Wall clock time and date at job start Tue Mar 31 2020 18:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 H 1.08996 * 109.47487 * 55.00032 * 3 2 1 5 5 C 1.50696 * 109.46935 * 175.00207 * 3 2 1 6 6 H 1.08006 * 120.00442 * 119.99510 * 5 3 2 7 7 C 1.37876 * 120.00259 * 299.99386 * 5 3 2 8 8 N 1.31515 * 119.99653 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00475 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47068 * 60.00054 * 9 7 5 11 11 H 1.48500 * 109.47178 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47063 * 300.00049 * 9 7 5 13 13 O 1.45199 * 109.46920 * 294.99613 * 3 2 1 14 14 C 1.34232 * 116.99769 * 90.00113 * 13 3 2 15 15 O 1.20826 * 120.00110 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00035 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47504 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.46891 * 305.00399 * 17 16 14 19 19 N 1.46503 * 109.46966 * 64.99639 * 17 16 14 20 20 C 1.34777 * 119.99868 * 63.07325 * 19 17 16 21 21 N 1.34779 * 119.99931 * 185.06113 * 20 19 17 22 22 O 1.21584 * 120.00006 * 5.05609 * 20 19 17 23 23 C 1.50699 * 109.47756 * 185.00033 * 17 16 14 24 24 C 1.38260 * 119.99448 * 345.98294 * 23 17 16 25 25 C 1.38213 * 119.99514 * 179.97438 * 24 23 17 26 26 C 1.38256 * 120.00317 * 359.97438 * 25 24 23 27 27 C 1.38214 * 119.99547 * 359.74400 * 26 25 24 28 28 C 1.38205 * 120.00421 * 165.96154 * 23 17 16 29 29 C 1.50705 * 119.99811 * 0.02562 * 28 23 17 30 30 H 1.08993 * 109.47271 * 59.99745 * 1 2 3 31 31 H 1.09001 * 109.47603 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46888 * 299.99924 * 1 2 3 33 33 H 1.08994 * 109.46813 * 239.99469 * 2 1 3 34 34 H 1.09003 * 109.46861 * 119.99622 * 2 1 3 35 35 H 0.96999 * 119.99963 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47300 * 60.00234 * 16 14 13 37 37 H 1.09001 * 109.47062 * 300.00042 * 16 14 13 38 38 H 0.97006 * 120.00111 * 243.06800 * 19 17 16 39 39 H 0.96999 * 120.00035 * 359.97438 * 21 20 19 40 40 H 0.96999 * 120.00220 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.00247 * 359.97438 * 24 23 17 42 42 H 1.08000 * 119.99827 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00036 * 179.97438 * 26 25 24 44 44 H 1.08011 * 119.99662 * 180.27268 * 27 26 25 45 45 H 1.08996 * 109.47111 * 90.00138 * 29 28 23 46 46 H 1.09001 * 109.47218 * 330.00249 * 29 28 23 47 47 H 1.08996 * 109.47048 * 209.99806 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8811 1.3817 10 1 6.4995 2.2813 1.3820 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1470 0.2349 13 8 1.6560 2.0916 -1.2407 14 6 0.4728 2.7253 -1.2560 15 8 -0.2188 2.7377 -0.2654 16 6 0.0070 3.4215 -2.5088 17 6 -1.3611 4.0593 -2.2593 18 1 -2.0558 3.3002 -1.9000 19 7 -1.2308 5.1169 -1.2539 20 6 -0.4670 6.1979 -1.5080 21 7 -0.2644 7.1209 -0.5470 22 8 0.0394 6.3403 -2.6042 23 6 -1.8823 4.6494 -3.5443 24 6 -1.0325 4.8190 -4.6217 25 6 -1.5106 5.3597 -5.8004 26 6 -2.8387 5.7303 -5.9024 27 6 -3.6894 5.5553 -4.8272 28 6 -3.2097 5.0205 -3.6460 29 6 -4.1359 4.8356 -2.4716 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8293 -0.0617 2.9495 36 1 -0.0720 2.6968 -3.3192 37 1 0.7240 4.1956 -2.7823 38 1 -1.6942 5.0392 -0.4053 39 1 -0.6686 7.0074 0.3274 40 1 0.2856 7.8987 -0.7298 41 1 0.0048 4.5291 -4.5422 42 1 -0.8468 5.4926 -6.6419 43 1 -3.2121 6.1532 -6.8233 44 1 -4.7279 5.8408 -4.9083 45 1 -4.1216 5.7329 -1.8529 46 1 -3.8067 3.9812 -1.8803 47 1 -5.1492 4.6592 -2.8323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187959377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:01 Heat of formation + Delta-G solvation = -123.787815 kcal Electronic energy + Delta-G solvation = -29989.836812 eV Core-core repulsion = 25943.441146 eV Total energy + Delta-G solvation = -4046.395666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.88234 -40.87943 -39.82815 -37.76116 -36.15805 -35.48263 -34.71454 -33.61490 -33.33117 -32.24335 -30.64657 -29.21237 -27.73037 -26.09478 -25.08853 -23.17593 -22.71970 -22.06267 -21.26599 -20.65613 -19.52449 -18.84187 -18.48377 -18.29518 -17.33152 -17.23904 -16.86510 -16.41577 -16.12394 -15.90228 -15.80502 -15.47879 -15.18746 -14.78835 -14.71560 -14.35653 -14.21050 -13.91252 -13.82706 -13.34937 -13.32140 -13.23281 -13.12951 -13.01230 -12.81952 -12.79685 -12.66691 -12.51897 -12.15837 -11.85380 -11.73154 -11.68754 -11.41742 -11.25379 -11.11839 -10.80459 -10.57264 -10.51217 -10.02147 -9.54189 -9.42360 -8.28091 -6.44304 0.46841 0.61524 1.39643 1.42625 1.45035 1.51037 2.03159 2.09085 2.30287 2.42152 2.98057 3.01132 3.59912 3.72903 3.79844 4.00635 4.11285 4.12186 4.29026 4.35013 4.40384 4.43519 4.44763 4.53252 4.62833 4.69488 4.79658 4.86839 4.87563 4.94307 5.01801 5.12751 5.22266 5.25087 5.38009 5.42761 5.51616 5.52796 5.65775 5.69701 5.72147 5.79097 5.96039 6.00893 6.09803 6.18154 6.22310 6.60144 7.05121 7.14118 7.28441 7.74839 8.77962 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.003123 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.250462 B = 8963.925188 C = 9253.691928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.131 4.131 3 C 0.229 3.771 4 H 0.010 0.990 5 C -0.554 4.554 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.975 3.025 10 H -0.271 1.271 11 H -0.274 1.274 12 H -0.266 1.266 13 O -0.372 6.372 14 C 0.452 3.548 15 O -0.527 6.527 16 C -0.128 4.128 17 C 0.232 3.768 18 H 0.116 0.884 19 N -0.721 5.721 20 C 0.696 3.304 21 N -0.856 5.856 22 O -0.620 6.620 23 C -0.102 4.102 24 C -0.086 4.086 25 C -0.145 4.145 26 C -0.118 4.118 27 C -0.136 4.136 28 C -0.079 4.079 29 C -0.113 4.113 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.271 0.729 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.410 0.590 39 H 0.409 0.591 40 H 0.418 0.582 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.718 10.672 -9.687 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.169 4.169 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.799 3.201 10 H -0.196 1.196 11 H -0.199 1.199 12 H -0.191 1.191 13 O -0.289 6.289 14 C 0.297 3.703 15 O -0.418 6.418 16 C -0.167 4.167 17 C 0.126 3.874 18 H 0.134 0.866 19 N -0.376 5.376 20 C 0.394 3.606 21 N -0.425 5.425 22 O -0.501 6.501 23 C -0.103 4.103 24 C -0.105 4.105 25 C -0.163 4.163 26 C -0.136 4.136 27 C -0.154 4.154 28 C -0.079 4.079 29 C -0.170 4.170 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.246 0.754 39 H 0.239 0.761 40 H 0.250 0.750 41 H 0.132 0.868 42 H 0.148 0.852 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.524 10.503 -10.108 21.295 hybrid contribution 1.125 0.185 1.168 1.632 sum -14.400 10.688 -8.940 20.038 Atomic orbital electron populations 1.21690 0.95766 1.00599 1.00380 1.21863 0.94945 0.97998 1.02061 1.20288 0.94106 0.89311 0.78677 0.97196 1.21320 0.91043 1.40053 1.06788 0.92329 1.25716 1.03919 0.93880 0.94379 1.69987 1.37306 1.37780 1.09781 0.85350 0.78149 0.78687 0.77946 1.19620 1.19915 1.19114 1.86476 1.36548 1.63238 1.42671 1.23952 0.79538 0.75989 0.90838 1.90527 1.55526 1.58990 1.36743 1.22014 0.99850 1.00933 0.93888 1.19252 0.93693 0.88053 0.86413 0.86614 1.44905 1.52381 1.19961 1.20397 1.16282 0.79425 0.80499 0.84363 1.42881 1.57798 1.26414 1.15388 1.90918 1.56153 1.79083 1.23931 1.19701 0.93926 1.02180 0.94538 1.21140 0.99055 0.97283 0.93028 1.21324 0.96622 1.00360 0.98017 1.21415 0.93490 0.99189 0.99482 1.21240 1.00706 1.00717 0.92729 1.19952 0.93435 0.97914 0.96635 1.20847 0.98382 1.02435 0.95286 0.94117 0.92224 0.94106 0.94062 0.89688 0.92009 0.85614 0.87531 0.75449 0.76129 0.74995 0.86794 0.85235 0.84144 0.84119 0.90911 0.91297 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.57 71.98 0.62 -4.71 16 2 C -0.13 -6.51 5.49 30.59 0.17 -6.34 16 3 C 0.23 12.43 2.25 29.85 0.07 12.49 16 4 H 0.01 0.61 7.16 -2.39 -0.02 0.60 16 5 C -0.55 -31.94 8.90 25.60 0.23 -31.71 16 6 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -51.73 11.29 21.45 0.24 -51.49 16 9 Si 0.98 43.29 29.54 68.60 2.03 45.32 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 O -0.37 -18.09 9.81 -51.44 -0.50 -18.60 16 14 C 0.45 18.22 6.28 71.23 0.45 18.67 16 15 O -0.53 -21.89 12.50 21.96 0.27 -21.62 16 16 C -0.13 -3.99 3.92 29.85 0.12 -3.87 16 17 C 0.23 5.97 1.68 44.24 0.07 6.05 16 18 H 0.12 2.75 6.54 -2.39 -0.02 2.73 16 19 N -0.72 -17.73 4.23 -461.40 -1.95 -19.68 16 20 C 0.70 19.24 8.21 179.05 1.47 20.71 16 21 N -0.86 -17.03 8.88 -184.74 -1.64 -18.67 16 22 O -0.62 -21.29 13.28 -3.98 -0.05 -21.34 16 23 C -0.10 -2.55 4.31 -19.87 -0.09 -2.64 16 24 C -0.09 -2.29 7.37 22.27 0.16 -2.12 16 25 C -0.15 -3.33 10.05 22.27 0.22 -3.11 16 26 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 27 C -0.14 -2.60 9.70 22.27 0.22 -2.39 16 28 C -0.08 -1.67 5.88 -19.87 -0.12 -1.78 16 29 C -0.11 -1.79 9.46 71.24 0.67 -1.11 16 30 H 0.04 1.61 6.06 -2.39 -0.01 1.59 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.78 7.80 -2.39 -0.02 1.77 16 33 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 4.64 5.95 -2.39 -0.01 4.62 16 35 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.13 3.39 7.87 -2.39 -0.02 3.37 16 37 H 0.11 3.66 5.54 -2.39 -0.01 3.65 16 38 H 0.41 8.50 8.85 -92.70 -0.82 7.68 16 39 H 0.41 5.89 8.85 -92.71 -0.82 5.07 16 40 H 0.42 7.46 8.93 -92.71 -0.83 6.63 16 41 H 0.11 3.20 6.04 -2.91 -0.02 3.18 16 42 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.14 1.94 8.06 -2.90 -0.02 1.92 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.09 6.26 -2.39 -0.01 1.07 16 47 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 Total: -1.00 -71.59 376.88 1.89 -69.69 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.43 Total: 38.71 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 4.93 Total: -2.33 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -3.35 Total: -89.84 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -0.28 Total: -61.56 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.59 1.89 -69.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187959377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.095 kcal (2) G-P(sol) polarization free energy of solvation -71.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds