Wall clock time and date at job start Tue Mar 31 2020 18:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46906 * 2 1 4 4 H 1.09002 * 109.47452 * 305.00229 * 3 2 1 5 5 C 1.50700 * 109.47391 * 185.00142 * 3 2 1 6 6 H 1.08004 * 119.99891 * 240.00402 * 5 3 2 7 7 C 1.37868 * 120.00045 * 59.99544 * 5 3 2 8 8 N 1.31516 * 120.00047 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00253 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46842 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46939 * 120.00069 * 9 7 5 12 12 H 1.48498 * 109.47268 * 240.00438 * 9 7 5 13 13 N 1.46499 * 109.47331 * 64.99828 * 3 2 1 14 14 C 1.34776 * 120.00330 * 275.00354 * 13 3 2 15 15 O 1.21287 * 119.99964 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00284 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.58910 * 336.43027 * 16 14 13 18 18 C 1.53199 * 109.58750 * 96.85588 * 16 14 13 19 19 C 1.53044 * 109.31369 * 174.41837 * 18 16 14 20 20 C 1.53036 * 109.54009 * 298.63892 * 19 18 16 21 21 C 1.53196 * 109.31560 * 61.36440 * 20 19 18 22 22 N 1.46925 * 108.77169 * 305.36368 * 21 20 19 23 23 C 1.34774 * 120.62886 * 233.57958 * 22 21 20 24 24 O 1.21702 * 119.99871 * 196.31012 * 23 22 21 25 25 C 1.46654 * 120.00182 * 16.32492 * 23 22 21 26 26 C 1.36540 * 125.99099 * 187.06693 * 25 23 22 27 27 C 1.40359 * 106.70717 * 179.97438 * 26 25 23 28 28 C 1.35127 * 107.12053 * 359.97438 * 27 26 25 29 29 O 1.33939 * 108.76268 * 359.77177 * 28 27 26 30 30 H 1.09010 * 109.47366 * 299.99966 * 1 2 3 31 31 H 1.08997 * 109.47547 * 60.00018 * 1 2 3 32 32 H 1.09007 * 109.47094 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47622 * 240.00382 * 2 1 3 34 34 H 1.09006 * 109.47284 * 119.99417 * 2 1 3 35 35 H 0.96997 * 120.00046 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99943 * 95.00207 * 13 3 2 37 37 H 1.08994 * 109.49763 * 294.37452 * 18 16 14 38 38 H 1.09004 * 109.49300 * 54.47637 * 18 16 14 39 39 H 1.09001 * 109.46034 * 178.61360 * 19 18 16 40 40 H 1.09009 * 109.44543 * 58.65225 * 19 18 16 41 41 H 1.08992 * 109.50110 * 301.41187 * 20 19 18 42 42 H 1.09002 * 109.49671 * 181.31485 * 20 19 18 43 43 H 1.08991 * 109.58759 * 185.57562 * 21 20 19 44 44 H 1.09004 * 109.58719 * 65.14637 * 21 20 19 45 45 H 1.08000 * 126.64380 * 359.97438 * 26 25 23 46 46 H 1.08007 * 126.44005 * 180.02562 * 27 26 25 47 47 H 1.07994 * 125.61894 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2279 8 7 3.4061 0.3375 -2.1732 9 14 6.0049 0.8803 -1.3812 10 1 6.5987 1.5445 -0.1931 11 1 6.4961 -0.5187 -1.4626 12 1 6.3998 1.6160 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3395 2.6326 0.4341 16 6 0.0361 3.3377 2.6548 17 1 0.6248 2.9314 3.4772 18 6 0.2783 4.8462 2.5421 19 6 -0.2568 5.5399 3.7970 20 6 -1.7639 5.2998 3.9113 21 6 -2.0293 3.7965 4.0395 22 7 -1.3922 3.1059 2.9100 23 6 -2.1043 2.2750 2.1232 24 8 -1.5310 1.4898 1.3912 25 6 -3.5700 2.3174 2.1489 26 6 -4.4091 1.4488 1.5119 27 6 -5.7176 1.8609 1.8088 28 6 -5.6212 2.9489 2.6044 29 8 -4.3255 3.2177 2.8114 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8292 -0.0609 -2.9498 36 1 2.2718 2.1233 1.9978 37 1 1.3474 5.0370 2.4488 38 1 -0.2389 5.2331 1.6641 39 1 -0.0635 6.6105 3.7305 40 1 0.2433 5.1346 4.6768 41 1 -2.2618 5.6824 3.0205 42 1 -2.1483 5.8136 4.7925 43 1 -3.1034 3.6123 4.0217 44 1 -1.6090 3.4298 4.9760 45 1 -4.1217 0.6076 0.8985 46 1 -6.6301 1.3953 1.4664 47 1 -6.4520 3.5070 3.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183813492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:10 Heat of formation + Delta-G solvation = -8.066948 kcal Electronic energy + Delta-G solvation = -30893.398495 eV Core-core repulsion = 26852.020863 eV Total energy + Delta-G solvation = -4041.377632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72759 -40.52769 -37.87420 -37.32103 -34.79856 -33.35601 -32.69692 -32.31182 -31.59623 -30.38018 -29.65832 -27.03486 -25.68723 -23.87029 -23.16097 -22.74580 -21.80692 -20.73193 -20.49398 -19.23072 -19.20124 -17.91592 -17.09313 -16.51434 -16.29362 -16.06365 -15.46893 -15.08467 -14.83372 -14.66734 -14.49890 -14.09102 -13.91388 -13.62612 -13.36056 -13.03528 -12.95147 -12.75920 -12.57996 -12.48025 -12.15586 -11.56038 -11.41161 -11.32746 -11.16377 -11.02774 -10.94217 -10.84454 -10.74486 -10.64666 -10.19330 -10.05665 -9.92782 -9.55603 -8.99283 -8.91495 -8.83156 -8.57943 -8.44728 -8.22775 -7.45753 -6.02147 -4.11579 1.15956 2.35774 2.59139 3.02118 3.28356 3.35357 3.36729 3.38704 3.81099 4.07577 4.41469 4.62419 4.68188 4.78194 4.84596 4.90366 4.97279 5.08630 5.17480 5.28263 5.37327 5.41573 5.62687 5.64826 5.67582 5.74810 5.78750 5.80067 5.89360 5.99072 6.05678 6.25679 6.31407 6.49565 6.71050 6.82944 6.86882 7.05714 7.36022 7.46086 7.49484 7.62879 7.70406 7.76365 7.92886 8.05148 8.32231 8.82708 8.88837 8.96305 9.34053 9.56350 11.02662 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.003682 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.224114 B = 7602.265543 C = 8974.419051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.046 0.954 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.708 5.708 14 C 0.499 3.501 15 O -0.507 6.507 16 C 0.132 3.868 17 H 0.086 0.914 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.134 4.134 21 C 0.104 3.896 22 N -0.607 5.607 23 C 0.573 3.427 24 O -0.429 6.429 25 C -0.056 4.056 26 C -0.131 4.131 27 C -0.221 4.221 28 C -0.031 4.031 29 O -0.163 6.163 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.008 0.992 33 H 0.091 0.909 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.384 0.616 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.159 0.841 46 H 0.152 0.848 47 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 8.759 15.567 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.064 0.936 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.356 5.356 14 C 0.282 3.718 15 O -0.383 6.383 16 C 0.025 3.975 17 H 0.104 0.896 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.172 4.172 21 C -0.019 4.019 22 N -0.343 5.343 23 C 0.361 3.639 24 O -0.303 6.303 25 C -0.108 4.108 26 C -0.151 4.151 27 C -0.240 4.240 28 C -0.099 4.099 29 O -0.059 6.059 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.216 0.784 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.085 0.915 45 H 0.176 0.824 46 H 0.170 0.830 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.118 8.405 14.420 22.519 hybrid contribution 1.039 -0.141 0.120 1.055 sum -14.079 8.264 14.540 21.861 Atomic orbital electron populations 1.22385 0.97129 0.97634 1.04190 1.21896 0.93620 0.99396 1.01416 1.18703 0.93689 0.89311 0.80834 0.93644 1.21303 0.90965 1.38694 1.06086 0.92188 1.24888 0.98379 0.94979 0.95512 1.69935 1.34845 1.37748 1.09316 0.86443 0.85210 0.77700 0.78008 1.19792 1.20964 1.20981 1.46333 1.14296 1.56478 1.18514 1.19726 0.83030 0.80330 0.88731 1.90739 1.49556 1.57522 1.40439 1.21159 0.81730 0.96565 0.98039 0.89601 1.21814 1.02378 0.92587 0.99241 1.21522 0.95522 1.00623 0.97818 1.21913 0.96860 0.95863 1.02590 1.22021 0.99396 0.92134 0.88311 1.47457 1.09130 1.46636 1.31120 1.17149 0.82693 0.82991 0.81053 1.90931 1.66443 1.34900 1.37988 1.22501 0.92273 0.93895 1.02130 1.21969 0.91645 1.00765 1.00759 1.21820 0.98484 0.99590 1.04083 1.24375 0.84522 0.99263 1.01786 1.84190 1.16959 1.47552 1.57223 0.88531 0.94153 0.97321 0.89081 0.95678 0.92776 0.78418 0.89952 0.90674 0.91349 0.91603 0.91306 0.90862 0.88055 0.91502 0.82380 0.83013 0.77909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 8.02 37.16 0.30 -3.66 16 2 C -0.12 -3.28 5.45 -26.73 -0.15 -3.42 16 3 C 0.28 7.27 2.24 -69.08 -0.15 7.12 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.62 11.29 55.43 0.63 -25.00 16 9 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.71 -15.21 5.02 -54.93 -0.28 -15.49 16 14 C 0.50 10.19 4.66 -10.99 -0.05 10.13 16 15 O -0.51 -12.31 10.83 -20.45 -0.22 -12.53 16 16 C 0.13 1.98 3.27 -68.75 -0.23 1.75 16 17 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 18 C -0.12 -1.53 5.35 -26.61 -0.14 -1.67 16 19 C -0.12 -1.07 5.88 -26.69 -0.16 -1.23 16 20 C -0.13 -1.19 6.08 -26.61 -0.16 -1.36 16 21 C 0.10 1.08 6.22 -3.71 -0.02 1.06 16 22 N -0.61 -8.83 2.97 -168.07 -0.50 -9.33 16 23 C 0.57 9.98 6.80 -12.86 -0.09 9.89 16 24 O -0.43 -9.15 8.58 -20.81 -0.18 -9.33 16 25 C -0.06 -0.83 6.76 -36.80 -0.25 -1.08 16 26 C -0.13 -1.81 10.63 -39.40 -0.42 -2.23 16 27 C -0.22 -2.29 10.87 -39.89 -0.43 -2.72 16 28 C -0.03 -0.28 12.08 29.63 0.36 0.08 16 29 O -0.16 -1.91 7.42 4.97 0.04 -1.87 16 30 H 0.10 2.39 2.61 -56.51 -0.15 2.24 16 31 H 0.04 1.09 7.85 -51.93 -0.41 0.68 16 32 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.09 2.64 5.95 -51.93 -0.31 2.33 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.38 7.16 8.51 -40.82 -0.35 6.82 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.04 4.26 -52.39 -0.22 0.82 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16 46 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 47 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -34.17 363.67 -8.90 -43.07 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.86 Total: 9.29 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.99 Total: -0.37 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.15 Total: -49.82 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.36 Total: -23.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.17 -8.90 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.006 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds