Wall clock time and date at job start Tue Mar 31 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47290 * 2 1 4 4 H 1.09005 * 109.47398 * 303.29833 * 3 2 1 5 5 C 1.50702 * 109.47673 * 183.29919 * 3 2 1 6 6 H 1.07997 * 119.99839 * 245.34627 * 5 3 2 7 7 C 1.37881 * 119.99900 * 65.34026 * 5 3 2 8 8 N 1.31518 * 119.99665 * 7.92828 * 7 5 3 9 9 Si 1.86800 * 119.99957 * 187.93050 * 7 5 3 10 10 H 1.48494 * 109.47191 * 84.99421 * 9 7 5 11 11 H 1.48501 * 109.46844 * 204.99386 * 9 7 5 12 12 H 1.48502 * 109.47011 * 324.98983 * 9 7 5 13 13 O 1.45203 * 109.47260 * 63.29452 * 3 2 1 14 14 C 1.34228 * 117.00499 * 270.00300 * 13 3 2 15 15 O 1.20827 * 119.99765 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00451 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47639 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.47152 * 54.99395 * 17 16 14 19 19 N 1.46509 * 109.46603 * 294.99636 * 17 16 14 20 20 C 1.34777 * 119.99840 * 294.80190 * 19 17 16 21 21 N 1.34780 * 119.99624 * 184.73650 * 20 19 17 22 22 O 1.21581 * 120.00311 * 4.73869 * 20 19 17 23 23 C 1.50700 * 109.47603 * 174.99856 * 17 16 14 24 24 C 1.38258 * 119.99761 * 15.11513 * 23 17 16 25 25 C 1.38216 * 119.99725 * 179.76909 * 24 23 17 26 26 C 1.38252 * 119.99768 * 0.50523 * 25 24 23 27 27 C 1.38209 * 120.00208 * 359.75094 * 26 25 24 28 28 C 1.38207 * 120.00192 * 195.38883 * 23 17 16 29 29 C 1.50708 * 119.99839 * 0.02562 * 28 23 17 30 30 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47049 * 300.00391 * 1 2 3 32 32 H 1.09002 * 109.46792 * 60.00140 * 1 2 3 33 33 H 1.08998 * 109.47384 * 240.00038 * 2 1 3 34 34 H 1.08999 * 109.47184 * 119.99536 * 2 1 3 35 35 H 0.97002 * 119.99746 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.46984 * 299.99741 * 16 14 13 37 37 H 1.09004 * 109.47492 * 59.99502 * 16 14 13 38 38 H 0.97004 * 119.99903 * 114.80172 * 19 17 16 39 39 H 0.96994 * 119.99915 * 359.97438 * 21 20 19 40 40 H 0.97005 * 119.99273 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.00354 * 359.97438 * 24 23 17 42 42 H 1.07995 * 119.99709 * 180.22765 * 25 24 23 43 43 H 1.08006 * 119.99428 * 179.72123 * 26 25 24 44 44 H 1.08007 * 119.99926 * 179.97438 * 27 26 25 45 45 H 1.08993 * 109.47170 * 89.99818 * 29 28 23 46 46 H 1.08997 * 109.46522 * 210.00028 * 29 28 23 47 47 H 1.09001 * 109.46836 * 329.99847 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6292 1.9732 -0.8590 5 6 3.5448 1.4434 -0.0818 6 1 4.1303 1.8174 0.7451 7 6 4.1741 0.9665 -1.2121 8 7 3.4672 0.6570 -2.2771 9 14 6.0305 0.7599 -1.2308 10 1 6.3877 -0.5586 -0.6485 11 1 6.5226 0.8328 -2.6300 12 1 6.6570 1.8413 -0.4288 13 8 1.6213 2.1039 1.2229 14 6 0.4383 2.7376 1.1988 15 8 -0.2252 2.7400 0.1891 16 6 -0.0617 3.4471 2.4307 17 6 -1.4229 4.0810 2.1371 18 1 -2.1072 3.3174 1.7674 19 7 -1.2658 5.1277 1.1240 20 6 -0.5450 6.2320 1.4022 21 7 -0.4792 7.2370 0.5066 22 8 0.0458 6.3216 2.4610 23 6 -1.9791 4.6847 3.4009 24 6 -1.1538 4.8879 4.4913 25 6 -1.6629 5.4460 5.6488 26 6 -2.9997 5.7914 5.7197 27 6 -3.8259 5.5833 4.6314 28 6 -3.3155 5.0300 3.4718 29 6 -4.2166 4.8022 2.2855 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9099 0.3219 -3.0725 36 1 -0.1632 2.7311 3.2463 37 1 0.6476 4.2243 2.7156 38 1 -1.6805 5.0258 0.2530 39 1 -0.9502 7.1654 -0.3383 40 1 0.0393 8.0320 0.7071 41 1 -0.1105 4.6137 4.4376 42 1 -1.0174 5.6082 6.4992 43 1 -3.3984 6.2233 6.6258 44 1 -4.8703 5.8527 4.6870 45 1 -4.6580 3.8077 2.3501 46 1 -5.0082 5.5515 2.2815 47 1 -3.6353 4.8827 1.3670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187959346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:59 Heat of formation + Delta-G solvation = -124.862137 kcal Electronic energy + Delta-G solvation = -29980.340984 eV Core-core repulsion = 25933.898732 eV Total energy + Delta-G solvation = -4046.442252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89048 -40.88819 -39.83221 -37.75228 -36.16383 -35.43141 -34.73269 -33.62351 -33.41588 -32.24102 -30.64939 -29.21644 -27.73932 -26.08056 -25.08129 -23.19003 -22.72635 -22.08877 -21.27965 -20.67897 -19.54112 -18.84723 -18.46591 -18.29550 -17.30863 -17.22643 -16.86026 -16.41468 -16.01869 -15.98348 -15.87275 -15.46535 -15.20720 -14.82156 -14.69266 -14.36355 -14.23365 -13.88276 -13.81848 -13.42622 -13.32503 -13.21703 -13.08879 -13.02192 -12.82156 -12.76890 -12.73311 -12.50775 -12.16306 -11.91532 -11.77543 -11.70262 -11.43454 -11.23945 -11.09281 -10.80847 -10.57807 -10.54082 -10.01190 -9.57580 -9.43423 -8.31061 -6.43967 0.44274 0.60327 1.39172 1.41103 1.46008 1.51614 2.03967 2.10746 2.27818 2.41961 2.96249 3.00085 3.61328 3.71739 3.80359 4.01368 4.10453 4.15922 4.29440 4.35465 4.38180 4.39775 4.46310 4.51466 4.60165 4.70457 4.79006 4.86352 4.87573 4.94386 5.02566 5.10463 5.21231 5.23038 5.37180 5.38583 5.52277 5.52746 5.62851 5.64623 5.71204 5.78649 5.92647 5.95789 6.09211 6.18076 6.21022 6.61248 7.05742 7.13553 7.28282 7.74421 8.77846 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.003117 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.878122 B = 8981.918289 C = 9240.806163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.227 3.773 4 H 0.014 0.986 5 C -0.555 4.555 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.973 3.027 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.269 1.269 13 O -0.372 6.372 14 C 0.453 3.547 15 O -0.529 6.529 16 C -0.130 4.130 17 C 0.233 3.767 18 H 0.114 0.886 19 N -0.722 5.722 20 C 0.697 3.303 21 N -0.855 5.855 22 O -0.621 6.621 23 C -0.107 4.107 24 C -0.087 4.087 25 C -0.145 4.145 26 C -0.116 4.116 27 C -0.136 4.136 28 C -0.077 4.077 29 C -0.118 4.118 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.270 0.730 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.410 0.590 39 H 0.409 0.591 40 H 0.418 0.582 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.700 10.304 9.942 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.031 0.969 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.797 3.203 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.194 1.194 13 O -0.289 6.289 14 C 0.297 3.703 15 O -0.420 6.420 16 C -0.168 4.168 17 C 0.127 3.873 18 H 0.132 0.868 19 N -0.378 5.378 20 C 0.395 3.605 21 N -0.424 5.424 22 O -0.502 6.502 23 C -0.108 4.108 24 C -0.106 4.106 25 C -0.163 4.163 26 C -0.134 4.134 27 C -0.154 4.154 28 C -0.077 4.077 29 C -0.174 4.174 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.246 0.754 39 H 0.239 0.761 40 H 0.250 0.750 41 H 0.132 0.868 42 H 0.148 0.852 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.436 10.128 10.321 21.892 hybrid contribution 1.136 0.110 -1.159 1.627 sum -15.300 10.238 9.162 20.563 Atomic orbital electron populations 1.21704 0.95499 1.00844 1.00545 1.21760 0.95227 0.97813 1.01224 1.20301 0.93816 0.89085 0.79434 0.96853 1.21309 0.90857 1.44213 1.02840 0.92309 1.25735 1.03916 0.94259 0.93911 1.70078 1.37933 1.43626 1.03342 0.85342 0.78198 0.79178 0.77607 1.19064 1.20144 1.19407 1.86469 1.36387 1.62941 1.43127 1.23974 0.79490 0.76052 0.90744 1.90525 1.57169 1.59297 1.34979 1.22042 0.99763 1.00828 0.94171 1.19244 0.93488 0.88203 0.86360 0.86784 1.44954 1.56245 1.18746 1.17840 1.16277 0.79477 0.80906 0.83858 1.42854 1.57821 1.20408 1.21289 1.90897 1.50990 1.81915 1.26397 1.19706 0.93921 1.02486 0.94642 1.21174 0.99240 0.97118 0.93026 1.21333 0.96444 1.00328 0.98228 1.21428 0.93535 0.99117 0.99322 1.21248 1.00712 1.00632 0.92770 1.19970 0.93222 0.97760 0.96790 1.20898 0.98492 1.03101 0.94914 0.91930 0.93935 0.94025 0.91521 0.93349 0.92063 0.85714 0.87245 0.75432 0.76059 0.74971 0.86768 0.85202 0.84058 0.84029 0.90097 0.90257 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.54 71.98 0.62 -4.70 16 2 C -0.12 -6.01 5.53 30.59 0.17 -5.84 16 3 C 0.23 12.36 2.13 29.85 0.06 12.42 16 4 H 0.01 0.83 7.12 -2.38 -0.02 0.81 16 5 C -0.55 -32.16 8.82 25.60 0.23 -31.94 16 6 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 7 C 0.02 1.24 5.20 84.66 0.44 1.68 16 8 N -0.91 -52.66 12.07 21.45 0.26 -52.40 16 9 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 O -0.37 -18.23 9.79 -51.39 -0.50 -18.73 16 14 C 0.45 18.49 6.21 71.23 0.44 18.93 16 15 O -0.53 -22.32 12.50 21.96 0.27 -22.05 16 16 C -0.13 -4.08 3.95 29.85 0.12 -3.97 16 17 C 0.23 6.06 1.54 44.24 0.07 6.12 16 18 H 0.11 2.73 7.36 -2.39 -0.02 2.71 16 19 N -0.72 -18.02 3.48 -461.40 -1.61 -19.63 16 20 C 0.70 19.40 8.23 179.05 1.47 20.88 16 21 N -0.85 -16.75 8.88 -184.75 -1.64 -18.39 16 22 O -0.62 -21.60 13.17 -3.97 -0.05 -21.65 16 23 C -0.11 -2.64 4.37 -19.87 -0.09 -2.73 16 24 C -0.09 -2.29 7.42 22.27 0.17 -2.13 16 25 C -0.15 -3.29 10.05 22.27 0.22 -3.06 16 26 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 27 C -0.14 -2.53 9.70 22.27 0.22 -2.31 16 28 C -0.08 -1.60 5.88 -19.87 -0.12 -1.72 16 29 C -0.12 -1.83 9.32 71.24 0.66 -1.16 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.66 6.09 -2.39 -0.01 1.64 16 32 H 0.04 1.81 7.70 -2.39 -0.02 1.79 16 33 H 0.07 3.57 6.76 -2.39 -0.02 3.55 16 34 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.12 3.39 7.92 -2.38 -0.02 3.37 16 37 H 0.11 3.84 5.35 -2.38 -0.01 3.83 16 38 H 0.41 8.74 8.65 -92.71 -0.80 7.94 16 39 H 0.41 5.60 8.85 -92.71 -0.82 4.78 16 40 H 0.42 7.34 8.93 -92.70 -0.83 6.51 16 41 H 0.11 3.24 5.99 -2.91 -0.02 3.22 16 42 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 44 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 47 H 0.07 1.07 6.01 -2.39 -0.01 1.05 16 Total: -1.00 -72.87 377.24 2.25 -70.63 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -1.42 Total: 38.09 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.91 Total: -1.51 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.99 Total: -90.42 kcal Atomic # 8 Polarization: -62.15 SS G_CDS: -0.28 Total: -62.43 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.87 2.25 -70.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187959346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.236 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds