Wall clock time and date at job start Tue Mar 31 2020 17:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.46893 * 180.02562 * 17 16 14 19 19 C 1.34783 * 119.99631 * 180.02562 * 18 17 16 20 20 O 1.21594 * 119.99924 * 0.02562 * 19 18 17 21 21 C 1.47526 * 119.99846 * 180.02562 * 19 18 17 22 22 C 1.39712 * 120.19643 * 359.72086 * 21 19 18 23 23 C 1.37784 * 119.91149 * 179.71990 * 22 21 19 24 24 C 1.38549 * 120.30079 * 0.58278 * 23 22 21 25 25 C 1.50699 * 119.80824 * 179.71308 * 24 23 22 26 26 C 1.38063 * 120.38936 * 359.69467 * 24 23 22 27 27 C 1.38705 * 120.08357 * 359.97438 * 26 24 23 28 28 O 1.35653 * 120.15385 * 180.02562 * 27 26 24 29 29 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 30 30 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 31 31 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 33 33 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 34 34 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 35 35 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 36 36 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 37 37 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 38 38 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 39 39 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 40 40 H 0.96993 * 120.00589 * 0.02562 * 18 17 16 41 41 H 1.08002 * 120.03849 * 0.02562 * 22 21 19 42 42 H 1.07995 * 119.85236 * 180.27252 * 23 22 21 43 43 H 1.08996 * 109.47129 * 269.97600 * 25 24 23 44 44 H 1.08994 * 109.46667 * 29.97879 * 25 24 23 45 45 H 1.09002 * 109.46830 * 149.97676 * 25 24 23 46 46 H 1.07995 * 119.95863 * 180.02562 * 26 24 23 47 47 H 0.96706 * 113.99764 * 269.98458 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 7 -1.7353 4.5373 3.8176 19 6 -2.9515 5.1039 3.9457 20 8 -3.7368 5.0744 3.0177 21 6 -3.3300 5.7599 5.2117 22 6 -2.4331 5.7911 6.2825 23 6 -2.7905 6.4104 7.4602 24 6 -4.0408 6.9926 7.5925 25 6 -4.4225 7.6614 8.8879 26 6 -4.9389 6.9640 6.5443 27 6 -4.5934 6.3509 5.3491 28 8 -5.4745 6.3224 4.3181 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9548 0.8552 -0.5318 35 1 2.2902 2.1166 1.9978 36 1 0.0991 2.6017 3.4901 37 1 0.7539 4.1436 2.8885 38 1 -1.3974 4.6138 1.7493 39 1 -2.0528 3.0720 2.3506 40 1 -1.1091 4.5605 4.5579 41 1 -1.4591 5.3347 6.1854 42 1 -2.0949 6.4378 8.2858 43 1 -4.8925 6.9327 9.5483 44 1 -3.5292 8.0625 9.3666 45 1 -5.1218 8.4727 8.6856 46 1 -5.9115 7.4204 6.6549 47 1 -6.0547 5.5487 4.3178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183862607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:57 Heat of formation + Delta-G solvation = -131.872474 kcal Electronic energy + Delta-G solvation = -27834.713693 eV Core-core repulsion = 23787.967450 eV Total energy + Delta-G solvation = -4046.746243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55105 -40.84177 -39.69897 -37.92869 -37.22443 -36.12988 -34.46215 -33.93076 -33.25958 -31.57205 -30.93714 -29.19437 -28.33326 -25.34292 -24.15822 -23.74186 -23.15532 -22.10240 -21.57825 -21.15625 -19.81635 -19.23451 -18.52684 -18.00497 -17.27564 -17.17590 -16.95998 -16.36140 -16.20074 -15.93351 -15.72970 -15.55298 -15.08964 -14.93484 -14.76761 -14.48980 -14.41916 -14.39323 -14.16853 -13.84653 -13.54084 -13.41592 -13.02224 -12.91978 -12.72125 -12.64878 -12.49545 -12.43043 -12.38596 -12.26809 -11.79371 -11.77523 -11.39846 -11.11154 -10.95842 -10.68923 -10.48096 -10.26505 -9.88644 -9.78170 -9.58911 -8.78704 -6.43730 -0.25912 0.25907 1.44404 1.49106 1.67647 1.79123 1.79968 1.90906 2.40049 2.66329 2.70005 3.01175 3.21976 3.57362 3.72561 3.80828 3.97012 4.05811 4.07189 4.27445 4.32706 4.33825 4.41128 4.48213 4.57231 4.59776 4.69944 4.83126 4.86226 4.87349 4.91451 4.96022 5.10961 5.19943 5.22217 5.23273 5.28033 5.30239 5.31457 5.52024 5.55572 5.68661 5.69913 5.79834 6.02131 6.47787 6.54476 6.76606 6.87935 7.17671 7.29355 7.49081 8.60757 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.001941 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.170518 B =14421.136315 C =15015.038809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C 0.249 3.751 4 H 0.018 0.982 5 C -0.610 4.610 6 H 0.043 0.957 7 C -0.005 4.005 8 N -0.929 5.929 9 Si 1.068 2.932 10 H -0.284 1.284 11 H -0.245 1.245 12 H -0.277 1.277 13 N -0.701 5.701 14 C 0.501 3.499 15 O -0.586 6.586 16 C -0.136 4.136 17 C 0.146 3.854 18 N -0.710 5.710 19 C 0.551 3.449 20 O -0.571 6.571 21 C -0.197 4.197 22 C -0.061 4.061 23 C -0.138 4.138 24 C -0.040 4.040 25 C -0.119 4.119 26 C -0.167 4.167 27 C 0.150 3.850 28 O -0.501 6.501 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.259 0.741 35 H 0.406 0.594 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.417 0.583 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.145 0.855 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.940 10.990 26.126 33.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.144 3.856 4 H 0.036 0.964 5 C -0.648 4.648 6 H 0.062 0.938 7 C -0.206 4.206 8 N -0.564 5.564 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.170 1.170 12 H -0.203 1.203 13 N -0.350 5.350 14 C 0.288 3.712 15 O -0.467 6.467 16 C -0.176 4.176 17 C 0.021 3.979 18 N -0.364 5.364 19 C 0.339 3.661 20 O -0.451 6.451 21 C -0.201 4.201 22 C -0.079 4.079 23 C -0.156 4.156 24 C -0.041 4.041 25 C -0.176 4.176 26 C -0.185 4.185 27 C 0.104 3.896 28 O -0.314 6.314 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.241 0.759 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.256 0.744 41 H 0.176 0.824 42 H 0.181 0.819 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.163 0.837 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -18.682 10.921 23.073 31.633 hybrid contribution 0.706 0.081 1.666 1.811 sum -17.976 11.002 24.739 32.499 Atomic orbital electron populations 1.21768 0.95666 1.00258 1.01400 1.22244 0.95188 0.98429 1.01554 1.18730 0.93396 0.89694 0.83749 0.96379 1.22289 0.91527 1.47823 1.03135 0.93836 1.26714 0.97715 0.92308 1.03877 1.70973 1.08017 1.43371 1.34069 0.83744 0.75190 0.78493 0.73410 1.20926 1.16993 1.20298 1.46053 1.15637 1.56211 1.17117 1.20996 0.81554 0.78414 0.90273 1.90699 1.51750 1.60980 1.43263 1.21737 0.96839 1.03164 0.95844 1.20753 0.94949 0.96591 0.85570 1.45681 1.16294 1.57535 1.16931 1.18542 0.81765 0.78089 0.87662 1.90808 1.51961 1.60057 1.42239 1.20363 0.97893 1.06602 0.95191 1.21541 0.98854 0.96209 0.91317 1.21399 0.96928 0.98863 0.98411 1.20416 0.93080 0.94528 0.96053 1.20969 1.03445 1.00570 0.92587 1.21500 1.02117 1.03360 0.91571 1.18830 0.88819 0.94819 0.87164 1.84705 1.50618 1.49175 1.46905 0.92995 0.94525 0.92657 0.92597 0.92385 0.93192 0.75905 0.84899 0.85569 0.93325 0.92557 0.74445 0.82423 0.81930 0.89314 0.89497 0.90691 0.83680 0.73487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.53 71.98 0.61 -4.54 16 2 C -0.14 -5.78 5.28 30.59 0.16 -5.62 16 3 C 0.25 11.49 1.82 44.24 0.08 11.57 16 4 H 0.02 0.94 6.26 -2.39 -0.01 0.93 16 5 C -0.61 -32.42 9.01 25.60 0.23 -32.19 16 6 H 0.04 2.42 7.96 -2.91 -0.02 2.39 16 7 C -0.01 -0.29 5.32 84.66 0.45 0.16 16 8 N -0.93 -55.66 13.69 21.45 0.29 -55.36 16 9 Si 1.07 50.63 26.27 68.60 1.80 52.43 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.25 -10.63 5.67 99.48 0.56 -10.06 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 N -0.70 -25.58 5.03 -446.11 -2.24 -27.82 16 14 C 0.50 16.85 6.42 87.66 0.56 17.41 16 15 O -0.59 -24.83 13.12 -3.03 -0.04 -24.86 16 16 C -0.14 -2.81 5.81 29.85 0.17 -2.63 16 17 C 0.15 3.72 4.96 86.38 0.43 4.15 16 18 N -0.71 -13.95 5.51 -466.27 -2.57 -16.52 16 19 C 0.55 14.21 7.76 86.69 0.67 14.89 16 20 O -0.57 -20.27 15.16 16.91 0.26 -20.01 16 21 C -0.20 -3.89 5.89 -20.01 -0.12 -4.01 16 22 C -0.06 -0.70 9.54 22.52 0.21 -0.49 16 23 C -0.14 -1.18 9.67 22.24 0.22 -0.97 16 24 C -0.04 -0.40 5.88 -19.83 -0.12 -0.52 16 25 C -0.12 -0.47 10.00 71.24 0.71 0.24 16 26 C -0.17 -2.38 9.62 22.34 0.21 -2.16 16 27 C 0.15 3.05 6.72 22.85 0.15 3.20 16 28 O -0.50 -11.80 11.58 -68.76 -0.80 -12.59 16 29 H 0.05 1.94 5.63 -2.38 -0.01 1.93 16 30 H 0.04 1.51 7.88 -2.39 -0.02 1.49 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.52 4.74 -2.38 -0.01 2.51 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 35 H 0.41 12.59 8.53 -92.71 -0.79 11.80 16 36 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 39 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 40 H 0.42 4.50 6.50 -92.71 -0.60 3.90 16 41 H 0.16 0.80 6.40 -2.91 -0.02 0.78 16 42 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 43 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.09 0.13 8.08 -2.39 -0.02 0.11 16 45 H 0.07 0.27 8.08 -2.39 -0.02 0.25 16 46 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 47 H 0.41 6.62 9.06 -74.05 -0.67 5.95 16 Total: -1.00 -81.41 383.34 0.14 -81.27 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -1.22 Total: 24.97 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.65 Total: -1.50 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -4.52 Total: -99.70 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -0.58 Total: -57.47 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 1.80 Total: 52.43 kcal Total: -81.41 0.14 -81.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183862607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.601 kcal (2) G-P(sol) polarization free energy of solvation -81.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds