Wall clock time and date at job start Tue Mar 31 2020 18:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08993 * 109.47232 * 304.99861 * 3 2 1 5 5 C 1.50701 * 109.47362 * 184.99936 * 3 2 1 6 6 H 1.08001 * 120.00120 * 240.00783 * 5 3 2 7 7 C 1.37878 * 119.99995 * 59.99720 * 5 3 2 8 8 N 1.31515 * 119.99935 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00088 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47099 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47383 * 120.00105 * 9 7 5 12 12 H 1.48502 * 109.46853 * 240.00044 * 9 7 5 13 13 O 1.45200 * 109.46973 * 65.00021 * 3 2 1 14 14 C 1.34230 * 117.00215 * 269.99582 * 13 3 2 15 15 O 1.20834 * 119.99681 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00278 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47256 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.46950 * 305.00401 * 17 16 14 19 19 N 1.46498 * 109.46957 * 64.99893 * 17 16 14 20 20 C 1.34774 * 119.99910 * 64.95318 * 19 17 16 21 21 N 1.34781 * 120.00048 * 174.90635 * 20 19 17 22 22 O 1.21587 * 120.00302 * 354.90083 * 20 19 17 23 23 C 1.50694 * 109.47244 * 185.00366 * 17 16 14 24 24 C 1.38254 * 120.00003 * 345.71581 * 23 17 16 25 25 C 1.38217 * 120.00172 * 180.02562 * 24 23 17 26 26 C 1.38262 * 119.99862 * 359.97438 * 25 24 23 27 27 C 1.38214 * 119.99817 * 359.95694 * 26 25 24 28 28 C 1.38221 * 120.00004 * 165.44857 * 23 17 16 29 29 C 1.50690 * 119.99728 * 359.97438 * 28 23 17 30 30 H 1.09000 * 109.47689 * 300.00000 * 1 2 3 31 31 H 1.09000 * 109.47412 * 60.00231 * 1 2 3 32 32 H 1.09000 * 109.47450 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47228 * 239.99757 * 2 1 3 34 34 H 1.08999 * 109.47013 * 120.00124 * 2 1 3 35 35 H 0.97000 * 119.99966 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47154 * 60.00726 * 16 14 13 37 37 H 1.08998 * 109.47422 * 300.00416 * 16 14 13 38 38 H 0.96996 * 120.00081 * 244.94788 * 19 17 16 39 39 H 0.96996 * 119.99832 * 359.97438 * 21 20 19 40 40 H 0.96993 * 119.99809 * 179.72016 * 21 20 19 41 41 H 1.07998 * 120.00287 * 359.97438 * 24 23 17 42 42 H 1.07997 * 120.00088 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.99819 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99870 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47647 * 90.00218 * 29 28 23 46 46 H 1.09006 * 109.47161 * 209.99920 * 29 28 23 47 47 H 1.08998 * 109.47397 * 330.00035 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5987 1.5453 -0.1936 11 1 6.4963 -0.5190 -1.4626 12 1 6.3999 1.6157 -2.6092 13 8 1.6558 2.0916 1.2407 14 6 0.4727 2.7254 1.2560 15 8 -0.2193 2.7370 0.2655 16 6 0.0069 3.4215 2.5087 17 6 -1.3618 4.0584 2.2595 18 1 -1.3038 4.7165 1.3924 19 7 -2.3512 3.0073 2.0094 20 6 -2.6662 2.1325 2.9851 21 7 -3.6489 1.2309 2.7903 22 8 -2.0638 2.1566 4.0410 23 6 -1.7722 4.8570 3.4697 24 6 -1.1030 4.6895 4.6679 25 6 -1.4797 5.4216 5.7781 26 6 -2.5254 6.3219 5.6902 27 6 -3.1934 6.4903 4.4920 28 6 -2.8139 5.7610 3.3805 29 6 -3.5390 5.9484 2.0728 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0604 -2.9502 36 1 0.7238 4.1958 2.7822 37 1 -0.0721 2.6969 3.3191 38 1 -2.7796 2.9411 1.1417 39 1 -4.1296 1.2119 1.9480 40 1 -3.8728 0.5987 3.4909 41 1 -0.2865 3.9860 4.7366 42 1 -0.9573 5.2905 6.7141 43 1 -2.8200 6.8936 6.5578 44 1 -4.0099 7.1938 4.4233 45 1 -4.3777 5.2543 2.0196 46 1 -3.9092 6.9714 2.0059 47 1 -2.8545 5.7549 1.2469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187959406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:05 Heat of formation + Delta-G solvation = -102.921486 kcal Electronic energy + Delta-G solvation = -30092.299596 eV Core-core repulsion = 26046.808763 eV Total energy + Delta-G solvation = -4045.490834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70936 -39.32187 -38.90311 -36.10287 -34.92985 -33.72590 -33.46862 -32.77672 -31.44454 -31.20905 -29.46119 -27.31173 -26.87944 -24.92378 -23.19547 -22.02343 -21.66539 -20.69192 -19.85341 -19.24904 -18.48137 -17.46708 -16.95936 -16.65617 -16.15229 -15.63056 -15.48980 -15.02652 -14.99314 -14.89115 -14.40564 -14.36024 -14.05572 -13.59258 -13.22478 -13.03786 -13.01132 -12.71291 -12.46299 -12.32357 -12.03401 -12.02259 -11.57209 -11.39092 -11.26620 -11.13977 -11.00922 -10.94871 -10.78439 -10.63092 -10.26192 -10.06715 -9.77894 -9.61452 -9.51650 -9.32338 -9.00073 -8.77861 -8.69349 -8.59404 -8.44754 -6.18166 -4.24603 1.31178 1.46191 3.03216 3.10438 3.23647 3.30657 3.33858 3.35901 3.70719 3.83145 4.33621 4.56585 4.74337 4.78466 4.90776 4.96400 5.13980 5.15585 5.18966 5.30791 5.51275 5.53789 5.65993 5.68834 5.76878 5.92113 6.02606 6.06515 6.15422 6.22555 6.30144 6.46345 6.47598 6.56111 6.57983 6.64560 6.80729 6.89230 6.96207 6.96796 7.04525 7.17401 7.29378 7.63500 7.75539 7.97633 8.05392 8.18319 8.67720 8.74033 8.93580 9.40862 10.88609 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.003158 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.160060 B = 8865.028837 C = 9531.324847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.357 6.357 14 C 0.458 3.542 15 O -0.522 6.522 16 C -0.143 4.143 17 C 0.227 3.773 18 H 0.107 0.893 19 N -0.726 5.726 20 C 0.707 3.293 21 N -0.870 5.870 22 O -0.587 6.587 23 C -0.094 4.094 24 C -0.068 4.068 25 C -0.132 4.132 26 C -0.115 4.115 27 C -0.132 4.132 28 C -0.071 4.071 29 C -0.116 4.116 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.029 0.971 33 H 0.107 0.893 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.402 0.598 39 H 0.395 0.605 40 H 0.411 0.589 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 8.676 10.186 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.273 6.273 14 C 0.302 3.698 15 O -0.413 6.413 16 C -0.182 4.182 17 C 0.121 3.879 18 H 0.124 0.876 19 N -0.381 5.381 20 C 0.405 3.595 21 N -0.438 5.438 22 O -0.465 6.465 23 C -0.096 4.096 24 C -0.086 4.086 25 C -0.150 4.150 26 C -0.133 4.133 27 C -0.150 4.150 28 C -0.072 4.072 29 C -0.172 4.172 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.140 0.860 38 H 0.236 0.764 39 H 0.222 0.778 40 H 0.243 0.757 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.619 8.720 10.511 20.748 hybrid contribution 0.322 -0.552 -0.723 0.965 sum -15.297 8.168 9.788 19.912 Atomic orbital electron populations 1.21817 0.98434 0.98714 1.00601 1.22000 0.92633 0.99494 1.03210 1.20623 0.94914 0.88696 0.78758 0.93589 1.21111 0.89853 1.38699 1.06138 0.91326 1.24882 0.99200 0.94790 0.95100 1.69900 1.35240 1.38050 1.09471 0.86248 0.84003 0.77874 0.78204 1.19461 1.20741 1.20779 1.86482 1.34402 1.62411 1.43980 1.23135 0.80631 0.76832 0.89219 1.90541 1.55537 1.59172 1.36077 1.21994 0.97015 1.02266 0.96875 1.19283 0.85711 0.86926 0.95972 0.87552 1.44955 1.45794 1.32312 1.14998 1.16002 0.80312 0.79234 0.83919 1.43003 1.40151 1.39039 1.21605 1.90920 1.54921 1.74117 1.26579 1.19761 0.97104 0.97263 0.95428 1.21154 0.99118 0.96670 0.91676 1.21117 0.98043 0.97261 0.98625 1.21093 0.96246 0.98537 0.97455 1.20894 1.00564 1.00734 0.92802 1.19684 0.95833 0.95903 0.95769 1.20824 1.00056 1.01909 0.94434 0.94869 0.92973 0.95157 0.87465 0.94139 0.92517 0.87547 0.86013 0.76396 0.77800 0.75712 0.85310 0.86314 0.86553 0.86522 0.91367 0.91780 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.56 37.16 0.32 -2.67 16 2 C -0.14 -3.38 5.49 -26.74 -0.15 -3.53 16 3 C 0.22 5.89 2.25 -27.88 -0.06 5.83 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -14.61 8.90 -34.44 -0.31 -14.91 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.00 11.29 55.43 0.63 -24.37 16 9 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 O -0.36 -8.52 9.81 -39.26 -0.38 -8.91 16 14 C 0.46 9.21 6.28 36.00 0.23 9.43 16 15 O -0.52 -10.86 12.50 -18.76 -0.23 -11.10 16 16 C -0.14 -2.23 3.94 -27.88 -0.11 -2.34 16 17 C 0.23 2.98 1.68 -69.08 -0.12 2.86 16 18 H 0.11 1.33 6.51 -51.93 -0.34 1.00 16 19 N -0.73 -8.93 4.26 -59.81 -0.25 -9.19 16 20 C 0.71 9.54 8.23 -86.92 -0.72 8.83 16 21 N -0.87 -8.36 8.88 27.63 0.25 -8.11 16 22 O -0.59 -9.80 13.24 5.29 0.07 -9.73 16 23 C -0.09 -1.20 4.37 -104.63 -0.46 -1.65 16 24 C -0.07 -0.89 7.47 -39.58 -0.30 -1.18 16 25 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 27 C -0.13 -1.39 9.70 -39.58 -0.38 -1.78 16 28 C -0.07 -0.80 5.88 -104.63 -0.62 -1.42 16 29 C -0.12 -1.03 9.48 36.00 0.34 -0.69 16 30 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 31 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.11 1.47 7.89 -51.93 -0.41 1.06 16 37 H 0.12 2.03 5.34 -51.93 -0.28 1.76 16 38 H 0.40 4.30 8.85 -40.82 -0.36 3.94 16 39 H 0.39 2.73 8.85 -40.82 -0.36 2.37 16 40 H 0.41 3.55 8.93 -40.82 -0.36 3.18 16 41 H 0.13 1.74 6.01 -52.49 -0.32 1.42 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 47 H 0.07 0.62 6.25 -51.93 -0.32 0.30 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -32.87 376.85 -9.14 -42.02 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.65 Total: 12.81 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.21 Total: -5.16 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.62 Total: -41.67 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.55 Total: -29.74 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.87 -9.14 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187959406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.906 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds