Wall clock time and date at job start Tue Mar 31 2020 18:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 H 1.08996 * 109.47487 * 55.00032 * 3 2 1 5 5 C 1.50696 * 109.46935 * 175.00207 * 3 2 1 6 6 H 1.08006 * 120.00442 * 119.99510 * 5 3 2 7 7 C 1.37876 * 120.00259 * 299.99386 * 5 3 2 8 8 N 1.31515 * 119.99653 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00475 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47068 * 60.00054 * 9 7 5 11 11 H 1.48500 * 109.47178 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47063 * 300.00049 * 9 7 5 13 13 O 1.45199 * 109.46920 * 294.99613 * 3 2 1 14 14 C 1.34232 * 116.99769 * 90.00113 * 13 3 2 15 15 O 1.20826 * 120.00110 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00035 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47504 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.46891 * 305.00399 * 17 16 14 19 19 N 1.46503 * 109.46966 * 64.99639 * 17 16 14 20 20 C 1.34777 * 119.99868 * 63.07325 * 19 17 16 21 21 N 1.34779 * 119.99931 * 185.06113 * 20 19 17 22 22 O 1.21584 * 120.00006 * 5.05609 * 20 19 17 23 23 C 1.50699 * 109.47756 * 185.00033 * 17 16 14 24 24 C 1.38260 * 119.99448 * 345.98294 * 23 17 16 25 25 C 1.38213 * 119.99514 * 179.97438 * 24 23 17 26 26 C 1.38256 * 120.00317 * 359.97438 * 25 24 23 27 27 C 1.38214 * 119.99547 * 359.74400 * 26 25 24 28 28 C 1.38205 * 120.00421 * 165.96154 * 23 17 16 29 29 C 1.50705 * 119.99811 * 0.02562 * 28 23 17 30 30 H 1.08993 * 109.47271 * 59.99745 * 1 2 3 31 31 H 1.09001 * 109.47603 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46888 * 299.99924 * 1 2 3 33 33 H 1.08994 * 109.46813 * 239.99469 * 2 1 3 34 34 H 1.09003 * 109.46861 * 119.99622 * 2 1 3 35 35 H 0.96999 * 119.99963 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47300 * 60.00234 * 16 14 13 37 37 H 1.09001 * 109.47062 * 300.00042 * 16 14 13 38 38 H 0.97006 * 120.00111 * 243.06800 * 19 17 16 39 39 H 0.96999 * 120.00035 * 359.97438 * 21 20 19 40 40 H 0.96999 * 120.00220 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.00247 * 359.97438 * 24 23 17 42 42 H 1.08000 * 119.99827 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00036 * 179.97438 * 26 25 24 44 44 H 1.08011 * 119.99662 * 180.27268 * 27 26 25 45 45 H 1.08996 * 109.47111 * 90.00138 * 29 28 23 46 46 H 1.09001 * 109.47218 * 330.00249 * 29 28 23 47 47 H 1.08996 * 109.47048 * 209.99806 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8811 1.3817 10 1 6.4995 2.2813 1.3820 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1470 0.2349 13 8 1.6560 2.0916 -1.2407 14 6 0.4728 2.7253 -1.2560 15 8 -0.2188 2.7377 -0.2654 16 6 0.0070 3.4215 -2.5088 17 6 -1.3611 4.0593 -2.2593 18 1 -2.0558 3.3002 -1.9000 19 7 -1.2308 5.1169 -1.2539 20 6 -0.4670 6.1979 -1.5080 21 7 -0.2644 7.1209 -0.5470 22 8 0.0394 6.3403 -2.6042 23 6 -1.8823 4.6494 -3.5443 24 6 -1.0325 4.8190 -4.6217 25 6 -1.5106 5.3597 -5.8004 26 6 -2.8387 5.7303 -5.9024 27 6 -3.6894 5.5553 -4.8272 28 6 -3.2097 5.0205 -3.6460 29 6 -4.1359 4.8356 -2.4716 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8293 -0.0617 2.9495 36 1 -0.0720 2.6968 -3.3192 37 1 0.7240 4.1956 -2.7823 38 1 -1.6942 5.0392 -0.4053 39 1 -0.6686 7.0074 0.3274 40 1 0.2856 7.8987 -0.7298 41 1 0.0048 4.5291 -4.5422 42 1 -0.8468 5.4926 -6.6419 43 1 -3.2121 6.1532 -6.8233 44 1 -4.7279 5.8408 -4.9083 45 1 -4.1216 5.7329 -1.8529 46 1 -3.8067 3.9812 -1.8803 47 1 -5.1492 4.6592 -2.8323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187959377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:02 Heat of formation + Delta-G solvation = -102.841822 kcal Electronic energy + Delta-G solvation = -29988.928526 eV Core-core repulsion = 25943.441146 eV Total energy + Delta-G solvation = -4045.487379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69518 -39.33847 -38.87796 -36.11253 -34.93036 -33.68597 -33.48138 -32.75889 -31.42958 -31.21716 -29.47267 -27.30745 -26.86514 -24.92326 -23.20716 -22.00428 -21.64719 -20.70082 -19.83254 -19.24699 -18.46359 -17.43829 -16.98324 -16.64154 -16.13499 -15.78341 -15.44807 -14.96800 -14.94055 -14.79715 -14.49356 -14.35967 -14.06263 -13.59180 -13.18028 -13.01531 -12.92669 -12.79332 -12.51318 -12.37708 -12.01148 -11.89361 -11.63093 -11.40234 -11.26588 -11.15205 -11.00293 -10.92849 -10.76875 -10.65174 -10.28493 -10.09812 -9.79516 -9.58912 -9.52967 -9.33585 -8.99725 -8.79724 -8.64615 -8.55940 -8.44953 -6.18695 -4.25370 1.34582 1.49159 3.03906 3.07976 3.26101 3.29473 3.32108 3.37220 3.68448 3.86305 4.32940 4.58990 4.75157 4.79836 4.91689 4.97463 5.13043 5.15381 5.19813 5.31277 5.52883 5.54340 5.64544 5.69386 5.78061 5.89844 6.00405 6.07518 6.17281 6.21797 6.28380 6.45164 6.50177 6.57297 6.59803 6.66695 6.83417 6.86966 6.95984 7.00005 7.07276 7.16286 7.28001 7.62330 7.74508 7.96454 8.07395 8.17304 8.66161 8.76439 8.91804 9.39998 10.87922 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.003123 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.250462 B = 8963.925188 C = 9253.691928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.357 6.357 14 C 0.458 3.542 15 O -0.521 6.521 16 C -0.142 4.142 17 C 0.227 3.773 18 H 0.107 0.893 19 N -0.726 5.726 20 C 0.706 3.294 21 N -0.870 5.870 22 O -0.587 6.587 23 C -0.091 4.091 24 C -0.066 4.066 25 C -0.132 4.132 26 C -0.116 4.116 27 C -0.132 4.132 28 C -0.072 4.072 29 C -0.115 4.115 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.266 0.734 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.401 0.599 39 H 0.395 0.605 40 H 0.412 0.588 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 10.301 -9.160 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.063 0.937 5 C -0.560 4.560 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.273 6.273 14 C 0.301 3.699 15 O -0.412 6.412 16 C -0.180 4.180 17 C 0.121 3.879 18 H 0.124 0.876 19 N -0.381 5.381 20 C 0.405 3.595 21 N -0.437 5.437 22 O -0.465 6.465 23 C -0.092 4.092 24 C -0.084 4.084 25 C -0.150 4.150 26 C -0.134 4.134 27 C -0.150 4.150 28 C -0.073 4.073 29 C -0.172 4.172 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.236 0.764 39 H 0.223 0.777 40 H 0.243 0.757 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.294 10.116 -9.616 19.978 hybrid contribution 0.814 0.236 1.010 1.319 sum -13.480 10.352 -8.606 19.051 Atomic orbital electron populations 1.21841 0.98373 0.98915 1.00653 1.22016 0.92647 0.99441 1.03312 1.20611 0.94870 0.88683 0.78730 0.93658 1.21033 0.89873 1.38878 1.06181 0.91471 1.24870 0.99174 0.94768 0.95072 1.69879 1.35415 1.37885 1.09501 0.86359 0.83995 0.78491 0.77464 1.20016 1.21043 1.19914 1.86482 1.34394 1.62396 1.44005 1.23121 0.80783 0.76550 0.89448 1.90543 1.55699 1.58903 1.36020 1.21963 0.98871 1.01322 0.95864 1.19279 0.95203 0.87774 0.85643 0.87564 1.44958 1.52615 1.20434 1.20109 1.16019 0.79393 0.79882 0.84256 1.43010 1.58284 1.27052 1.15395 1.90938 1.54869 1.78284 1.22410 1.19742 0.93151 1.01179 0.95117 1.21108 0.99403 0.95984 0.91953 1.21098 0.95600 1.00286 0.98046 1.21078 0.94004 0.99944 0.98374 1.20884 0.99460 1.01475 0.93174 1.19660 0.93735 0.98415 0.95457 1.20821 0.98017 1.02267 0.96080 0.94940 0.94917 0.92876 0.94038 0.87417 0.92392 0.87485 0.86361 0.76442 0.77718 0.75679 0.85473 0.86371 0.86599 0.86567 0.91382 0.91252 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.88 2.25 -27.89 -0.06 5.82 16 4 H 0.05 1.31 7.16 -51.93 -0.37 0.94 16 5 C -0.52 -14.66 8.90 -34.44 -0.31 -14.96 16 6 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.92 11.29 55.43 0.63 -24.30 16 9 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.36 -8.45 9.81 -39.26 -0.39 -8.84 16 14 C 0.46 9.11 6.28 36.00 0.23 9.34 16 15 O -0.52 -10.74 12.50 -18.75 -0.23 -10.98 16 16 C -0.14 -2.19 3.92 -27.88 -0.11 -2.30 16 17 C 0.23 2.99 1.68 -69.08 -0.12 2.87 16 18 H 0.11 1.32 6.54 -51.93 -0.34 0.98 16 19 N -0.73 -9.13 4.23 -59.81 -0.25 -9.38 16 20 C 0.71 9.85 8.21 -86.92 -0.71 9.13 16 21 N -0.87 -8.95 8.88 27.63 0.25 -8.70 16 22 O -0.59 -9.97 13.28 5.29 0.07 -9.90 16 23 C -0.09 -1.17 4.31 -104.63 -0.45 -1.62 16 24 C -0.07 -0.87 7.37 -39.58 -0.29 -1.17 16 25 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.13 -1.42 9.70 -39.59 -0.38 -1.80 16 28 C -0.07 -0.83 5.88 -104.63 -0.62 -1.44 16 29 C -0.12 -1.04 9.46 36.01 0.34 -0.70 16 30 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.17 7.80 -51.93 -0.40 0.76 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.11 2.88 5.95 -51.93 -0.31 2.57 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 36 H 0.11 1.45 7.87 -51.93 -0.41 1.04 16 37 H 0.12 1.97 5.54 -51.93 -0.29 1.69 16 38 H 0.40 4.35 8.85 -40.82 -0.36 3.99 16 39 H 0.40 3.06 8.85 -40.82 -0.36 2.70 16 40 H 0.41 3.81 8.93 -40.82 -0.36 3.44 16 41 H 0.13 1.72 6.04 -52.49 -0.32 1.40 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.62 6.26 -51.93 -0.33 0.29 16 47 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -32.79 376.88 -9.14 -41.93 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -6.67 Total: 13.36 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.20 Total: -4.97 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.62 Total: -42.38 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.55 Total: -29.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.79 -9.14 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187959377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.913 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds