Wall clock time and date at job start Tue Mar 31 2020 18:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46906 * 2 1 4 4 H 1.09002 * 109.47452 * 305.00229 * 3 2 1 5 5 C 1.50700 * 109.47391 * 185.00142 * 3 2 1 6 6 H 1.08004 * 119.99891 * 240.00402 * 5 3 2 7 7 C 1.37868 * 120.00045 * 59.99544 * 5 3 2 8 8 N 1.31516 * 120.00047 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00253 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46842 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46939 * 120.00069 * 9 7 5 12 12 H 1.48498 * 109.47268 * 240.00438 * 9 7 5 13 13 N 1.46499 * 109.47331 * 64.99828 * 3 2 1 14 14 C 1.34776 * 120.00330 * 275.00354 * 13 3 2 15 15 O 1.21287 * 119.99964 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00284 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.58910 * 336.43027 * 16 14 13 18 18 C 1.53199 * 109.58750 * 96.85588 * 16 14 13 19 19 C 1.53044 * 109.31369 * 174.41837 * 18 16 14 20 20 C 1.53036 * 109.54009 * 298.63892 * 19 18 16 21 21 C 1.53196 * 109.31560 * 61.36440 * 20 19 18 22 22 N 1.46925 * 108.77169 * 305.36368 * 21 20 19 23 23 C 1.34774 * 120.62886 * 233.57958 * 22 21 20 24 24 O 1.21702 * 119.99871 * 196.31012 * 23 22 21 25 25 C 1.46654 * 120.00182 * 16.32492 * 23 22 21 26 26 C 1.36540 * 125.99099 * 187.06693 * 25 23 22 27 27 C 1.40359 * 106.70717 * 179.97438 * 26 25 23 28 28 C 1.35127 * 107.12053 * 359.97438 * 27 26 25 29 29 O 1.33939 * 108.76268 * 359.77177 * 28 27 26 30 30 H 1.09010 * 109.47366 * 299.99966 * 1 2 3 31 31 H 1.08997 * 109.47547 * 60.00018 * 1 2 3 32 32 H 1.09007 * 109.47094 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47622 * 240.00382 * 2 1 3 34 34 H 1.09006 * 109.47284 * 119.99417 * 2 1 3 35 35 H 0.96997 * 120.00046 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99943 * 95.00207 * 13 3 2 37 37 H 1.08994 * 109.49763 * 294.37452 * 18 16 14 38 38 H 1.09004 * 109.49300 * 54.47637 * 18 16 14 39 39 H 1.09001 * 109.46034 * 178.61360 * 19 18 16 40 40 H 1.09009 * 109.44543 * 58.65225 * 19 18 16 41 41 H 1.08992 * 109.50110 * 301.41187 * 20 19 18 42 42 H 1.09002 * 109.49671 * 181.31485 * 20 19 18 43 43 H 1.08991 * 109.58759 * 185.57562 * 21 20 19 44 44 H 1.09004 * 109.58719 * 65.14637 * 21 20 19 45 45 H 1.08000 * 126.64380 * 359.97438 * 26 25 23 46 46 H 1.08007 * 126.44005 * 180.02562 * 27 26 25 47 47 H 1.07994 * 125.61894 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2279 8 7 3.4061 0.3375 -2.1732 9 14 6.0049 0.8803 -1.3812 10 1 6.5987 1.5445 -0.1931 11 1 6.4961 -0.5187 -1.4626 12 1 6.3998 1.6160 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3395 2.6326 0.4341 16 6 0.0361 3.3377 2.6548 17 1 0.6248 2.9314 3.4772 18 6 0.2783 4.8462 2.5421 19 6 -0.2568 5.5399 3.7970 20 6 -1.7639 5.2998 3.9113 21 6 -2.0293 3.7965 4.0395 22 7 -1.3922 3.1059 2.9100 23 6 -2.1043 2.2750 2.1232 24 8 -1.5310 1.4898 1.3912 25 6 -3.5700 2.3174 2.1489 26 6 -4.4091 1.4488 1.5119 27 6 -5.7176 1.8609 1.8088 28 6 -5.6212 2.9489 2.6044 29 8 -4.3255 3.2177 2.8114 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8292 -0.0609 -2.9498 36 1 2.2718 2.1233 1.9978 37 1 1.3474 5.0370 2.4488 38 1 -0.2389 5.2331 1.6641 39 1 -0.0635 6.6105 3.7305 40 1 0.2433 5.1346 4.6768 41 1 -2.2618 5.6824 3.0205 42 1 -2.1483 5.8136 4.7925 43 1 -3.1034 3.6123 4.0217 44 1 -1.6090 3.4298 4.9760 45 1 -4.1217 0.6076 0.8985 46 1 -6.6301 1.3953 1.4664 47 1 -6.4520 3.5070 3.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183813492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:09 Heat of formation + Delta-G solvation = -30.969151 kcal Electronic energy + Delta-G solvation = -30894.391609 eV Core-core repulsion = 26852.020863 eV Total energy + Delta-G solvation = -4042.370746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.65526 -41.85564 -39.45604 -38.44943 -36.75091 -34.35038 -34.18651 -33.72655 -33.10943 -31.99317 -30.63525 -28.99797 -26.89421 -25.09880 -24.64282 -24.19243 -22.70976 -22.08411 -21.62022 -21.10362 -20.42675 -19.26572 -18.43217 -17.94418 -17.58584 -17.27363 -17.00471 -16.71904 -16.21512 -16.02707 -15.73949 -15.27556 -15.07949 -14.79627 -14.63413 -14.49793 -14.15983 -14.00677 -13.90991 -13.57073 -13.51882 -13.31177 -13.11465 -12.95566 -12.81625 -12.68213 -12.48819 -12.15131 -12.08413 -11.86503 -11.71131 -11.56498 -11.32517 -10.99885 -10.96126 -10.78454 -10.51625 -10.23882 -9.84779 -9.48818 -9.21416 -8.14188 -6.32801 0.13732 1.43260 1.43631 1.46996 1.53719 1.56577 1.88204 2.16812 2.36726 2.43428 2.65409 3.14187 3.62943 3.83986 3.88543 3.94168 3.99915 4.11622 4.14805 4.17038 4.28012 4.50871 4.52923 4.59169 4.70027 4.77545 4.84494 4.88787 4.92859 4.93814 4.99325 5.08956 5.13284 5.16818 5.25165 5.32183 5.44176 5.46405 5.51488 5.57961 5.70028 5.72053 5.86072 5.96886 6.01986 6.19746 6.37727 6.77489 7.09137 7.35182 7.49488 7.77376 8.91327 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.003682 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.224114 B = 7602.265543 C = 8974.419051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.289 3.711 4 H -0.011 1.011 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.974 3.026 10 H -0.256 1.256 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.708 5.708 14 C 0.491 3.509 15 O -0.548 6.548 16 C 0.138 3.862 17 H 0.115 0.885 18 C -0.118 4.118 19 C -0.109 4.109 20 C -0.129 4.129 21 C 0.097 3.903 22 N -0.605 5.605 23 C 0.564 3.436 24 O -0.488 6.488 25 C -0.089 4.089 26 C -0.144 4.144 27 C -0.234 4.234 28 C 0.001 3.999 29 O -0.159 6.159 30 H 0.113 0.887 31 H 0.005 0.995 32 H 0.016 0.984 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.400 0.600 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.139 0.861 46 H 0.179 0.821 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.667 10.854 19.400 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.185 3.815 4 H 0.006 0.994 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.190 4.190 8 N -0.558 5.558 9 Si 0.799 3.201 10 H -0.180 1.180 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.358 5.358 14 C 0.277 3.723 15 O -0.426 6.426 16 C 0.032 3.968 17 H 0.133 0.867 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.167 4.167 21 C -0.023 4.023 22 N -0.340 5.340 23 C 0.354 3.646 24 O -0.366 6.366 25 C -0.140 4.140 26 C -0.165 4.165 27 C -0.253 4.253 28 C -0.067 4.067 29 O -0.055 6.055 30 H 0.130 0.870 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.234 0.766 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.110 0.890 45 H 0.157 0.843 46 H 0.196 0.804 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -15.751 10.552 18.335 26.375 hybrid contribution 1.022 -0.744 -1.065 1.652 sum -14.729 9.808 17.271 24.727 Atomic orbital electron populations 1.22286 0.96394 0.97823 1.03514 1.21751 0.94111 0.99483 1.00143 1.18179 0.93376 0.88631 0.81306 0.99355 1.21651 0.91354 1.38658 1.06636 0.90706 1.25873 1.03652 0.94403 0.95033 1.70115 1.37113 1.38580 1.09947 0.85268 0.78745 0.77774 0.78345 1.17970 1.20612 1.20978 1.46070 1.15477 1.56816 1.17439 1.20681 0.81785 0.79440 0.90360 1.90726 1.50491 1.58718 1.42685 1.21164 0.82659 0.97674 0.95315 0.86693 1.21838 1.02766 0.90722 1.00320 1.21529 0.95580 1.01275 0.96297 1.21912 0.96691 0.94688 1.03384 1.22367 0.99553 0.92935 0.87440 1.47662 1.08807 1.46013 1.31549 1.17507 0.84030 0.82575 0.80446 1.90769 1.67936 1.37583 1.40313 1.21963 0.91456 0.95828 1.04785 1.22134 0.93783 1.00266 1.00339 1.22131 0.97719 1.00520 1.04902 1.25437 0.84261 0.97961 0.99049 1.84180 1.17981 1.46634 1.56692 0.87002 0.97571 0.96461 0.92054 0.94910 0.92801 0.76551 0.89258 0.93589 0.89607 0.89337 0.93092 0.87325 0.87734 0.89010 0.84321 0.80389 0.72524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.81 8.02 71.98 0.58 -7.23 16 2 C -0.12 -6.47 5.45 30.59 0.17 -6.30 16 3 C 0.29 16.07 2.24 44.25 0.10 16.17 16 4 H -0.01 -0.76 7.58 -2.39 -0.02 -0.78 16 5 C -0.54 -30.31 8.73 25.60 0.22 -30.08 16 6 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 7 C 0.01 0.56 5.29 84.65 0.45 1.00 16 8 N -0.92 -55.93 11.29 21.44 0.24 -55.69 16 9 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.71 -31.51 5.02 -446.10 -2.24 -33.75 16 14 C 0.49 20.96 4.66 87.66 0.41 21.36 16 15 O -0.55 -28.69 10.83 21.80 0.24 -28.45 16 16 C 0.14 4.07 3.27 44.23 0.14 4.21 16 17 H 0.12 2.72 8.10 -2.39 -0.02 2.70 16 18 C -0.12 -2.81 5.35 30.68 0.16 -2.64 16 19 C -0.11 -1.59 5.88 30.62 0.18 -1.41 16 20 C -0.13 -1.83 6.08 30.67 0.19 -1.64 16 21 C 0.10 1.75 6.22 86.36 0.54 2.28 16 22 N -0.60 -17.26 2.97 -803.86 -2.39 -19.65 16 23 C 0.56 20.43 6.80 86.44 0.59 21.01 16 24 O -0.49 -22.28 8.58 20.50 0.18 -22.11 16 25 C -0.09 -2.66 6.76 24.07 0.16 -2.50 16 26 C -0.14 -4.13 10.63 22.39 0.24 -3.89 16 27 C -0.23 -4.41 10.87 22.07 0.24 -4.17 16 28 C 0.00 0.02 12.08 67.10 0.81 0.83 16 29 O -0.16 -3.38 7.42 -5.12 -0.04 -3.42 16 30 H 0.11 5.92 2.61 -75.05 -0.20 5.72 16 31 H 0.01 0.31 7.85 -2.39 -0.02 0.29 16 32 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 3.79 5.95 -2.39 -0.01 3.77 16 34 H 0.03 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.40 14.92 8.51 -92.71 -0.79 14.13 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.11 1.85 4.26 -9.63 -0.04 1.81 16 44 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 46 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 47 H 0.26 0.68 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -83.26 363.67 3.18 -80.09 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.01 Total: 30.20 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.18 Total: 7.02 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -4.39 Total: -109.09 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: 0.37 Total: -53.98 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -83.26 3.18 -80.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.117 kcal (2) G-P(sol) polarization free energy of solvation -83.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds