Wall clock time and date at job start Tue Mar 31 2020 18:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08993 * 109.47232 * 304.99861 * 3 2 1 5 5 C 1.50701 * 109.47362 * 184.99936 * 3 2 1 6 6 H 1.08001 * 120.00120 * 240.00783 * 5 3 2 7 7 C 1.37878 * 119.99995 * 59.99720 * 5 3 2 8 8 N 1.31515 * 119.99935 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00088 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47099 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47383 * 120.00105 * 9 7 5 12 12 H 1.48502 * 109.46853 * 240.00044 * 9 7 5 13 13 O 1.45200 * 109.46973 * 65.00021 * 3 2 1 14 14 C 1.34230 * 117.00215 * 269.99582 * 13 3 2 15 15 O 1.20834 * 119.99681 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00278 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47256 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.46950 * 305.00401 * 17 16 14 19 19 N 1.46498 * 109.46957 * 64.99893 * 17 16 14 20 20 C 1.34774 * 119.99910 * 64.95318 * 19 17 16 21 21 N 1.34781 * 120.00048 * 174.90635 * 20 19 17 22 22 O 1.21587 * 120.00302 * 354.90083 * 20 19 17 23 23 C 1.50694 * 109.47244 * 185.00366 * 17 16 14 24 24 C 1.38254 * 120.00003 * 345.71581 * 23 17 16 25 25 C 1.38217 * 120.00172 * 180.02562 * 24 23 17 26 26 C 1.38262 * 119.99862 * 359.97438 * 25 24 23 27 27 C 1.38214 * 119.99817 * 359.95694 * 26 25 24 28 28 C 1.38221 * 120.00004 * 165.44857 * 23 17 16 29 29 C 1.50690 * 119.99728 * 359.97438 * 28 23 17 30 30 H 1.09000 * 109.47689 * 300.00000 * 1 2 3 31 31 H 1.09000 * 109.47412 * 60.00231 * 1 2 3 32 32 H 1.09000 * 109.47450 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47228 * 239.99757 * 2 1 3 34 34 H 1.08999 * 109.47013 * 120.00124 * 2 1 3 35 35 H 0.97000 * 119.99966 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47154 * 60.00726 * 16 14 13 37 37 H 1.08998 * 109.47422 * 300.00416 * 16 14 13 38 38 H 0.96996 * 120.00081 * 244.94788 * 19 17 16 39 39 H 0.96996 * 119.99832 * 359.97438 * 21 20 19 40 40 H 0.96993 * 119.99809 * 179.72016 * 21 20 19 41 41 H 1.07998 * 120.00287 * 359.97438 * 24 23 17 42 42 H 1.07997 * 120.00088 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.99819 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99870 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47647 * 90.00218 * 29 28 23 46 46 H 1.09006 * 109.47161 * 209.99920 * 29 28 23 47 47 H 1.08998 * 109.47397 * 330.00035 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5987 1.5453 -0.1936 11 1 6.4963 -0.5190 -1.4626 12 1 6.3999 1.6157 -2.6092 13 8 1.6558 2.0916 1.2407 14 6 0.4727 2.7254 1.2560 15 8 -0.2193 2.7370 0.2655 16 6 0.0069 3.4215 2.5087 17 6 -1.3618 4.0584 2.2595 18 1 -1.3038 4.7165 1.3924 19 7 -2.3512 3.0073 2.0094 20 6 -2.6662 2.1325 2.9851 21 7 -3.6489 1.2309 2.7903 22 8 -2.0638 2.1566 4.0410 23 6 -1.7722 4.8570 3.4697 24 6 -1.1030 4.6895 4.6679 25 6 -1.4797 5.4216 5.7781 26 6 -2.5254 6.3219 5.6902 27 6 -3.1934 6.4903 4.4920 28 6 -2.8139 5.7610 3.3805 29 6 -3.5390 5.9484 2.0728 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0604 -2.9502 36 1 0.7238 4.1958 2.7822 37 1 -0.0721 2.6969 3.3191 38 1 -2.7796 2.9411 1.1417 39 1 -4.1296 1.2119 1.9480 40 1 -3.8728 0.5987 3.4909 41 1 -0.2865 3.9860 4.7366 42 1 -0.9573 5.2905 6.7141 43 1 -2.8200 6.8936 6.5578 44 1 -4.0099 7.1938 4.4233 45 1 -4.3777 5.2543 2.0196 46 1 -3.9092 6.9714 2.0059 47 1 -2.8545 5.7549 1.2469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187959406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:04 Heat of formation + Delta-G solvation = -123.953948 kcal Electronic energy + Delta-G solvation = -30093.211632 eV Core-core repulsion = 26046.808763 eV Total energy + Delta-G solvation = -4046.402870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88181 -40.87016 -39.83019 -37.75934 -36.14944 -35.48378 -34.70924 -33.61878 -33.35365 -32.22750 -30.64081 -29.22787 -27.73689 -26.09734 -25.08761 -23.19014 -22.71186 -22.08099 -21.26186 -20.66972 -19.51765 -18.81517 -18.53281 -18.25660 -17.37509 -17.12001 -16.86359 -16.44434 -16.01777 -16.01063 -15.85324 -15.41854 -15.16041 -14.82942 -14.77426 -14.39770 -14.07825 -13.94855 -13.82869 -13.46101 -13.31970 -13.15667 -13.14458 -13.01778 -12.82107 -12.79534 -12.68699 -12.53282 -12.14278 -11.86343 -11.75361 -11.69758 -11.42064 -11.22789 -11.07920 -10.80235 -10.55487 -10.51874 -10.01006 -9.57712 -9.44111 -8.27897 -6.43861 0.44733 0.59840 1.40757 1.41023 1.46034 1.55000 2.04623 2.12084 2.30043 2.42967 2.96551 3.01586 3.62057 3.71923 3.81189 4.02309 4.11027 4.11516 4.28351 4.34443 4.37978 4.40110 4.46267 4.52657 4.60642 4.70402 4.80006 4.86488 4.86836 4.94201 5.01139 5.08746 5.21062 5.22575 5.37288 5.39686 5.52473 5.53737 5.64664 5.67811 5.70989 5.78475 5.97985 5.99880 6.11340 6.18024 6.20862 6.61230 7.05710 7.16409 7.28948 7.76983 8.78806 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.003158 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.160060 B = 8865.028837 C = 9531.324847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.130 4.130 3 C 0.228 3.772 4 H 0.013 0.987 5 C -0.552 4.552 6 H 0.061 0.939 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.978 3.022 10 H -0.267 1.267 11 H -0.272 1.272 12 H -0.274 1.274 13 O -0.373 6.373 14 C 0.453 3.547 15 O -0.529 6.529 16 C -0.130 4.130 17 C 0.232 3.768 18 H 0.113 0.887 19 N -0.720 5.720 20 C 0.698 3.302 21 N -0.854 5.854 22 O -0.622 6.622 23 C -0.106 4.106 24 C -0.088 4.088 25 C -0.145 4.145 26 C -0.116 4.116 27 C -0.136 4.136 28 C -0.078 4.078 29 C -0.114 4.114 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.035 0.965 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.410 0.590 39 H 0.409 0.591 40 H 0.418 0.582 41 H 0.115 0.885 42 H 0.130 0.870 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 9.481 10.556 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.030 0.970 5 C -0.589 4.589 6 H 0.079 0.921 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.197 1.197 12 H -0.199 1.199 13 O -0.290 6.290 14 C 0.297 3.703 15 O -0.420 6.420 16 C -0.168 4.168 17 C 0.126 3.874 18 H 0.131 0.869 19 N -0.376 5.376 20 C 0.396 3.604 21 N -0.423 5.423 22 O -0.503 6.503 23 C -0.107 4.107 24 C -0.107 4.107 25 C -0.163 4.163 26 C -0.135 4.135 27 C -0.153 4.153 28 C -0.078 4.078 29 C -0.170 4.170 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.245 0.755 39 H 0.239 0.761 40 H 0.250 0.750 41 H 0.133 0.867 42 H 0.148 0.852 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.750 9.516 10.855 22.112 hybrid contribution 0.574 -0.773 -0.821 1.266 sum -16.175 8.743 10.034 20.947 Atomic orbital electron populations 1.21628 0.95861 1.00240 1.00138 1.21855 0.94881 0.98273 1.01817 1.20304 0.94279 0.89161 0.78747 0.96954 1.21383 0.90897 1.39885 1.06758 0.92084 1.25750 1.04041 0.93885 0.94395 1.70003 1.37216 1.37971 1.09803 0.85211 0.78007 0.78295 0.78362 1.19085 1.19743 1.19908 1.86477 1.36568 1.63245 1.42681 1.23983 0.79381 0.76283 0.90617 1.90522 1.55345 1.59247 1.36840 1.22050 0.98942 1.01979 0.93867 1.19222 0.84395 0.86996 0.96754 0.86931 1.44882 1.45470 1.32003 1.15202 1.16247 0.80759 0.79762 0.83602 1.42842 1.38989 1.37975 1.22501 1.90902 1.56291 1.75127 1.27949 1.19708 0.98109 0.98041 0.94842 1.21175 0.99487 0.97316 0.92704 1.21338 0.98742 0.97506 0.98708 1.21430 0.95472 0.98036 0.98513 1.21247 1.00959 1.00718 0.92412 1.19966 0.95381 0.95326 0.97135 1.20851 0.99946 1.03151 0.93046 0.94690 0.93873 0.92593 0.89588 0.94575 0.92048 0.86101 0.86896 0.75452 0.76065 0.74985 0.86719 0.85176 0.84070 0.84051 0.90661 0.90122 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.56 71.98 0.62 -4.60 16 2 C -0.13 -6.63 5.49 30.59 0.17 -6.46 16 3 C 0.23 12.47 2.25 29.85 0.07 12.53 16 4 H 0.01 0.76 7.16 -2.39 -0.02 0.75 16 5 C -0.55 -31.77 8.90 25.60 0.23 -31.54 16 6 H 0.06 3.51 7.81 -2.91 -0.02 3.48 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -51.95 11.29 21.45 0.24 -51.70 16 9 Si 0.98 43.28 29.54 68.60 2.03 45.31 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 O -0.37 -18.34 9.81 -51.42 -0.50 -18.84 16 14 C 0.45 18.51 6.28 71.23 0.45 18.96 16 15 O -0.53 -22.25 12.50 21.94 0.27 -21.97 16 16 C -0.13 -4.10 3.94 29.85 0.12 -3.99 16 17 C 0.23 6.02 1.68 44.25 0.07 6.09 16 18 H 0.11 2.75 6.51 -2.39 -0.02 2.74 16 19 N -0.72 -17.20 4.26 -461.41 -1.96 -19.16 16 20 C 0.70 18.36 8.23 179.05 1.47 19.83 16 21 N -0.85 -15.25 8.88 -184.74 -1.64 -16.89 16 22 O -0.62 -20.78 13.24 -3.99 -0.05 -20.83 16 23 C -0.11 -2.62 4.37 -19.87 -0.09 -2.71 16 24 C -0.09 -2.32 7.47 22.27 0.17 -2.15 16 25 C -0.14 -3.27 10.05 22.27 0.22 -3.05 16 26 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 27 C -0.14 -2.53 9.70 22.27 0.22 -2.32 16 28 C -0.08 -1.61 5.88 -19.87 -0.12 -1.73 16 29 C -0.11 -1.76 9.48 71.23 0.68 -1.09 16 30 H 0.03 1.46 6.06 -2.39 -0.01 1.45 16 31 H 0.04 1.91 7.80 -2.39 -0.02 1.89 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 4.76 5.95 -2.39 -0.01 4.74 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.12 3.41 7.89 -2.38 -0.02 3.40 16 37 H 0.11 3.88 5.34 -2.39 -0.01 3.86 16 38 H 0.41 8.31 8.85 -92.71 -0.82 7.49 16 39 H 0.41 4.91 8.85 -92.71 -0.82 4.09 16 40 H 0.42 6.64 8.93 -92.71 -0.83 5.82 16 41 H 0.11 3.22 6.01 -2.91 -0.02 3.21 16 42 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 43 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 0.98 8.09 -2.38 -0.02 0.96 16 47 H 0.07 1.08 6.25 -2.39 -0.01 1.07 16 Total: -1.00 -71.77 376.85 1.89 -69.88 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -1.43 Total: 36.91 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.94 Total: -2.71 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -3.36 Total: -87.75 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -0.28 Total: -61.65 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -71.77 1.89 -69.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187959406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.071 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds