Wall clock time and date at job start Tue Mar 31 2020 17:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21286 * 119.99824 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47372 * 180.02562 * 16 14 13 18 18 C 1.38295 * 119.96967 * 269.72830 * 17 16 14 19 19 C 1.38241 * 120.10970 * 179.72407 * 18 17 16 20 20 C 1.38169 * 120.05405 * 0.54662 * 19 18 17 21 21 C 1.38707 * 119.94344 * 359.73021 * 20 19 18 22 22 O 1.35906 * 120.05116 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00611 * 0.02562 * 22 21 20 24 24 C 1.50694 * 109.47476 * 180.02562 * 23 22 21 25 25 O 1.21284 * 119.99727 * 359.97438 * 24 23 22 26 26 N 1.34777 * 120.00202 * 179.97438 * 24 23 22 27 27 C 1.46493 * 120.00150 * 179.97438 * 26 24 23 28 28 C 1.38116 * 119.97307 * 89.99844 * 17 16 14 29 29 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47210 * 299.99493 * 1 2 3 31 31 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 32 32 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 33 33 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 34 34 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 35 35 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 36 36 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 37 37 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 38 38 H 1.07995 * 119.94429 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.97454 * 180.25735 * 19 18 17 40 40 H 1.08000 * 120.02631 * 179.70629 * 20 19 18 41 41 H 1.08998 * 109.46825 * 300.00377 * 23 22 21 42 42 H 1.09001 * 109.46699 * 59.99559 * 23 22 21 43 43 H 0.96999 * 119.99913 * 0.02562 * 26 24 23 44 44 H 1.08998 * 109.47482 * 300.00387 * 27 26 24 45 45 H 1.09003 * 109.47094 * 60.00101 * 27 26 24 46 46 H 1.08996 * 109.47436 * 180.02562 * 27 26 24 47 47 H 1.08004 * 120.03113 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6304 0.4600 16 6 0.0606 3.3290 2.6792 17 6 -1.3384 3.8769 2.5624 18 6 -1.5392 5.1679 2.1091 19 6 -2.8216 5.6715 1.9955 20 6 -3.9056 4.8895 2.3454 21 6 -3.7066 3.5963 2.8057 22 8 -4.7712 2.8253 3.1510 23 6 -6.0676 3.4106 3.0143 24 6 -7.1157 2.4155 3.4412 25 8 -6.7849 1.3133 3.8244 26 7 -8.4205 2.7502 3.3973 27 6 -9.4393 1.7826 3.8118 28 6 -2.4187 3.0912 2.9134 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9548 0.8552 -0.5318 35 1 2.2902 2.1166 1.9978 36 1 0.0991 2.6017 3.4901 37 1 0.7539 4.1436 2.8885 38 1 -0.6929 5.7823 1.8397 39 1 -2.9760 6.6786 1.6373 40 1 -4.9070 5.2850 2.2609 41 1 -6.1332 4.2989 3.6425 42 1 -6.2327 3.6888 1.9734 43 1 -8.6850 3.6316 3.0905 44 1 -9.3740 0.8945 3.1833 45 1 -9.2738 1.5041 4.8526 46 1 -10.4281 2.2291 3.7076 47 1 -2.2612 2.0843 3.2711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183945763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:52 Heat of formation + Delta-G solvation = -88.840081 kcal Electronic energy + Delta-G solvation = -28159.588493 eV Core-core repulsion = 24114.708275 eV Total energy + Delta-G solvation = -4044.880218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66040 -39.78617 -39.04942 -37.43184 -35.20525 -35.06476 -32.68949 -32.32030 -31.31843 -30.90952 -29.18247 -27.97315 -26.70960 -26.16631 -22.70056 -22.37661 -21.93999 -21.01720 -20.29668 -19.46221 -18.33988 -17.84714 -17.56399 -16.74657 -16.43662 -16.20371 -15.96535 -15.73678 -15.31719 -15.09312 -14.90454 -14.17694 -14.03601 -13.73320 -13.43693 -13.32403 -13.15207 -12.91669 -12.78204 -12.58672 -12.54104 -12.39184 -12.27513 -11.90686 -11.59485 -11.35166 -11.22964 -10.98831 -10.84365 -10.63771 -10.40183 -10.28006 -9.85952 -9.67386 -9.54335 -9.23185 -9.01353 -8.75512 -8.31862 -8.24163 -8.02743 -6.55829 -4.19740 1.27962 1.44327 2.12947 2.20243 3.29970 3.34192 3.41247 3.46322 3.60761 3.66297 4.16207 4.21463 4.43822 4.51143 4.61714 4.68332 4.72476 4.79149 4.98044 5.02902 5.17528 5.19315 5.31243 5.32193 5.44402 5.52713 5.62353 5.69737 5.81647 6.01034 6.13321 6.16102 6.21193 6.34041 6.37671 6.58443 6.67229 6.74985 6.85576 6.88593 7.01152 7.11125 7.26458 7.41233 7.46543 7.69403 7.71139 8.25331 8.52677 8.73708 9.04527 9.49237 10.84658 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.002306 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.693122 B =12138.355456 C =12920.554219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.041 0.959 5 C -0.615 4.615 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.899 5.899 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.703 5.703 14 C 0.503 3.497 15 O -0.541 6.541 16 C -0.110 4.110 17 C -0.013 4.013 18 C -0.139 4.139 19 C -0.080 4.080 20 C -0.215 4.215 21 C 0.125 3.875 22 O -0.291 6.291 23 C 0.043 3.957 24 C 0.513 3.487 25 O -0.511 6.511 26 N -0.735 5.735 27 C 0.089 3.911 28 C -0.131 4.131 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.392 0.608 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.403 0.597 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.861 10.530 11.453 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.144 3.856 4 H 0.058 0.942 5 C -0.653 4.653 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.532 5.532 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.351 5.351 14 C 0.288 3.712 15 O -0.420 6.420 16 C -0.150 4.150 17 C -0.014 4.014 18 C -0.157 4.157 19 C -0.098 4.098 20 C -0.234 4.234 21 C 0.081 3.919 22 O -0.204 6.204 23 C -0.036 4.036 24 C 0.298 3.702 25 O -0.384 6.384 26 N -0.389 5.389 27 C -0.055 4.055 28 C -0.149 4.149 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.237 0.763 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.073 8.928 9.556 29.169 hybrid contribution 0.026 1.221 1.754 2.137 sum -26.047 10.149 11.309 30.156 Atomic orbital electron populations 1.21874 0.97300 0.98848 1.01991 1.22360 0.93831 0.99824 1.01764 1.19027 0.95672 0.88536 0.82357 0.94158 1.22100 0.89780 1.49392 1.04058 0.92094 1.25674 0.97545 0.92390 1.01213 1.70875 1.07074 1.41008 1.34288 0.84114 0.75494 0.77719 0.75866 1.20987 1.19481 1.20660 1.46243 1.14598 1.56214 1.18086 1.20226 0.82677 0.79413 0.88912 1.90691 1.50703 1.59460 1.41099 1.20780 0.94268 1.01811 0.98113 1.19105 0.93465 0.93250 0.95540 1.20933 0.97276 0.95650 1.01866 1.20828 0.92012 0.99268 0.97672 1.21106 0.99819 0.94356 1.08111 1.18877 0.86972 0.89905 0.96177 1.86147 1.11960 1.40118 1.82151 1.22376 0.82599 0.95714 1.02936 1.20170 0.83194 0.88408 0.78444 1.90786 1.81007 1.22190 1.44439 1.45607 1.05728 1.18596 1.68980 1.21569 0.89988 0.93061 1.00873 1.20212 0.88922 1.00745 1.05059 0.95153 0.93213 0.93111 0.91398 0.93128 0.92154 0.77498 0.88215 0.88050 0.85886 0.85822 0.85895 0.89002 0.88895 0.76306 0.91936 0.91976 0.90308 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.53 37.15 0.32 -2.70 16 2 C -0.14 -3.18 5.28 -26.73 -0.14 -3.32 16 3 C 0.25 5.94 1.82 -69.08 -0.13 5.81 16 4 H 0.04 1.06 6.26 -51.93 -0.32 0.74 16 5 C -0.62 -16.65 9.01 -34.44 -0.31 -16.96 16 6 H 0.06 1.71 7.96 -52.48 -0.42 1.30 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.99 16 8 N -0.90 -26.88 13.69 55.43 0.76 -26.13 16 9 Si 1.04 25.43 26.27 -169.99 -4.47 20.96 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.18 5.67 56.52 0.32 -5.86 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.70 -13.98 5.03 -54.93 -0.28 -14.26 16 14 C 0.50 9.35 6.42 -10.99 -0.07 9.28 16 15 O -0.54 -11.95 13.17 5.55 0.07 -11.88 16 16 C -0.11 -1.48 5.83 -29.04 -0.17 -1.65 16 17 C -0.01 -0.18 4.37 -104.65 -0.46 -0.64 16 18 C -0.14 -1.79 9.70 -39.56 -0.38 -2.17 16 19 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 20 C -0.22 -2.35 9.04 -39.43 -0.36 -2.70 16 21 C 0.13 1.67 6.69 -39.22 -0.26 1.41 16 22 O -0.29 -3.89 9.67 -39.36 -0.38 -4.27 16 23 C 0.04 0.36 5.22 36.00 0.19 0.55 16 24 C 0.51 5.05 7.91 -10.99 -0.09 4.96 16 25 O -0.51 -7.72 16.50 -14.36 -0.24 -7.96 16 26 N -0.73 -4.07 5.71 -67.08 -0.38 -4.45 16 27 C 0.09 0.43 10.70 59.84 0.64 1.08 16 28 C -0.13 -1.90 9.64 -39.44 -0.38 -2.28 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.04 5.63 -51.93 -0.29 0.74 16 31 H 0.05 1.12 7.88 -51.93 -0.41 0.71 16 32 H 0.07 1.62 4.74 -51.92 -0.25 1.38 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 35 H 0.39 6.88 8.53 -40.82 -0.35 6.54 16 36 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.92 6.30 -52.49 -0.33 0.58 16 41 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 42 H 0.09 0.58 7.66 -51.93 -0.40 0.18 16 43 H 0.40 0.74 8.83 -40.82 -0.36 0.38 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 47 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -37.17 386.65 -8.15 -45.33 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.98 Total: 6.48 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.09 Total: -9.65 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.10 Total: -44.84 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.54 Total: -24.11 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -4.47 Total: 20.96 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.17 -8.15 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183945763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.515 kcal (2) G-P(sol) polarization free energy of solvation -37.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds