Wall clock time and date at job start Tue Mar 31 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21286 * 119.99824 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47372 * 180.02562 * 16 14 13 18 18 C 1.38295 * 119.96967 * 269.72830 * 17 16 14 19 19 C 1.38241 * 120.10970 * 179.72407 * 18 17 16 20 20 C 1.38169 * 120.05405 * 0.54662 * 19 18 17 21 21 C 1.38707 * 119.94344 * 359.73021 * 20 19 18 22 22 O 1.35906 * 120.05116 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00611 * 0.02562 * 22 21 20 24 24 C 1.50694 * 109.47476 * 180.02562 * 23 22 21 25 25 O 1.21284 * 119.99727 * 359.97438 * 24 23 22 26 26 N 1.34777 * 120.00202 * 179.97438 * 24 23 22 27 27 C 1.46493 * 120.00150 * 179.97438 * 26 24 23 28 28 C 1.38116 * 119.97307 * 89.99844 * 17 16 14 29 29 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47210 * 299.99493 * 1 2 3 31 31 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 32 32 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 33 33 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 34 34 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 35 35 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 36 36 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 37 37 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 38 38 H 1.07995 * 119.94429 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.97454 * 180.25735 * 19 18 17 40 40 H 1.08000 * 120.02631 * 179.70629 * 20 19 18 41 41 H 1.08998 * 109.46825 * 300.00377 * 23 22 21 42 42 H 1.09001 * 109.46699 * 59.99559 * 23 22 21 43 43 H 0.96999 * 119.99913 * 0.02562 * 26 24 23 44 44 H 1.08998 * 109.47482 * 300.00387 * 27 26 24 45 45 H 1.09003 * 109.47094 * 60.00101 * 27 26 24 46 46 H 1.08996 * 109.47436 * 180.02562 * 27 26 24 47 47 H 1.08004 * 120.03113 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6304 0.4600 16 6 0.0606 3.3290 2.6792 17 6 -1.3384 3.8769 2.5624 18 6 -1.5392 5.1679 2.1091 19 6 -2.8216 5.6715 1.9955 20 6 -3.9056 4.8895 2.3454 21 6 -3.7066 3.5963 2.8057 22 8 -4.7712 2.8253 3.1510 23 6 -6.0676 3.4106 3.0143 24 6 -7.1157 2.4155 3.4412 25 8 -6.7849 1.3133 3.8244 26 7 -8.4205 2.7502 3.3973 27 6 -9.4393 1.7826 3.8118 28 6 -2.4187 3.0912 2.9134 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9548 0.8552 -0.5318 35 1 2.2902 2.1166 1.9978 36 1 0.0991 2.6017 3.4901 37 1 0.7539 4.1436 2.8885 38 1 -0.6929 5.7823 1.8397 39 1 -2.9760 6.6786 1.6373 40 1 -4.9070 5.2850 2.2609 41 1 -6.1332 4.2989 3.6425 42 1 -6.2327 3.6888 1.9734 43 1 -8.6850 3.6316 3.0905 44 1 -9.3740 0.8945 3.1833 45 1 -9.2738 1.5041 4.8526 46 1 -10.4281 2.2291 3.7076 47 1 -2.2612 2.0843 3.2711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183945763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:51 Heat of formation + Delta-G solvation = -116.257547 kcal Electronic energy + Delta-G solvation = -28160.777404 eV Core-core repulsion = 24114.708275 eV Total energy + Delta-G solvation = -4046.069129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52216 -40.89233 -40.22286 -38.41052 -36.97176 -35.73248 -34.44316 -33.80419 -32.85555 -31.75136 -29.92269 -29.49947 -28.14402 -26.76414 -24.33420 -23.56982 -23.07698 -22.06949 -21.47803 -21.12492 -19.81506 -19.05752 -18.43314 -17.78543 -17.43410 -17.30260 -17.12303 -16.81073 -16.54156 -16.16125 -15.80531 -15.56222 -15.14670 -14.96201 -14.73895 -14.53097 -14.43886 -14.19153 -14.14030 -14.01638 -13.64858 -13.56704 -13.26639 -13.12230 -12.82261 -12.66206 -12.48322 -12.44250 -12.30062 -12.01835 -11.86730 -11.78600 -11.40283 -11.10137 -11.07795 -10.70648 -10.48143 -10.25369 -9.76397 -9.75422 -9.15353 -8.78589 -6.43495 0.35147 0.51392 1.42162 1.44822 1.48719 1.56499 1.68427 1.85209 2.40518 2.48717 2.69029 2.94836 3.01148 3.60024 3.72017 3.90011 4.03270 4.09575 4.13270 4.16820 4.27797 4.31461 4.39661 4.41896 4.44684 4.51776 4.56053 4.58716 4.64386 4.80408 4.86612 4.93119 5.08637 5.09047 5.21328 5.29868 5.30582 5.31717 5.48230 5.54447 5.65811 5.69609 5.71264 5.80173 6.02072 6.33379 6.49919 6.54678 6.91766 7.12651 7.29880 7.52680 8.60463 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.002306 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.693122 B =12138.355456 C =12920.554219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C 0.253 3.747 4 H 0.021 0.979 5 C -0.610 4.610 6 H 0.041 0.959 7 C -0.006 4.006 8 N -0.929 5.929 9 Si 1.071 2.929 10 H -0.283 1.283 11 H -0.248 1.248 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.503 3.497 15 O -0.576 6.576 16 C -0.099 4.099 17 C -0.031 4.031 18 C -0.155 4.155 19 C -0.079 4.079 20 C -0.207 4.207 21 C 0.114 3.886 22 O -0.324 6.324 23 C 0.036 3.964 24 C 0.507 3.493 25 O -0.577 6.577 26 N -0.713 5.713 27 C 0.083 3.917 28 C -0.159 4.159 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.258 0.742 35 H 0.403 0.597 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.425 0.575 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.119 0.881 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.824 12.685 11.600 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.038 0.962 5 C -0.648 4.648 6 H 0.060 0.940 7 C -0.207 4.207 8 N -0.564 5.564 9 Si 0.894 3.106 10 H -0.208 1.208 11 H -0.172 1.172 12 H -0.200 1.200 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.456 6.456 16 C -0.138 4.138 17 C -0.031 4.031 18 C -0.173 4.173 19 C -0.096 4.096 20 C -0.225 4.225 21 C 0.069 3.931 22 O -0.237 6.237 23 C -0.041 4.041 24 C 0.293 3.707 25 O -0.456 6.456 26 N -0.367 5.367 27 C -0.060 4.060 28 C -0.178 4.178 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.238 0.762 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.263 0.737 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.137 0.863 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -29.087 11.143 9.733 32.633 hybrid contribution 0.827 0.637 1.781 2.065 sum -28.259 11.780 11.514 32.710 Atomic orbital electron populations 1.21745 0.95764 1.00056 1.01337 1.22257 0.95076 0.98707 1.01412 1.18692 0.93344 0.89462 0.83734 0.96164 1.22289 0.91527 1.47856 1.03119 0.94050 1.26771 0.97737 0.92222 1.03959 1.70973 1.08018 1.43382 1.34028 0.83719 0.75091 0.78573 0.73263 1.20838 1.17235 1.19951 1.46102 1.15753 1.56556 1.17114 1.21015 0.81382 0.78373 0.90215 1.90668 1.51486 1.60564 1.42870 1.20753 0.94921 1.02693 0.95429 1.19175 0.93231 0.94005 0.96703 1.21208 0.98707 0.95396 1.01984 1.21258 0.91267 1.00637 0.96466 1.21522 1.01793 0.93028 1.06172 1.19029 0.86623 0.90922 0.96485 1.86103 1.13620 1.41612 1.82388 1.22736 0.80090 0.96013 1.05289 1.20616 0.84668 0.87788 0.77606 1.90759 1.82175 1.24870 1.47825 1.45509 1.04459 1.19622 1.67137 1.21715 0.91558 0.92992 0.99758 1.20308 0.90304 1.00562 1.06637 0.92955 0.93310 0.94319 0.92457 0.92760 0.93271 0.76200 0.86211 0.85390 0.85034 0.82607 0.81943 0.85376 0.86194 0.73749 0.93492 0.93182 0.86268 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.53 71.98 0.61 -4.82 16 2 C -0.14 -6.11 5.28 30.59 0.16 -5.95 16 3 C 0.25 12.09 1.82 44.24 0.08 12.17 16 4 H 0.02 1.07 6.26 -2.39 -0.01 1.06 16 5 C -0.61 -33.37 9.01 25.60 0.23 -33.14 16 6 H 0.04 2.38 7.96 -2.91 -0.02 2.35 16 7 C -0.01 -0.36 5.32 84.66 0.45 0.10 16 8 N -0.93 -56.57 13.69 21.45 0.29 -56.27 16 9 Si 1.07 51.28 26.27 68.60 1.80 53.09 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.25 -10.95 5.67 99.48 0.56 -10.38 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.71 -27.77 5.03 -446.10 -2.24 -30.01 16 14 C 0.50 18.34 6.42 87.66 0.56 18.91 16 15 O -0.58 -25.24 13.17 -3.05 -0.04 -25.28 16 16 C -0.10 -2.54 5.83 29.10 0.17 -2.37 16 17 C -0.03 -0.83 4.37 -19.88 -0.09 -0.92 16 18 C -0.15 -3.67 9.70 22.28 0.22 -3.45 16 19 C -0.08 -1.49 10.04 22.25 0.22 -1.26 16 20 C -0.21 -3.81 9.04 22.37 0.20 -3.61 16 21 C 0.11 2.89 6.69 22.51 0.15 3.04 16 22 O -0.32 -8.41 9.67 -73.45 -0.71 -9.12 16 23 C 0.04 0.52 5.22 71.23 0.37 0.89 16 24 C 0.51 9.44 7.91 87.66 0.69 10.13 16 25 O -0.58 -17.99 16.50 15.99 0.26 -17.73 16 26 N -0.71 -6.30 5.71 -484.54 -2.77 -9.06 16 27 C 0.08 0.69 10.70 127.77 1.37 2.06 16 28 C -0.16 -4.61 9.64 22.36 0.22 -4.40 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 2.00 5.63 -2.39 -0.01 1.99 16 31 H 0.04 1.67 7.88 -2.39 -0.02 1.65 16 32 H 0.06 2.69 4.74 -2.38 -0.01 2.67 16 33 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.26 15.71 8.73 -92.71 -0.81 14.90 16 35 H 0.40 13.94 8.53 -92.71 -0.79 13.15 16 36 H 0.12 2.58 8.08 -2.39 -0.02 2.56 16 37 H 0.13 2.59 8.08 -2.39 -0.02 2.57 16 38 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.16 1.56 6.30 -2.91 -0.02 1.54 16 41 H 0.13 0.85 7.66 -2.39 -0.02 0.83 16 42 H 0.12 1.03 7.66 -2.39 -0.02 1.01 16 43 H 0.42 0.01 8.83 -92.71 -0.82 -0.81 16 44 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -84.69 386.65 1.44 -83.26 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.78 Total: 23.75 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 5.62 Total: -12.63 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -4.72 Total: -95.35 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.49 Total: -52.12 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.80 Total: 53.09 kcal Total: -84.69 1.44 -83.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183945763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.001 kcal (2) G-P(sol) polarization free energy of solvation -84.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds