63 0.18 -1.35 16 20 C -0.13 -1.78 6.09 30.67 0.19 -1.60 16 21 C 0.09 1.65 6.13 86.36 0.53 2.18 16 22 N -0.59 -17.19 2.97 -803.88 -2.39 -19.58 16 23 C 0.57 21.38 7.50 86.44 0.65 22.03 16 24 O -0.52 -25.83 11.98 20.11 0.24 -25.59 16 25 C -0.10 -2.94 6.78 24.07 0.16 -2.78 16 26 C -0.14 -4.16 10.63 22.39 0.24 -3.92 16 27 C -0.23 -4.38 10.87 22.07 0.24 -4.14 16 28 C 0.01 0.13 12.08 67.10 0.81 0.94 16 29 O -0.15 -3.18 7.22 -5.01 -0.04 -3.22 16 30 H 0.02 1.19 7.68 -2.39 -0.02 1.17 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 2.06 5.71 -2.38 -0.01 2.04 16 33 H 0.04 2.16 8.14 -2.39 -0.02 2.15 16 34 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 36 H 0.40 15.37 8.44 -92.70 -0.78 14.59 16 37 H 0.05 1.46 8.00 -2.39 -0.02 1.44 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.11 1.91 4.18 -24.95 -0.10 1.80 16 45 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 46 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 47 H 0.26 0.40 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -86.35 368.64 3.19 -83.17 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.04 Total: 22.68 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.15 Total: 9.68 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -4.32 Total: -110.86 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: 0.44 Total: -56.12 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.87 Total: 51.45 kcal Total: -86.35 3.19 -83.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.555 kcal (2) G-P(sol) polarization free energy of solvation -86.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds