Wall clock time and date at job start Tue Mar 31 2020 17:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.46893 * 180.02562 * 17 16 14 19 19 C 1.34783 * 119.99631 * 180.02562 * 18 17 16 20 20 O 1.21594 * 119.99924 * 0.02562 * 19 18 17 21 21 C 1.47526 * 119.99846 * 180.02562 * 19 18 17 22 22 C 1.39712 * 120.19643 * 359.72086 * 21 19 18 23 23 C 1.37784 * 119.91149 * 179.71990 * 22 21 19 24 24 C 1.38549 * 120.30079 * 0.58278 * 23 22 21 25 25 C 1.50699 * 119.80824 * 179.71308 * 24 23 22 26 26 C 1.38063 * 120.38936 * 359.69467 * 24 23 22 27 27 C 1.38705 * 120.08357 * 359.97438 * 26 24 23 28 28 O 1.35653 * 120.15385 * 180.02562 * 27 26 24 29 29 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 30 30 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 31 31 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 33 33 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 34 34 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 35 35 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 36 36 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 37 37 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 38 38 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 39 39 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 40 40 H 0.96993 * 120.00589 * 0.02562 * 18 17 16 41 41 H 1.08002 * 120.03849 * 0.02562 * 22 21 19 42 42 H 1.07995 * 119.85236 * 180.27252 * 23 22 21 43 43 H 1.08996 * 109.47129 * 269.97600 * 25 24 23 44 44 H 1.08994 * 109.46667 * 29.97879 * 25 24 23 45 45 H 1.09002 * 109.46830 * 149.97676 * 25 24 23 46 46 H 1.07995 * 119.95863 * 180.02562 * 26 24 23 47 47 H 0.96706 * 113.99764 * 269.98458 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 7 -1.7353 4.5373 3.8176 19 6 -2.9515 5.1039 3.9457 20 8 -3.7368 5.0744 3.0177 21 6 -3.3300 5.7599 5.2117 22 6 -2.4331 5.7911 6.2825 23 6 -2.7905 6.4104 7.4602 24 6 -4.0408 6.9926 7.5925 25 6 -4.4225 7.6614 8.8879 26 6 -4.9389 6.9640 6.5443 27 6 -4.5934 6.3509 5.3491 28 8 -5.4745 6.3224 4.3181 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9548 0.8552 -0.5318 35 1 2.2902 2.1166 1.9978 36 1 0.0991 2.6017 3.4901 37 1 0.7539 4.1436 2.8885 38 1 -1.3974 4.6138 1.7493 39 1 -2.0528 3.0720 2.3506 40 1 -1.1091 4.5605 4.5579 41 1 -1.4591 5.3347 6.1854 42 1 -2.0949 6.4378 8.2858 43 1 -4.8925 6.9327 9.5483 44 1 -3.5292 8.0625 9.3666 45 1 -5.1218 8.4727 8.6856 46 1 -5.9115 7.4204 6.6549 47 1 -6.0547 5.5487 4.3178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183862607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:58 Heat of formation + Delta-G solvation = -104.778288 kcal Electronic energy + Delta-G solvation = -27833.538800 eV Core-core repulsion = 23787.967450 eV Total energy + Delta-G solvation = -4045.571351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77418 -39.45051 -38.77248 -37.25560 -35.63086 -34.90090 -33.28144 -32.48658 -31.69848 -30.48918 -30.33933 -27.97263 -27.15587 -24.20644 -23.18016 -22.49496 -22.21352 -20.81838 -20.42316 -19.55329 -18.55274 -17.94360 -17.62739 -16.82309 -16.20621 -16.01949 -15.67883 -15.41308 -15.21203 -14.88224 -14.82723 -14.44015 -14.04844 -13.92470 -13.54584 -13.44715 -13.21022 -13.02687 -12.55040 -12.54427 -12.46775 -12.31899 -12.13807 -11.96643 -11.81332 -11.76734 -11.33571 -11.06075 -10.90858 -10.70403 -10.45001 -9.98062 -9.90221 -9.60588 -9.37958 -9.24334 -9.21880 -9.04766 -8.97221 -8.36313 -8.12047 -6.60172 -4.24582 0.38118 0.80355 2.58142 2.88413 3.18003 3.36074 3.37971 3.44457 3.58819 3.81645 4.01077 4.23900 4.29970 4.40269 4.47279 4.70873 4.79802 4.83644 4.98119 5.06802 5.07065 5.14728 5.17898 5.25285 5.42617 5.50155 5.54308 5.72160 5.80976 5.87904 5.99254 6.01607 6.06397 6.08844 6.24795 6.26905 6.29184 6.67447 6.78460 6.94101 7.03282 7.29960 7.34171 7.38104 7.38929 7.62759 8.07361 8.20483 8.42812 8.67558 8.93993 9.44582 10.80420 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.001941 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.170518 B =14421.136315 C =15015.038809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.042 0.958 5 C -0.617 4.617 6 H 0.061 0.939 7 C 0.039 3.961 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.701 5.701 14 C 0.505 3.495 15 O -0.546 6.546 16 C -0.156 4.156 17 C 0.137 3.863 18 N -0.729 5.729 19 C 0.555 3.445 20 O -0.518 6.518 21 C -0.171 4.171 22 C -0.067 4.067 23 C -0.140 4.140 24 C -0.046 4.046 25 C -0.120 4.120 26 C -0.159 4.159 27 C 0.174 3.826 28 O -0.478 6.478 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.393 0.607 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.396 0.604 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.135 0.865 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.532 10.593 22.798 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.060 0.940 5 C -0.655 4.655 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.531 5.531 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.348 5.348 14 C 0.289 3.711 15 O -0.425 6.425 16 C -0.197 4.197 17 C 0.014 3.986 18 N -0.382 5.382 19 C 0.342 3.658 20 O -0.394 6.394 21 C -0.174 4.174 22 C -0.086 4.086 23 C -0.158 4.158 24 C -0.046 4.046 25 C -0.176 4.176 26 C -0.178 4.178 27 C 0.127 3.873 28 O -0.289 6.289 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.153 0.847 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -18.297 10.520 19.664 28.847 hybrid contribution 0.597 0.118 2.559 2.631 sum -17.700 10.637 22.224 30.337 Atomic orbital electron populations 1.21885 0.97338 0.98880 1.01979 1.22360 0.93813 0.99778 1.01832 1.19059 0.95786 0.88578 0.82297 0.94032 1.22086 0.89711 1.49575 1.04117 0.92103 1.25684 0.97540 0.92340 1.01220 1.70879 1.07068 1.40883 1.34279 0.84116 0.75486 0.77781 0.75857 1.20929 1.19477 1.20578 1.46242 1.14503 1.55945 1.18145 1.20107 0.82828 0.79405 0.88793 1.90705 1.50789 1.59792 1.41256 1.21841 0.97641 1.01847 0.98339 1.21060 0.94400 0.97944 0.85196 1.45946 1.16434 1.58568 1.17250 1.18020 0.81912 0.78637 0.87224 1.90841 1.50361 1.57934 1.40262 1.20437 0.96794 1.04791 0.95407 1.21236 0.98464 0.96779 0.92076 1.20992 0.96609 1.00098 0.98072 1.20005 0.93338 0.95668 0.95603 1.20887 1.02531 1.00331 0.93871 1.21338 1.01077 1.03398 0.91973 1.18480 0.88690 0.93610 0.86518 1.84753 1.50008 1.48318 1.45786 0.93346 0.92960 0.95092 0.91296 0.93135 0.92143 0.77466 0.88810 0.88701 0.90317 0.90374 0.76878 0.85131 0.85080 0.90535 0.90958 0.91091 0.84729 0.74525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.15 0.32 -2.57 16 2 C -0.14 -3.06 5.28 -26.73 -0.14 -3.20 16 3 C 0.25 5.75 1.82 -69.08 -0.13 5.62 16 4 H 0.04 1.07 6.26 -51.93 -0.32 0.75 16 5 C -0.62 -16.38 9.01 -34.44 -0.31 -16.69 16 6 H 0.06 1.68 7.96 -52.48 -0.42 1.26 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.99 16 8 N -0.90 -26.51 13.69 55.43 0.76 -25.75 16 9 Si 1.04 25.05 26.27 -169.99 -4.47 20.58 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.05 5.67 56.52 0.32 -5.73 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.70 -13.33 5.03 -54.94 -0.28 -13.60 16 14 C 0.50 8.88 6.42 -10.99 -0.07 8.81 16 15 O -0.55 -11.63 13.12 5.56 0.07 -11.56 16 16 C -0.16 -1.85 5.81 -27.88 -0.16 -2.01 16 17 C 0.14 1.81 4.96 -4.04 -0.02 1.79 16 18 N -0.73 -7.74 5.51 -61.35 -0.34 -8.08 16 19 C 0.56 7.16 7.76 -12.47 -0.10 7.06 16 20 O -0.52 -8.75 15.16 -16.60 -0.25 -9.00 16 21 C -0.17 -1.75 5.89 -104.84 -0.62 -2.37 16 22 C -0.07 -0.48 9.54 -39.20 -0.37 -0.86 16 23 C -0.14 -0.86 9.67 -39.63 -0.38 -1.24 16 24 C -0.05 -0.29 5.88 -104.57 -0.62 -0.91 16 25 C -0.12 -0.45 10.00 36.01 0.36 -0.09 16 26 C -0.16 -1.22 9.62 -39.47 -0.38 -1.60 16 27 C 0.17 1.76 6.72 -38.69 -0.26 1.50 16 28 O -0.48 -5.26 11.58 -40.54 -0.47 -5.73 16 29 H 0.05 0.95 5.63 -51.92 -0.29 0.65 16 30 H 0.05 1.10 7.88 -51.93 -0.41 0.70 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.60 4.74 -51.92 -0.25 1.35 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 35 H 0.39 6.52 8.53 -40.82 -0.35 6.18 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.40 2.82 6.50 -40.82 -0.27 2.56 16 41 H 0.13 0.61 6.40 -52.49 -0.34 0.28 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 45 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.40 2.84 9.06 45.56 0.41 3.25 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -35.65 383.34 -8.27 -43.91 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.10 Total: 9.20 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.97 Total: -5.76 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.15 Total: -47.43 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.65 Total: -26.29 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.47 Total: 20.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.65 -8.27 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183862607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.865 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds