Wall clock time and date at job start Tue Mar 31 2020 17:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46776 * 35.00022 * 9 8 6 11 11 C 1.52998 * 109.47246 * 155.00083 * 9 8 6 12 12 N 1.46497 * 109.47174 * 305.00324 * 11 9 8 13 13 C 1.34783 * 119.99701 * 180.02562 * 12 11 9 14 14 O 1.21684 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.46379 * 119.99365 * 180.02562 * 13 12 11 16 16 H 1.07996 * 120.00446 * 359.97438 * 15 13 12 17 17 C 1.40055 * 119.99293 * 179.97438 * 15 13 12 18 18 N 1.30671 * 120.00027 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99641 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47395 * 59.99461 * 19 17 15 21 21 H 1.48497 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47081 * 299.99759 * 19 17 15 23 23 C 1.50696 * 109.47365 * 275.00798 * 9 8 6 24 24 C 1.38236 * 119.99802 * 319.72135 * 23 9 8 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 9 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47146 * 65.00205 * 11 9 8 40 40 H 1.09006 * 109.46999 * 185.00304 * 11 9 8 41 41 H 0.96998 * 120.00251 * 0.02562 * 12 11 9 42 42 H 0.97001 * 119.99593 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00085 * 359.97438 * 24 23 9 44 44 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 45 45 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 46 46 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 1.6266 -4.5494 1.6070 11 6 2.7030 -4.7855 3.4581 12 7 4.0381 -4.6191 2.8784 13 6 5.1087 -5.1714 3.4827 14 8 4.9664 -5.8079 4.5101 15 6 6.4428 -5.0047 2.9038 16 1 6.5691 -4.4394 1.9922 17 6 7.5554 -5.5782 3.5320 18 7 7.4025 -6.2616 4.6352 19 14 9.2579 -5.3648 2.7937 20 1 9.5901 -3.9191 2.7251 21 1 10.2566 -6.0630 3.6423 22 1 9.2804 -5.9432 1.4261 23 6 0.3204 -4.1331 3.2423 24 6 0.0094 -3.2638 4.2712 25 6 -1.2339 -3.3217 4.8730 26 6 -2.1627 -4.2548 4.4519 27 6 -1.8498 -5.1274 3.4266 28 6 -0.6084 -5.0667 2.8218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 2.6870 -4.3602 4.4616 40 1 2.4587 -5.8466 3.5091 41 1 4.1515 -4.1114 2.0597 42 1 8.1732 -6.6585 5.0705 43 1 0.7366 -2.5375 4.6030 44 1 -1.4783 -2.6396 5.6738 45 1 -3.1330 -4.3017 4.9238 46 1 -2.5758 -5.8562 3.0973 47 1 -0.3637 -5.7487 2.0210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187315335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:15 Heat of formation + Delta-G solvation = -100.622735 kcal Electronic energy + Delta-G solvation = -29264.266946 eV Core-core repulsion = 25218.875794 eV Total energy + Delta-G solvation = -4045.391152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82391 -39.47498 -37.71179 -37.01901 -35.33505 -34.14039 -32.80828 -32.08940 -31.30831 -30.81819 -28.06336 -27.52874 -27.46397 -26.01768 -23.35369 -22.85984 -22.32876 -20.50939 -20.05191 -19.71582 -18.24217 -17.36230 -16.97093 -16.51288 -16.05508 -15.56484 -15.41516 -15.21197 -14.70786 -14.51695 -14.40000 -14.03489 -13.94525 -13.62084 -13.36351 -13.25778 -13.02482 -12.68456 -12.62049 -12.31031 -12.29128 -11.99991 -11.97986 -11.62688 -11.61885 -11.37293 -11.29713 -11.27173 -11.08484 -10.98352 -10.84578 -10.47376 -10.39556 -10.27208 -10.00442 -9.21399 -8.87998 -8.86138 -8.71971 -7.66358 -7.59636 -6.20889 -4.66527 1.32502 1.44265 2.23398 2.92973 3.15058 3.20119 3.21885 3.77978 4.08828 4.19847 4.55188 4.56902 4.61386 4.66077 4.79839 4.88422 4.97487 5.07606 5.13780 5.21675 5.33189 5.36762 5.41606 5.50615 5.54810 5.56068 5.61279 5.66375 5.75914 5.77182 5.85903 5.97233 6.02723 6.07500 6.19498 6.27080 6.32395 6.39994 6.47412 6.51746 6.57627 6.71204 7.00952 7.41457 7.51445 7.86344 8.00806 8.28738 8.47117 9.00399 9.46966 10.56835 10.74913 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.003812 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.812081 B = 7343.336083 C = 9997.152279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.653 3.347 7 O -0.568 6.568 8 N -0.698 5.698 9 C 0.194 3.806 10 H 0.103 0.897 11 C 0.132 3.868 12 N -0.767 5.767 13 C 0.555 3.445 14 O -0.579 6.579 15 C -0.545 4.545 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.089 4.089 24 C -0.101 4.101 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.099 4.099 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.410 0.590 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.381 0.619 42 H 0.269 0.731 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 11.829 -6.840 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.457 6.457 8 N -0.357 5.357 9 C 0.090 3.910 10 H 0.121 0.879 11 C 0.006 3.994 12 N -0.424 5.424 13 C 0.359 3.641 14 O -0.462 6.462 15 C -0.582 4.582 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.090 4.090 24 C -0.119 4.119 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.246 0.754 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.213 0.787 42 H 0.080 0.920 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.257 11.038 -6.379 20.659 hybrid contribution 1.041 0.586 -0.480 1.287 sum -15.216 11.624 -6.859 20.339 Atomic orbital electron populations 1.22508 0.94190 1.05083 1.02167 1.22015 0.94165 0.91473 0.82316 1.21858 1.02430 0.92649 1.02877 1.22521 1.01799 1.03543 0.96262 1.86318 1.71594 1.23751 1.46228 1.18053 0.78643 0.80426 0.82207 1.90879 1.41100 1.70322 1.43398 1.44787 1.54942 1.12189 1.23765 1.20169 0.90818 0.79526 1.00447 0.87912 1.21156 0.83211 0.99384 0.95658 1.46171 1.05226 1.60882 1.30127 1.18211 0.83540 0.78517 0.83807 1.90611 1.85635 1.44241 1.25707 1.20833 0.90268 1.36039 1.11026 0.91515 1.25694 1.00317 0.93166 0.93981 1.70007 1.31040 1.24294 1.14254 0.86439 0.81637 0.79111 0.79592 1.19283 1.20555 1.19290 1.20099 0.95603 0.96705 0.96641 1.20947 0.96748 0.98723 0.95485 1.21095 0.93883 0.99032 1.00090 1.21119 0.99339 0.96069 0.97509 1.21090 0.96713 0.99351 0.96828 1.21008 0.93177 0.98047 0.99544 0.92356 0.91395 0.89296 0.91337 0.90330 0.91576 0.89258 0.91398 0.91977 0.75445 0.92339 0.91193 0.78665 0.92027 0.86247 0.86247 0.86368 0.86126 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 2 C 0.14 1.53 1.13 -90.62 -0.10 1.43 16 3 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 4 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 5 O -0.36 -4.92 9.94 -40.34 -0.40 -5.32 16 6 C 0.65 9.58 8.01 54.06 0.43 10.02 16 7 O -0.57 -9.19 11.54 -19.28 -0.22 -9.41 16 8 N -0.70 -9.70 3.77 -59.87 -0.23 -9.93 16 9 C 0.19 2.84 2.33 -69.09 -0.16 2.68 16 10 H 0.10 1.57 7.44 -51.93 -0.39 1.19 16 11 C 0.13 2.38 5.21 -4.04 -0.02 2.36 16 12 N -0.77 -16.37 5.38 -61.72 -0.33 -16.70 16 13 C 0.56 15.38 7.75 -12.98 -0.10 15.28 16 14 O -0.58 -18.36 15.02 5.20 0.08 -18.29 16 15 C -0.54 -15.16 9.54 -35.63 -0.34 -15.50 16 16 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 17 C 0.09 2.44 5.50 -17.36 -0.10 2.34 16 18 N -0.77 -22.78 11.83 55.55 0.66 -22.12 16 19 Si 0.91 19.99 29.56 -169.99 -5.02 14.97 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 23 C -0.09 -1.22 4.91 -104.62 -0.51 -1.74 16 24 C -0.10 -1.31 9.32 -39.58 -0.37 -1.68 16 25 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 27 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 28 C -0.10 -1.28 9.67 -39.59 -0.38 -1.66 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.41 5.45 8.71 -40.82 -0.36 5.10 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.38 7.42 8.12 -40.82 -0.33 7.09 16 42 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 43 H 0.12 1.46 7.73 -52.49 -0.41 1.05 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.12 1.46 8.04 -52.49 -0.42 1.04 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -34.53 392.85 -8.58 -43.10 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -7.13 Total: 13.82 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.89 Total: 3.95 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.10 Total: -48.75 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.55 Total: -33.01 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.53 -8.58 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187315335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.518 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds