Wall clock time and date at job start Tue Mar 31 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47290 * 2 1 4 4 H 1.09005 * 109.47398 * 303.29833 * 3 2 1 5 5 C 1.50702 * 109.47673 * 183.29919 * 3 2 1 6 6 H 1.07997 * 119.99839 * 245.34627 * 5 3 2 7 7 C 1.37881 * 119.99900 * 65.34026 * 5 3 2 8 8 N 1.31518 * 119.99665 * 7.92828 * 7 5 3 9 9 Si 1.86800 * 119.99957 * 187.93050 * 7 5 3 10 10 H 1.48494 * 109.47191 * 84.99421 * 9 7 5 11 11 H 1.48501 * 109.46844 * 204.99386 * 9 7 5 12 12 H 1.48502 * 109.47011 * 324.98983 * 9 7 5 13 13 O 1.45203 * 109.47260 * 63.29452 * 3 2 1 14 14 C 1.34228 * 117.00499 * 270.00300 * 13 3 2 15 15 O 1.20827 * 119.99765 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00451 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47639 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.47152 * 54.99395 * 17 16 14 19 19 N 1.46509 * 109.46603 * 294.99636 * 17 16 14 20 20 C 1.34777 * 119.99840 * 294.80190 * 19 17 16 21 21 N 1.34780 * 119.99624 * 184.73650 * 20 19 17 22 22 O 1.21581 * 120.00311 * 4.73869 * 20 19 17 23 23 C 1.50700 * 109.47603 * 174.99856 * 17 16 14 24 24 C 1.38258 * 119.99761 * 15.11513 * 23 17 16 25 25 C 1.38216 * 119.99725 * 179.76909 * 24 23 17 26 26 C 1.38252 * 119.99768 * 0.50523 * 25 24 23 27 27 C 1.38209 * 120.00208 * 359.75094 * 26 25 24 28 28 C 1.38207 * 120.00192 * 195.38883 * 23 17 16 29 29 C 1.50708 * 119.99839 * 0.02562 * 28 23 17 30 30 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47049 * 300.00391 * 1 2 3 32 32 H 1.09002 * 109.46792 * 60.00140 * 1 2 3 33 33 H 1.08998 * 109.47384 * 240.00038 * 2 1 3 34 34 H 1.08999 * 109.47184 * 119.99536 * 2 1 3 35 35 H 0.97002 * 119.99746 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.46984 * 299.99741 * 16 14 13 37 37 H 1.09004 * 109.47492 * 59.99502 * 16 14 13 38 38 H 0.97004 * 119.99903 * 114.80172 * 19 17 16 39 39 H 0.96994 * 119.99915 * 359.97438 * 21 20 19 40 40 H 0.97005 * 119.99273 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.00354 * 359.97438 * 24 23 17 42 42 H 1.07995 * 119.99709 * 180.22765 * 25 24 23 43 43 H 1.08006 * 119.99428 * 179.72123 * 26 25 24 44 44 H 1.08007 * 119.99926 * 179.97438 * 27 26 25 45 45 H 1.08993 * 109.47170 * 89.99818 * 29 28 23 46 46 H 1.08997 * 109.46522 * 210.00028 * 29 28 23 47 47 H 1.09001 * 109.46836 * 329.99847 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6292 1.9732 -0.8590 5 6 3.5448 1.4434 -0.0818 6 1 4.1303 1.8174 0.7451 7 6 4.1741 0.9665 -1.2121 8 7 3.4672 0.6570 -2.2771 9 14 6.0305 0.7599 -1.2308 10 1 6.3877 -0.5586 -0.6485 11 1 6.5226 0.8328 -2.6300 12 1 6.6570 1.8413 -0.4288 13 8 1.6213 2.1039 1.2229 14 6 0.4383 2.7376 1.1988 15 8 -0.2252 2.7400 0.1891 16 6 -0.0617 3.4471 2.4307 17 6 -1.4229 4.0810 2.1371 18 1 -2.1072 3.3174 1.7674 19 7 -1.2658 5.1277 1.1240 20 6 -0.5450 6.2320 1.4022 21 7 -0.4792 7.2370 0.5066 22 8 0.0458 6.3216 2.4610 23 6 -1.9791 4.6847 3.4009 24 6 -1.1538 4.8879 4.4913 25 6 -1.6629 5.4460 5.6488 26 6 -2.9997 5.7914 5.7197 27 6 -3.8259 5.5833 4.6314 28 6 -3.3155 5.0300 3.4718 29 6 -4.2166 4.8022 2.2855 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9099 0.3219 -3.0725 36 1 -0.1632 2.7311 3.2463 37 1 0.6476 4.2243 2.7156 38 1 -1.6805 5.0258 0.2530 39 1 -0.9502 7.1654 -0.3383 40 1 0.0393 8.0320 0.7071 41 1 -0.1105 4.6137 4.4376 42 1 -1.0174 5.6082 6.4992 43 1 -3.3984 6.2233 6.6258 44 1 -4.8703 5.8527 4.6870 45 1 -4.6580 3.8077 2.3501 46 1 -5.0082 5.5515 2.2815 47 1 -3.6353 4.8827 1.3670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187959346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:59 Heat of formation + Delta-G solvation = -103.757605 kcal Electronic energy + Delta-G solvation = -29979.425823 eV Core-core repulsion = 25933.898732 eV Total energy + Delta-G solvation = -4045.527090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70802 -39.33135 -38.88507 -36.10031 -34.92930 -33.70224 -33.42056 -32.76480 -31.50345 -31.23773 -29.47670 -27.31139 -26.87526 -24.90580 -23.19339 -22.02679 -21.64710 -20.73316 -19.86703 -19.25479 -18.47656 -17.45138 -16.95175 -16.61680 -16.12438 -15.71530 -15.45675 -14.99859 -14.93243 -14.88842 -14.46027 -14.31969 -14.07153 -13.62070 -13.18049 -13.04771 -12.93040 -12.80688 -12.48387 -12.33672 -12.03895 -11.88914 -11.65147 -11.48537 -11.23179 -11.14498 -11.06846 -10.94771 -10.79233 -10.64556 -10.25489 -10.05563 -9.86347 -9.59237 -9.52796 -9.32088 -8.98583 -8.80470 -8.68798 -8.58615 -8.45204 -6.19502 -4.23075 1.30972 1.46818 3.04303 3.10481 3.25812 3.31062 3.34400 3.36266 3.70630 3.83335 4.34461 4.58140 4.74017 4.79995 4.91004 4.98755 5.13797 5.18735 5.23844 5.26363 5.50158 5.53036 5.65108 5.68158 5.77821 5.89731 6.03145 6.07545 6.15668 6.16813 6.23957 6.40156 6.48150 6.56977 6.58263 6.65643 6.82468 6.83133 6.95472 6.98977 7.05026 7.12534 7.23684 7.59741 7.70302 7.91043 8.06882 8.16437 8.68277 8.76156 8.94605 9.41421 10.89386 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.003117 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.878122 B = 8981.918289 C = 9240.806163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.221 3.779 4 H 0.052 0.948 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.907 3.093 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.357 6.357 14 C 0.458 3.542 15 O -0.522 6.522 16 C -0.143 4.143 17 C 0.228 3.772 18 H 0.105 0.895 19 N -0.727 5.727 20 C 0.707 3.293 21 N -0.870 5.870 22 O -0.587 6.587 23 C -0.095 4.095 24 C -0.067 4.067 25 C -0.133 4.133 26 C -0.115 4.115 27 C -0.132 4.132 28 C -0.071 4.071 29 C -0.118 4.118 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.266 0.734 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.402 0.598 39 H 0.395 0.605 40 H 0.412 0.588 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.396 10.047 9.301 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.734 3.266 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.273 6.273 14 C 0.302 3.698 15 O -0.413 6.413 16 C -0.181 4.181 17 C 0.122 3.878 18 H 0.123 0.877 19 N -0.382 5.382 20 C 0.405 3.595 21 N -0.437 5.437 22 O -0.465 6.465 23 C -0.096 4.096 24 C -0.085 4.085 25 C -0.151 4.151 26 C -0.133 4.133 27 C -0.150 4.150 28 C -0.072 4.072 29 C -0.175 4.175 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.236 0.764 39 H 0.222 0.778 40 H 0.243 0.757 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.094 9.852 9.714 20.476 hybrid contribution 0.794 0.111 -0.962 1.253 sum -14.300 9.964 8.751 19.503 Atomic orbital electron populations 1.21852 0.98128 0.99054 1.00894 1.21915 0.92919 0.99512 1.02298 1.20616 0.94560 0.88247 0.79713 0.93020 1.21022 0.89615 1.43021 1.02477 0.91410 1.24886 0.99123 0.95146 0.94611 1.69977 1.35968 1.43615 1.02862 0.86368 0.84151 0.78893 0.77229 1.20234 1.21088 1.19663 1.86476 1.34277 1.62118 1.44405 1.23127 0.80713 0.76596 0.89377 1.90540 1.57318 1.59181 1.34229 1.21987 0.98818 1.01294 0.96023 1.19272 0.95040 0.87922 0.85563 0.87702 1.44998 1.56526 1.19154 1.17538 1.16002 0.79517 0.80171 0.83766 1.42998 1.58247 1.21170 1.21328 1.90918 1.49589 1.81179 1.24803 1.19764 0.93116 1.01444 0.95274 1.21161 0.99669 0.95767 0.91915 1.21115 0.95418 1.00261 0.98271 1.21091 0.94076 0.99909 0.98248 1.20893 0.99448 1.01446 0.93247 1.19688 0.93608 0.98270 0.95603 1.20858 0.98533 1.02027 0.96092 0.94829 0.94739 0.92650 0.89223 0.93709 0.92470 0.87652 0.85969 0.76351 0.77767 0.75664 0.85290 0.86315 0.86555 0.86521 0.91066 0.91806 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.54 37.16 0.32 -2.65 16 2 C -0.13 -3.11 5.53 -26.73 -0.15 -3.26 16 3 C 0.22 5.84 2.13 -27.88 -0.06 5.78 16 4 H 0.05 1.52 7.12 -51.93 -0.37 1.15 16 5 C -0.52 -14.79 8.82 -34.44 -0.30 -15.09 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 7 C 0.06 1.79 5.20 -17.82 -0.09 1.70 16 8 N -0.89 -25.20 12.07 55.43 0.67 -24.53 16 9 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 O -0.36 -8.50 9.79 -39.25 -0.38 -8.88 16 14 C 0.46 9.22 6.21 36.00 0.22 9.44 16 15 O -0.52 -10.89 12.50 -18.75 -0.23 -11.12 16 16 C -0.14 -2.23 3.95 -27.89 -0.11 -2.34 16 17 C 0.23 3.01 1.54 -69.08 -0.11 2.91 16 18 H 0.11 1.31 7.36 -51.93 -0.38 0.93 16 19 N -0.73 -9.22 3.48 -59.81 -0.21 -9.43 16 20 C 0.71 9.90 8.23 -86.91 -0.72 9.18 16 21 N -0.87 -8.81 8.88 27.63 0.25 -8.57 16 22 O -0.59 -10.05 13.17 5.29 0.07 -9.98 16 23 C -0.09 -1.21 4.37 -104.63 -0.46 -1.67 16 24 C -0.07 -0.88 7.42 -39.58 -0.29 -1.17 16 25 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 26 C -0.11 -1.22 10.05 -39.59 -0.40 -1.62 16 27 C -0.13 -1.40 9.70 -39.59 -0.38 -1.78 16 28 C -0.07 -0.81 5.88 -104.62 -0.62 -1.42 16 29 C -0.12 -1.06 9.32 36.01 0.34 -0.72 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.68 6.09 -51.93 -0.32 0.37 16 32 H 0.05 1.21 7.70 -51.93 -0.40 0.81 16 33 H 0.09 2.35 6.76 -51.93 -0.35 2.00 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.11 1.43 7.92 -51.93 -0.41 1.02 16 37 H 0.12 2.07 5.35 -51.93 -0.28 1.79 16 38 H 0.40 4.43 8.65 -40.82 -0.35 4.08 16 39 H 0.39 2.92 8.85 -40.82 -0.36 2.56 16 40 H 0.41 3.75 8.93 -40.82 -0.36 3.39 16 41 H 0.13 1.75 5.99 -52.48 -0.31 1.44 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 47 H 0.07 0.62 6.01 -51.93 -0.31 0.31 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -33.19 377.24 -9.10 -42.29 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -6.71 Total: 13.00 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.21 Total: -4.66 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.71 Total: -42.52 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.55 Total: -29.98 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.19 -9.10 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187959346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.470 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds