Wall clock time and date at job start Tue Mar 31 2020 17:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47021 * 2 1 4 4 C 1.52999 * 109.47232 * 239.99853 * 2 1 3 5 5 O 1.45205 * 109.47299 * 120.00060 * 2 1 3 6 6 C 1.34637 * 116.99706 * 59.99583 * 5 2 1 7 7 O 1.21512 * 120.00406 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99709 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00189 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.46859 * 324.99835 * 9 8 6 11 11 C 1.52996 * 109.47564 * 204.99597 * 9 8 6 12 12 N 1.46504 * 109.46681 * 54.99482 * 11 9 8 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 9 14 14 O 1.21693 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.46377 * 120.00307 * 180.27510 * 13 12 11 16 16 H 1.08001 * 119.99387 * 359.73219 * 15 13 12 17 17 C 1.40043 * 120.00458 * 179.72666 * 15 13 12 18 18 N 1.30674 * 120.00000 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00093 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47330 * 90.00058 * 19 17 15 21 21 H 1.48502 * 109.47465 * 209.99918 * 19 17 15 22 22 H 1.48496 * 109.47402 * 330.00061 * 19 17 15 23 23 C 1.50706 * 109.47574 * 84.99451 * 9 8 6 24 24 C 1.38237 * 119.99627 * 39.72556 * 23 9 8 25 25 C 1.38233 * 120.00065 * 179.78520 * 24 23 9 26 26 C 1.38237 * 119.99711 * 0.45195 * 25 24 23 27 27 C 1.38233 * 120.00009 * 359.80152 * 26 25 24 28 28 C 1.38230 * 120.00314 * 220.00645 * 23 9 8 29 29 H 1.09003 * 109.46785 * 299.99618 * 1 2 3 30 30 H 1.08997 * 109.47166 * 60.00089 * 1 2 3 31 31 H 1.09004 * 109.46909 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46897 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47077 * 299.99965 * 3 2 1 34 34 H 1.09001 * 109.46589 * 60.00235 * 3 2 1 35 35 H 1.08999 * 109.47374 * 300.00409 * 4 2 1 36 36 H 1.09006 * 109.46772 * 59.99970 * 4 2 1 37 37 H 1.08997 * 109.47274 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00248 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.47328 * 294.99815 * 11 9 8 40 40 H 1.08997 * 109.47540 * 174.99562 * 11 9 8 41 41 H 0.97000 * 120.00410 * 0.02562 * 12 11 9 42 42 H 0.96998 * 119.99723 * 180.02562 * 18 17 15 43 43 H 1.07997 * 119.99991 * 0.02562 * 24 23 9 44 44 H 1.07994 * 120.00368 * 180.27542 * 25 24 23 45 45 H 1.08000 * 120.00134 * 179.83532 * 26 25 24 46 46 H 1.08008 * 120.00284 * 179.97438 * 27 26 25 47 47 H 1.08000 * 119.99799 * 359.97188 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6654 2.4171 9 6 1.6741 -4.0668 2.5832 10 1 0.6652 -4.2094 2.1958 11 6 1.7067 -4.4333 4.0682 12 7 0.8669 -3.4978 4.8205 13 6 0.7431 -3.6277 6.1563 14 8 1.3292 -4.5219 6.7375 15 6 -0.1008 -2.6968 6.9072 16 1 -0.6207 -1.9031 6.3913 17 6 -0.2340 -2.8353 8.2944 18 7 0.3955 -3.7954 8.9185 19 14 -1.3114 -1.6477 9.2524 20 1 -2.6972 -2.1777 9.3164 21 1 -0.7763 -1.4941 10.6291 22 1 -1.3175 -0.3270 8.5736 23 6 2.6322 -4.9505 1.8266 24 6 3.9844 -4.6633 1.8268 25 6 4.8638 -5.4763 1.1366 26 6 4.3899 -6.5713 0.4384 27 6 3.0371 -6.8555 0.4339 28 6 2.1582 -6.0449 1.1277 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.6269 -2.2366 3.0833 39 1 2.7318 -4.3762 4.4342 40 1 1.3296 -5.4473 4.2007 41 1 0.3993 -2.7853 4.3572 42 1 0.3029 -3.8915 9.8793 43 1 4.3542 -3.8059 2.3695 44 1 5.9207 -5.2545 1.1404 45 1 5.0766 -7.2050 -0.1031 46 1 2.6667 -7.7107 -0.1119 47 1 1.1013 -6.2669 1.1243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187315359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:17 Heat of formation + Delta-G solvation = -123.655152 kcal Electronic energy + Delta-G solvation = -29265.680244 eV Core-core repulsion = 25219.290331 eV Total energy + Delta-G solvation = -4046.389913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93278 -40.52881 -39.35367 -38.37030 -36.70636 -35.17790 -34.71505 -33.97127 -32.39351 -31.75514 -29.66351 -28.32864 -28.26853 -27.86004 -24.76333 -23.86656 -23.30876 -21.75241 -21.57566 -21.10695 -19.50431 -19.06138 -18.06959 -17.67616 -17.34954 -17.09585 -16.69934 -16.47791 -16.04630 -15.76356 -15.56547 -15.33812 -15.29758 -14.93058 -14.45154 -14.32182 -14.24086 -14.17582 -13.76000 -13.38677 -13.29558 -13.14518 -13.05504 -12.89068 -12.83372 -12.77705 -12.64853 -12.60812 -12.49104 -12.27811 -12.13030 -12.01483 -11.90342 -11.35514 -11.09674 -10.93206 -10.39166 -9.91653 -9.82285 -9.67595 -9.54307 -8.29542 -6.85823 0.35142 0.50109 1.16223 1.40750 1.41619 1.56899 1.77165 2.24338 2.46899 2.77351 3.05108 3.14863 3.61603 3.75485 3.78326 3.81644 3.84562 3.91268 3.97929 4.13812 4.19890 4.28543 4.53561 4.60109 4.62310 4.64389 4.66306 4.74917 4.79531 4.84678 4.88918 4.90633 5.03792 5.05393 5.14851 5.22319 5.31790 5.31968 5.38314 5.54405 5.56672 5.60167 5.66884 5.85383 6.08876 6.14553 6.23351 6.35931 6.86982 7.33173 7.48551 8.47269 8.66374 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.003810 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.861955 B = 7347.343012 C = 9999.420255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.177 4.177 5 O -0.370 6.370 6 C 0.654 3.346 7 O -0.584 6.584 8 N -0.695 5.695 9 C 0.215 3.785 10 H 0.096 0.904 11 C 0.140 3.860 12 N -0.752 5.752 13 C 0.541 3.459 14 O -0.628 6.628 15 C -0.572 4.572 16 H 0.084 0.916 17 C 0.031 3.969 18 N -0.819 5.819 19 Si 0.995 3.005 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.250 1.250 23 C -0.108 4.108 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.116 4.116 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.412 0.588 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.393 0.607 42 H 0.275 0.725 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 5.950 -21.337 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.234 4.234 5 O -0.284 6.284 6 C 0.407 3.593 7 O -0.474 6.474 8 N -0.354 5.354 9 C 0.110 3.890 10 H 0.114 0.886 11 C 0.015 3.985 12 N -0.407 5.407 13 C 0.345 3.655 14 O -0.515 6.515 15 C -0.609 4.609 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.449 5.449 19 Si 0.815 3.185 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.173 1.173 23 C -0.110 4.110 24 C -0.134 4.134 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.135 4.135 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.248 0.752 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.226 0.774 42 H 0.085 0.915 43 H 0.138 0.862 44 H 0.160 0.840 45 H 0.166 0.834 46 H 0.163 0.837 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.414 5.024 -21.236 22.484 hybrid contribution -0.412 0.570 0.793 1.060 sum 5.001 5.594 -20.443 21.777 Atomic orbital electron populations 1.22483 0.94071 1.03719 1.03515 1.22427 0.94562 0.92697 0.81491 1.21890 1.02406 0.90724 1.04278 1.22445 1.01489 1.02184 0.97262 1.86333 1.71551 1.22966 1.47596 1.18087 0.78468 0.80729 0.81978 1.90879 1.41904 1.70965 1.43697 1.44691 1.55441 1.11602 1.23623 1.19791 0.98025 0.77876 0.93279 0.88646 1.21132 0.95348 0.93846 0.88196 1.45776 1.53029 1.34464 1.07412 1.18544 0.81580 0.84875 0.80490 1.90569 1.52684 1.38511 1.69777 1.21390 1.30579 1.15580 0.93313 0.89764 1.26911 0.95822 0.96775 0.98888 1.70176 1.35542 1.29179 1.09979 0.85055 0.77897 0.78508 0.77067 1.18751 1.19705 1.17347 1.20040 0.94590 0.96935 0.99400 1.21092 0.92663 1.00047 0.99563 1.21422 1.00458 0.95325 0.97390 1.21526 0.95956 0.97410 0.98954 1.21431 0.93689 0.99920 0.99246 1.21215 1.00704 0.94698 0.96855 0.92284 0.88901 0.91925 0.91214 0.87736 0.91510 0.92016 0.88967 0.92108 0.75150 0.93145 0.92575 0.77385 0.91539 0.86174 0.84008 0.83397 0.83687 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 8.37 71.98 0.60 -3.23 16 2 C 0.12 2.62 1.13 -10.79 -0.01 2.61 16 3 C -0.14 -2.00 8.85 71.98 0.64 -1.36 16 4 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 5 O -0.37 -9.86 9.94 -55.47 -0.55 -10.42 16 6 C 0.65 19.39 8.01 129.79 1.04 20.43 16 7 O -0.58 -19.26 11.54 19.80 0.23 -19.03 16 8 N -0.69 -19.76 3.75 -573.73 -2.15 -21.91 16 9 C 0.21 6.50 2.33 44.25 0.10 6.61 16 10 H 0.10 3.04 7.44 -2.38 -0.02 3.02 16 11 C 0.14 5.29 5.21 86.38 0.45 5.74 16 12 N -0.75 -33.10 5.38 -467.40 -2.52 -35.62 16 13 C 0.54 30.96 7.75 86.36 0.67 31.63 16 14 O -0.63 -41.58 15.02 -4.33 -0.06 -41.64 16 15 C -0.57 -32.23 9.54 24.83 0.24 -31.99 16 16 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 17 C 0.03 1.74 5.50 85.30 0.47 2.21 16 18 N -0.82 -49.83 11.83 21.83 0.26 -49.58 16 19 Si 1.00 40.81 29.56 68.60 2.03 42.84 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 23 C -0.11 -3.03 4.91 -19.86 -0.10 -3.13 16 24 C -0.12 -2.98 9.33 22.27 0.21 -2.77 16 25 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 26 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 27 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 28 C -0.12 -3.00 9.67 22.27 0.22 -2.78 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.69 5.88 -2.38 -0.01 1.67 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 36 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.41 11.24 8.71 -92.71 -0.81 10.43 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.39 15.57 8.12 -92.71 -0.75 14.81 16 42 H 0.27 15.13 8.29 -92.71 -0.77 14.36 16 43 H 0.12 2.97 7.71 -2.91 -0.02 2.95 16 44 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 47 H 0.13 3.06 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -77.37 392.83 2.46 -74.91 By element: Atomic # 1 Polarization: 47.15 SS G_CDS: -0.57 Total: 46.59 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.80 Total: 13.85 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -4.41 Total: -107.10 kcal Atomic # 8 Polarization: -70.70 SS G_CDS: -0.39 Total: -71.09 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -77.37 2.46 -74.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187315359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.743 kcal (2) G-P(sol) polarization free energy of solvation -77.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds