Wall clock time and date at job start Tue Mar 31 2020 17:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46776 * 35.00022 * 9 8 6 11 11 C 1.52998 * 109.47246 * 155.00083 * 9 8 6 12 12 N 1.46497 * 109.47174 * 305.00324 * 11 9 8 13 13 C 1.34783 * 119.99701 * 180.02562 * 12 11 9 14 14 O 1.21684 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.46379 * 119.99365 * 180.02562 * 13 12 11 16 16 H 1.07996 * 120.00446 * 359.97438 * 15 13 12 17 17 C 1.40055 * 119.99293 * 179.97438 * 15 13 12 18 18 N 1.30671 * 120.00027 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99641 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47395 * 59.99461 * 19 17 15 21 21 H 1.48497 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47081 * 299.99759 * 19 17 15 23 23 C 1.50696 * 109.47365 * 275.00798 * 9 8 6 24 24 C 1.38236 * 119.99802 * 319.72135 * 23 9 8 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 9 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47146 * 65.00205 * 11 9 8 40 40 H 1.09006 * 109.46999 * 185.00304 * 11 9 8 41 41 H 0.96998 * 120.00251 * 0.02562 * 12 11 9 42 42 H 0.97001 * 119.99593 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00085 * 359.97438 * 24 23 9 44 44 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 45 45 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 46 46 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 1.6266 -4.5494 1.6070 11 6 2.7030 -4.7855 3.4581 12 7 4.0381 -4.6191 2.8784 13 6 5.1087 -5.1714 3.4827 14 8 4.9664 -5.8079 4.5101 15 6 6.4428 -5.0047 2.9038 16 1 6.5691 -4.4394 1.9922 17 6 7.5554 -5.5782 3.5320 18 7 7.4025 -6.2616 4.6352 19 14 9.2579 -5.3648 2.7937 20 1 9.5901 -3.9191 2.7251 21 1 10.2566 -6.0630 3.6423 22 1 9.2804 -5.9432 1.4261 23 6 0.3204 -4.1331 3.2423 24 6 0.0094 -3.2638 4.2712 25 6 -1.2339 -3.3217 4.8730 26 6 -2.1627 -4.2548 4.4519 27 6 -1.8498 -5.1274 3.4266 28 6 -0.6084 -5.0667 2.8218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 2.6870 -4.3602 4.4616 40 1 2.4587 -5.8466 3.5091 41 1 4.1515 -4.1114 2.0597 42 1 8.1732 -6.6585 5.0705 43 1 0.7366 -2.5375 4.6030 44 1 -1.4783 -2.6396 5.6738 45 1 -3.1330 -4.3017 4.9238 46 1 -2.5758 -5.8562 3.0973 47 1 -0.3637 -5.7487 2.0210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187315335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:14 Heat of formation + Delta-G solvation = -123.664084 kcal Electronic energy + Delta-G solvation = -29265.266094 eV Core-core repulsion = 25218.875794 eV Total energy + Delta-G solvation = -4046.390300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93259 -40.52949 -39.35347 -38.37105 -36.70712 -35.17752 -34.71398 -33.97090 -32.39479 -31.75605 -29.66080 -28.32846 -28.26844 -27.85757 -24.76372 -23.86647 -23.30972 -21.75105 -21.57543 -21.10704 -19.50373 -19.05996 -18.06891 -17.67443 -17.34726 -17.09715 -16.69704 -16.47605 -16.05093 -15.76731 -15.56525 -15.33809 -15.29826 -14.92887 -14.44825 -14.32167 -14.23860 -14.17568 -13.75724 -13.38670 -13.29472 -13.14924 -13.05787 -12.89009 -12.83420 -12.75900 -12.64284 -12.60376 -12.49023 -12.27784 -12.13858 -12.04544 -11.90197 -11.35494 -11.09664 -10.91748 -10.39032 -9.91934 -9.82297 -9.67657 -9.54255 -8.29269 -6.85738 0.35082 0.50097 1.16281 1.40715 1.43573 1.55263 1.77174 2.24504 2.47072 2.77390 3.05119 3.14918 3.61691 3.75498 3.78343 3.81677 3.84587 3.91297 3.97963 4.13755 4.19887 4.28526 4.53544 4.60061 4.62281 4.64410 4.66253 4.74848 4.79546 4.84672 4.88939 4.90668 5.03778 5.05427 5.14839 5.22340 5.31793 5.31810 5.38331 5.54401 5.56683 5.60154 5.66832 5.85391 6.08867 6.14621 6.23286 6.35948 6.86944 7.33178 7.48642 8.47367 8.66418 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.003812 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.812081 B = 7343.336083 C = 9997.152279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.654 3.346 7 O -0.584 6.584 8 N -0.695 5.695 9 C 0.215 3.785 10 H 0.096 0.904 11 C 0.140 3.860 12 N -0.752 5.752 13 C 0.541 3.459 14 O -0.628 6.628 15 C -0.573 4.573 16 H 0.084 0.916 17 C 0.032 3.968 18 N -0.819 5.819 19 Si 0.995 3.005 20 H -0.254 1.254 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.108 4.108 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.116 4.116 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.412 0.588 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.393 0.607 42 H 0.275 0.725 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.367 13.594 -8.062 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.407 3.593 7 O -0.474 6.474 8 N -0.354 5.354 9 C 0.110 3.890 10 H 0.114 0.886 11 C 0.015 3.985 12 N -0.407 5.407 13 C 0.345 3.655 14 O -0.515 6.515 15 C -0.609 4.609 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.449 5.449 19 Si 0.814 3.186 20 H -0.178 1.178 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.110 4.110 24 C -0.134 4.134 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.135 4.135 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.248 0.752 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.226 0.774 42 H 0.085 0.915 43 H 0.138 0.862 44 H 0.160 0.840 45 H 0.166 0.834 46 H 0.163 0.837 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.762 12.847 -7.640 22.458 hybrid contribution 1.052 0.068 -0.109 1.059 sum -15.710 12.914 -7.749 21.763 Atomic orbital electron populations 1.22446 0.93798 1.03641 1.03495 1.22422 0.94680 0.92651 0.81423 1.21888 1.02340 0.90724 1.04346 1.22483 1.01545 1.02302 0.97461 1.86333 1.71651 1.22944 1.47518 1.18088 0.78420 0.80853 0.81901 1.90878 1.41806 1.70821 1.43936 1.44691 1.54975 1.11848 1.23843 1.19788 0.90449 0.79525 0.99208 0.88648 1.21134 0.82344 0.99118 0.95931 1.45776 1.05466 1.59559 1.29891 1.18537 0.85133 0.78338 0.83466 1.90566 1.86680 1.46477 1.27817 1.21367 0.90972 1.36687 1.11911 0.89752 1.26912 1.05401 0.92015 0.94052 1.70170 1.32940 1.25545 1.16209 0.85111 0.74892 0.79743 0.78811 1.17829 1.19857 1.18057 1.20039 0.95165 0.98071 0.97692 1.21096 0.97757 0.98851 0.95661 1.21424 0.93289 0.99521 1.00363 1.21524 1.00371 0.95048 0.96897 1.21428 0.96430 0.99820 0.96609 1.21215 0.93981 0.98111 1.00161 0.92110 0.88967 0.92019 0.91505 0.87743 0.91214 0.91923 0.88903 0.92281 0.75153 0.93146 0.92576 0.77387 0.91532 0.86175 0.84008 0.83396 0.83687 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 2 C 0.12 2.62 1.13 -10.79 -0.01 2.61 16 3 C -0.14 -2.00 8.85 71.98 0.64 -1.36 16 4 C -0.18 -3.84 8.37 71.98 0.60 -3.23 16 5 O -0.37 -9.87 9.94 -55.54 -0.55 -10.42 16 6 C 0.65 19.40 8.01 129.79 1.04 20.44 16 7 O -0.58 -19.27 11.54 19.82 0.23 -19.04 16 8 N -0.69 -19.77 3.77 -573.74 -2.16 -21.93 16 9 C 0.21 6.50 2.33 44.24 0.10 6.61 16 10 H 0.10 3.04 7.44 -2.39 -0.02 3.02 16 11 C 0.14 5.29 5.21 86.38 0.45 5.74 16 12 N -0.75 -33.11 5.38 -467.40 -2.52 -35.63 16 13 C 0.54 30.97 7.75 86.36 0.67 31.64 16 14 O -0.63 -41.58 15.02 -4.30 -0.06 -41.64 16 15 C -0.57 -32.26 9.54 24.83 0.24 -32.03 16 16 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 17 C 0.03 1.76 5.50 85.31 0.47 2.22 16 18 N -0.82 -49.84 11.83 21.84 0.26 -49.58 16 19 Si 0.99 40.78 29.56 68.60 2.03 42.81 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 C -0.11 -3.03 4.91 -19.87 -0.10 -3.13 16 24 C -0.12 -2.98 9.32 22.27 0.21 -2.78 16 25 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 26 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 27 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 28 C -0.12 -3.00 9.67 22.27 0.22 -2.78 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.60 5.88 -2.38 -0.01 1.59 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.69 5.88 -2.38 -0.01 1.67 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.41 11.25 8.71 -92.71 -0.81 10.44 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.39 15.57 8.12 -92.71 -0.75 14.81 16 42 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 43 H 0.12 2.97 7.73 -2.91 -0.02 2.95 16 44 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 47 H 0.13 3.06 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -77.32 392.85 2.45 -74.88 By element: Atomic # 1 Polarization: 47.27 SS G_CDS: -0.57 Total: 46.70 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.80 Total: 13.84 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.42 Total: -107.14 kcal Atomic # 8 Polarization: -70.71 SS G_CDS: -0.39 Total: -71.10 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -77.32 2.45 -74.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187315335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.785 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds