Wall clock time and date at job start Tue Mar 31 2020 17:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47021 * 2 1 4 4 C 1.52999 * 109.47232 * 239.99853 * 2 1 3 5 5 O 1.45205 * 109.47299 * 120.00060 * 2 1 3 6 6 C 1.34637 * 116.99706 * 59.99583 * 5 2 1 7 7 O 1.21512 * 120.00406 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99709 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00189 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.46859 * 324.99835 * 9 8 6 11 11 C 1.52996 * 109.47564 * 204.99597 * 9 8 6 12 12 N 1.46504 * 109.46681 * 54.99482 * 11 9 8 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 9 14 14 O 1.21693 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.46377 * 120.00307 * 180.27510 * 13 12 11 16 16 H 1.08001 * 119.99387 * 359.73219 * 15 13 12 17 17 C 1.40043 * 120.00458 * 179.72666 * 15 13 12 18 18 N 1.30674 * 120.00000 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00093 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47330 * 90.00058 * 19 17 15 21 21 H 1.48502 * 109.47465 * 209.99918 * 19 17 15 22 22 H 1.48496 * 109.47402 * 330.00061 * 19 17 15 23 23 C 1.50706 * 109.47574 * 84.99451 * 9 8 6 24 24 C 1.38237 * 119.99627 * 39.72556 * 23 9 8 25 25 C 1.38233 * 120.00065 * 179.78520 * 24 23 9 26 26 C 1.38237 * 119.99711 * 0.45195 * 25 24 23 27 27 C 1.38233 * 120.00009 * 359.80152 * 26 25 24 28 28 C 1.38230 * 120.00314 * 220.00645 * 23 9 8 29 29 H 1.09003 * 109.46785 * 299.99618 * 1 2 3 30 30 H 1.08997 * 109.47166 * 60.00089 * 1 2 3 31 31 H 1.09004 * 109.46909 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46897 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47077 * 299.99965 * 3 2 1 34 34 H 1.09001 * 109.46589 * 60.00235 * 3 2 1 35 35 H 1.08999 * 109.47374 * 300.00409 * 4 2 1 36 36 H 1.09006 * 109.46772 * 59.99970 * 4 2 1 37 37 H 1.08997 * 109.47274 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00248 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.47328 * 294.99815 * 11 9 8 40 40 H 1.08997 * 109.47540 * 174.99562 * 11 9 8 41 41 H 0.97000 * 120.00410 * 0.02562 * 12 11 9 42 42 H 0.96998 * 119.99723 * 180.02562 * 18 17 15 43 43 H 1.07997 * 119.99991 * 0.02562 * 24 23 9 44 44 H 1.07994 * 120.00368 * 180.27542 * 25 24 23 45 45 H 1.08000 * 120.00134 * 179.83532 * 26 25 24 46 46 H 1.08008 * 120.00284 * 179.97438 * 27 26 25 47 47 H 1.08000 * 119.99799 * 359.97188 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6654 2.4171 9 6 1.6741 -4.0668 2.5832 10 1 0.6652 -4.2094 2.1958 11 6 1.7067 -4.4333 4.0682 12 7 0.8669 -3.4978 4.8205 13 6 0.7431 -3.6277 6.1563 14 8 1.3292 -4.5219 6.7375 15 6 -0.1008 -2.6968 6.9072 16 1 -0.6207 -1.9031 6.3913 17 6 -0.2340 -2.8353 8.2944 18 7 0.3955 -3.7954 8.9185 19 14 -1.3114 -1.6477 9.2524 20 1 -2.6972 -2.1777 9.3164 21 1 -0.7763 -1.4941 10.6291 22 1 -1.3175 -0.3270 8.5736 23 6 2.6322 -4.9505 1.8266 24 6 3.9844 -4.6633 1.8268 25 6 4.8638 -5.4763 1.1366 26 6 4.3899 -6.5713 0.4384 27 6 3.0371 -6.8555 0.4339 28 6 2.1582 -6.0449 1.1277 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.6269 -2.2366 3.0833 39 1 2.7318 -4.3762 4.4342 40 1 1.3296 -5.4473 4.2007 41 1 0.3993 -2.7853 4.3572 42 1 0.3029 -3.8915 9.8793 43 1 4.3542 -3.8059 2.3695 44 1 5.9207 -5.2545 1.1404 45 1 5.0766 -7.2050 -0.1031 46 1 2.6667 -7.7107 -0.1119 47 1 1.1013 -6.2669 1.1243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187315359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:18 Heat of formation + Delta-G solvation = -100.599049 kcal Electronic energy + Delta-G solvation = -29264.680456 eV Core-core repulsion = 25219.290331 eV Total energy + Delta-G solvation = -4045.390125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82441 -39.47467 -37.71166 -37.01873 -35.33453 -34.14083 -32.80935 -32.08972 -31.30752 -30.81744 -28.06595 -27.52910 -27.46415 -26.01926 -23.35372 -22.85993 -22.32835 -20.50950 -20.05218 -19.71725 -18.24253 -17.36399 -16.97146 -16.51348 -16.05429 -15.56612 -15.41802 -15.21468 -14.70587 -14.51574 -14.39990 -14.03157 -13.94370 -13.62090 -13.36482 -13.25858 -13.02550 -12.68657 -12.62171 -12.31137 -12.29489 -12.00044 -11.97955 -11.62812 -11.61909 -11.37300 -11.30081 -11.26344 -11.07923 -10.98873 -10.85858 -10.47882 -10.39562 -10.24544 -10.00464 -9.21585 -8.88205 -8.86741 -8.71849 -7.66190 -7.59678 -6.21121 -4.66582 1.32533 1.44251 2.23313 2.92925 3.13253 3.20322 3.23531 3.77961 4.08746 4.19761 4.55110 4.56822 4.61346 4.66036 4.79798 4.88422 4.97409 5.07638 5.13690 5.21661 5.33216 5.36743 5.41569 5.50623 5.54837 5.56023 5.61267 5.66341 5.75909 5.77102 5.85871 5.97230 6.02670 6.07486 6.19485 6.27077 6.32430 6.39944 6.47420 6.51732 6.57554 6.71239 7.00939 7.41504 7.51382 7.86308 8.00777 8.28932 8.47072 9.00471 9.46883 10.56670 10.74798 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.003810 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.861955 B = 7347.343012 C = 9999.420255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.364 6.364 6 C 0.653 3.347 7 O -0.568 6.568 8 N -0.698 5.698 9 C 0.194 3.806 10 H 0.103 0.897 11 C 0.132 3.868 12 N -0.767 5.767 13 C 0.555 3.445 14 O -0.579 6.579 15 C -0.544 4.544 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.089 4.089 24 C -0.101 4.101 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.099 4.099 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.410 0.590 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.382 0.618 42 H 0.268 0.732 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 4.355 -19.836 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.457 6.457 8 N -0.357 5.357 9 C 0.090 3.910 10 H 0.121 0.879 11 C 0.006 3.994 12 N -0.424 5.424 13 C 0.359 3.641 14 O -0.462 6.462 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.090 4.090 24 C -0.119 4.119 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.118 4.118 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.246 0.754 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.213 0.787 42 H 0.079 0.921 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.423 3.400 -19.671 20.686 hybrid contribution -0.467 1.102 0.448 1.278 sum 4.956 4.502 -19.223 20.356 Atomic orbital electron populations 1.22522 0.93979 1.05198 1.02424 1.22020 0.94401 0.91413 0.82136 1.21859 1.02152 0.92723 1.03081 1.22507 1.01402 1.03597 0.96441 1.86318 1.71509 1.23785 1.46279 1.18052 0.78726 0.80319 0.82232 1.90880 1.41194 1.70470 1.43159 1.44787 1.55511 1.11882 1.23505 1.20172 0.97768 0.77072 0.95948 0.87909 1.21154 0.96759 0.95244 0.86249 1.46172 1.53328 1.34057 1.08843 1.18222 0.81839 0.85318 0.78723 1.90613 1.50788 1.36673 1.68121 1.20865 1.30106 1.14946 0.92200 0.91472 1.25694 0.94633 0.94954 0.97889 1.70018 1.33581 1.26770 1.09221 0.86380 0.80351 0.81137 0.78938 1.19738 1.20453 1.18919 1.20100 0.94377 0.96324 0.98243 1.20942 0.92692 0.99392 0.98879 1.21093 0.99474 0.95511 0.98017 1.21121 0.95636 0.97605 0.99679 1.21093 0.93496 0.99630 0.99761 1.21008 0.99970 0.94494 0.96308 0.91973 0.91396 0.89261 0.91579 0.90322 0.91338 0.89292 0.91395 0.92358 0.75444 0.92338 0.91190 0.78661 0.92089 0.86252 0.86248 0.86368 0.86124 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 2 C 0.14 1.53 1.13 -90.62 -0.10 1.43 16 3 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 4 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 5 O -0.36 -4.92 9.94 -40.32 -0.40 -5.32 16 6 C 0.65 9.58 8.01 54.05 0.43 10.01 16 7 O -0.57 -9.18 11.54 -19.28 -0.22 -9.41 16 8 N -0.70 -9.70 3.75 -59.87 -0.22 -9.92 16 9 C 0.19 2.84 2.33 -69.08 -0.16 2.68 16 10 H 0.10 1.57 7.44 -51.93 -0.39 1.19 16 11 C 0.13 2.38 5.21 -4.04 -0.02 2.36 16 12 N -0.77 -16.37 5.38 -61.72 -0.33 -16.70 16 13 C 0.55 15.38 7.75 -12.99 -0.10 15.28 16 14 O -0.58 -18.37 15.02 5.20 0.08 -18.29 16 15 C -0.54 -15.14 9.54 -35.63 -0.34 -15.48 16 16 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 17 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 18 N -0.77 -22.77 11.83 55.55 0.66 -22.12 16 19 Si 0.91 19.99 29.56 -169.99 -5.02 14.97 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 23 C -0.09 -1.22 4.91 -104.62 -0.51 -1.74 16 24 C -0.10 -1.31 9.33 -39.58 -0.37 -1.68 16 25 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 28 C -0.10 -1.28 9.67 -39.59 -0.38 -1.66 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.41 5.45 8.71 -40.82 -0.36 5.09 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.38 7.42 8.12 -40.82 -0.33 7.09 16 42 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 43 H 0.12 1.46 7.71 -52.49 -0.40 1.05 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.12 1.46 8.04 -52.49 -0.42 1.04 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -34.56 392.83 -8.57 -43.13 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -7.13 Total: 13.78 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.90 Total: 3.95 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.10 Total: -48.74 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.55 Total: -33.01 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.56 -8.57 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187315359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.466 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds