Wall clock time and date at job start Tue Mar 31 2020 18:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 H 1.08998 * 109.47414 * 304.99335 * 3 2 1 5 5 C 1.50708 * 109.46753 * 184.99611 * 3 2 1 6 6 H 1.08003 * 119.99886 * 239.99952 * 5 3 2 7 7 C 1.37872 * 119.99814 * 60.00003 * 5 3 2 8 8 N 1.31515 * 119.99980 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00510 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47312 * 270.00119 * 9 7 5 11 11 H 1.48510 * 109.46680 * 29.99911 * 9 7 5 12 12 H 1.48497 * 109.47514 * 149.99698 * 9 7 5 13 13 N 1.46500 * 109.47228 * 65.00132 * 3 2 1 14 14 C 1.34781 * 119.99493 * 274.99722 * 13 3 2 15 15 O 1.21361 * 119.99982 * 0.02562 * 14 13 3 16 16 C 1.49353 * 120.00019 * 179.97438 * 14 13 3 17 17 O 1.21375 * 119.99548 * 0.02562 * 16 14 13 18 18 N 1.34770 * 120.00247 * 179.97438 * 16 14 13 19 19 C 1.39718 * 120.00285 * 174.47919 * 18 16 14 20 20 C 1.38988 * 120.05008 * 335.14442 * 19 18 16 21 21 C 1.38099 * 120.03810 * 179.97438 * 20 19 18 22 22 C 1.38219 * 120.13296 * 0.03655 * 21 20 19 23 23 C 1.50696 * 119.95638 * 179.97438 * 22 21 20 24 24 C 1.38780 * 120.09282 * 359.96066 * 22 21 20 25 25 O 1.35900 * 120.01686 * 180.02562 * 24 22 21 26 26 C 1.42898 * 117.00120 * 90.00284 * 25 24 22 27 27 C 1.38606 * 119.96457 * 359.76916 * 24 22 21 28 28 C 1.50699 * 120.06691 * 180.27205 * 27 24 22 29 29 H 1.08998 * 109.47433 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47622 * 300.00737 * 1 2 3 31 31 H 1.09007 * 109.46924 * 60.00352 * 1 2 3 32 32 H 1.09000 * 109.47177 * 239.99817 * 2 1 3 33 33 H 1.09001 * 109.46717 * 120.00049 * 2 1 3 34 34 H 0.96997 * 120.00434 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00285 * 94.99635 * 13 3 2 36 36 H 0.97005 * 119.99870 * 354.48481 * 18 16 14 37 37 H 1.08007 * 119.97925 * 359.96991 * 20 19 18 38 38 H 1.08004 * 119.93609 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.47231 * 90.00717 * 23 22 21 40 40 H 1.08997 * 109.47452 * 210.00290 * 23 22 21 41 41 H 1.09000 * 109.47495 * 330.00435 * 23 22 21 42 42 H 1.09006 * 109.46737 * 299.99661 * 26 25 24 43 43 H 1.08991 * 109.47342 * 59.99733 * 26 25 24 44 44 H 1.09000 * 109.46815 * 179.97438 * 26 25 24 45 45 H 1.09005 * 109.47331 * 270.23189 * 28 27 24 46 46 H 1.09009 * 109.47102 * 30.23054 * 28 27 24 47 47 H 1.09002 * 109.47549 * 150.22824 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 5.4540 0.8802 -1.3361 9 14 3.0966 0.1087 -2.5699 10 1 2.8757 -1.3274 -2.2632 11 1 1.7878 0.8072 -2.6386 12 1 3.7939 0.2346 -3.8750 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3401 2.6319 0.4337 16 6 0.0397 3.3317 2.6432 17 8 0.8148 3.3638 3.5766 18 7 -1.1774 3.8990 2.7581 19 6 -1.5917 4.4210 3.9861 20 6 -1.0442 3.9372 5.1684 21 6 -1.4536 4.4537 6.3820 22 6 -2.4087 5.4519 6.4246 23 6 -2.8529 6.0122 7.7511 24 6 -2.9590 5.9391 5.2474 25 8 -3.8976 6.9209 5.2910 26 6 -3.4279 8.2698 5.2470 27 6 -2.5469 5.4275 4.0269 28 6 -3.1385 5.9591 2.7469 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8771 0.4824 -2.1130 35 1 2.2719 2.1231 1.9978 36 1 -1.7657 3.9449 1.9882 37 1 -0.2982 3.1568 5.1380 38 1 -1.0267 4.0768 7.2997 39 1 -2.2196 6.8582 8.0186 40 1 -3.8888 6.3431 7.6772 41 1 -2.7715 5.2409 8.5170 42 1 -2.7717 8.4539 6.0977 43 1 -2.8767 8.4326 4.3210 44 1 -4.2773 8.9517 5.2885 45 1 -4.0247 5.3796 2.4879 46 1 -3.4148 7.0050 2.8811 47 1 -2.4040 5.8774 1.9456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188804953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:23 Heat of formation + Delta-G solvation = -77.168390 kcal Electronic energy + Delta-G solvation = -28977.402002 eV Core-core repulsion = 24933.027906 eV Total energy + Delta-G solvation = -4044.374096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.21950 -40.10719 -38.72296 -37.34673 -35.81223 -35.16999 -32.79996 -32.41574 -31.62872 -31.19541 -28.33338 -27.87920 -26.89887 -26.32475 -24.41783 -22.81009 -22.34559 -21.12074 -20.47863 -19.81456 -18.92733 -18.14205 -16.98803 -16.44994 -16.22226 -16.03501 -15.93499 -15.68076 -15.24933 -14.96016 -14.50444 -14.37799 -13.94237 -13.76752 -13.63620 -13.55448 -13.39162 -13.10687 -12.95512 -12.48278 -12.39004 -12.25018 -12.12290 -12.01721 -11.90803 -11.87755 -11.52695 -11.22306 -11.14979 -10.91896 -10.72861 -10.44359 -10.26530 -10.02720 -9.64146 -9.35538 -9.22217 -8.85683 -8.75176 -8.33511 -8.10404 -6.27546 -4.31749 0.87329 1.01812 1.74419 2.46049 3.17298 3.18530 3.30142 3.32617 3.48479 3.72320 3.93071 4.24130 4.50529 4.63652 4.77341 4.86362 4.93516 4.96884 5.04642 5.05837 5.18174 5.24392 5.29799 5.32684 5.37731 5.43120 5.56487 5.74074 5.83408 5.87163 5.91108 6.03161 6.04489 6.08004 6.21416 6.35128 6.50052 6.56483 6.60962 6.66254 6.77958 6.92299 7.07127 7.13861 7.27066 7.34211 7.65084 7.97779 8.33616 8.46281 8.72856 9.30666 10.84277 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024932 B = 0.002472 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.765791 B =11325.469573 C =11626.883347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.540 4.540 6 H 0.083 0.917 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.260 1.260 12 H -0.293 1.293 13 N -0.659 5.659 14 C 0.497 3.503 15 O -0.530 6.530 16 C 0.507 3.493 17 O -0.498 6.498 18 N -0.645 5.645 19 C 0.158 3.842 20 C -0.127 4.127 21 C -0.091 4.091 22 C -0.120 4.120 23 C -0.108 4.108 24 C 0.109 3.891 25 O -0.331 6.331 26 C 0.034 3.966 27 C -0.128 4.128 28 C -0.113 4.113 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.269 0.731 35 H 0.408 0.592 36 H 0.423 0.577 37 H 0.150 0.850 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.016 10.541 14.043 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.578 4.578 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.184 1.184 12 H -0.220 1.220 13 N -0.308 5.308 14 C 0.275 3.725 15 O -0.408 6.408 16 C 0.290 3.710 17 O -0.371 6.371 18 N -0.291 5.291 19 C 0.063 3.937 20 C -0.147 4.147 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.165 4.165 24 C 0.065 3.935 25 O -0.248 6.248 26 C -0.061 4.061 27 C -0.131 4.131 28 C -0.169 4.169 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.262 0.738 37 H 0.168 0.832 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.954 10.407 13.855 24.952 hybrid contribution -0.102 -0.379 -0.801 0.892 sum -18.056 10.029 13.054 24.434 Atomic orbital electron populations 1.21893 0.96881 0.99463 1.02048 1.22318 0.94396 0.99552 1.01661 1.19371 0.96244 0.88723 0.81851 0.92736 1.21000 0.88175 1.40373 1.08206 0.89862 1.24818 0.94903 0.95034 0.97601 1.69857 1.08680 1.44067 1.29791 0.86914 0.80916 0.80027 0.80966 1.20096 1.18418 1.22009 1.46105 1.13551 1.52452 1.18696 1.19610 0.84329 0.81355 0.87172 1.90746 1.51179 1.59510 1.39382 1.20863 0.81438 0.79014 0.89654 1.90715 1.50372 1.55940 1.40096 1.43233 1.17390 1.56678 1.11838 1.17426 0.96533 0.94391 0.85359 1.21469 1.01555 1.01333 0.90344 1.20825 0.96221 0.96146 0.97795 1.20153 0.97586 0.99208 0.95182 1.20656 1.01856 1.00802 0.93166 1.17934 0.92386 0.92368 0.90836 1.85994 1.30973 1.13794 1.94048 1.22990 1.00893 0.81311 1.00864 1.19834 0.99654 0.97686 0.95904 1.20664 1.00827 1.01835 0.93612 0.94547 0.93291 0.92652 0.92292 0.91886 0.92119 0.75590 0.73827 0.83210 0.85119 0.91614 0.91043 0.91447 0.93490 0.93440 0.88839 0.90592 0.90934 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.51 37.16 0.32 -2.42 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.12 16 3 C 0.24 5.48 1.83 -69.08 -0.13 5.35 16 4 H 0.05 1.34 6.64 -51.93 -0.34 0.99 16 5 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 6 H 0.08 2.34 7.98 -52.48 -0.42 1.92 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -25.82 13.96 55.43 0.77 -25.04 16 9 Si 0.88 20.95 24.41 -169.99 -4.15 16.80 16 10 H -0.27 -6.31 6.83 56.52 0.39 -5.92 16 11 H -0.26 -6.01 6.53 56.52 0.37 -5.65 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.66 -12.96 5.01 -55.39 -0.28 -13.24 16 14 C 0.50 8.96 6.46 -11.63 -0.08 8.89 16 15 O -0.53 -10.21 13.62 5.49 0.07 -10.13 16 16 C 0.51 8.02 7.69 -11.63 -0.09 7.93 16 17 O -0.50 -8.47 13.64 5.48 0.07 -8.39 16 18 N -0.65 -8.56 4.95 -10.31 -0.05 -8.62 16 19 C 0.16 2.04 6.41 -83.77 -0.54 1.50 16 20 C -0.13 -1.64 8.71 -39.35 -0.34 -1.98 16 21 C -0.09 -0.99 9.69 -39.64 -0.38 -1.37 16 22 C -0.12 -1.26 5.90 -104.43 -0.62 -1.87 16 23 C -0.11 -0.84 9.79 36.00 0.35 -0.49 16 24 C 0.11 1.21 5.66 -39.24 -0.22 0.99 16 25 O -0.33 -3.33 8.68 -19.43 -0.17 -3.49 16 26 C 0.03 0.24 10.76 101.05 1.09 1.32 16 27 C -0.13 -1.47 5.91 -104.27 -0.62 -2.09 16 28 C -0.11 -1.06 9.22 36.00 0.33 -0.73 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.90 5.64 -51.93 -0.29 0.60 16 31 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 32 H 0.06 1.31 3.21 -51.93 -0.17 1.15 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.41 7.67 8.01 -40.82 -0.33 7.34 16 36 H 0.42 5.01 6.89 -40.82 -0.28 4.73 16 37 H 0.15 2.09 5.79 -52.48 -0.30 1.79 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.56 7.53 -51.93 -0.39 0.17 16 41 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 42 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 0.33 7.23 -51.93 -0.38 -0.05 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.62 6.30 -51.92 -0.33 0.29 16 47 H 0.07 0.62 6.99 -51.93 -0.36 0.26 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -30.24 374.48 -6.12 -36.35 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.56 Total: 10.66 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.48 Total: -0.54 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.44 Total: -46.90 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.02 Total: -22.02 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.15 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.24 -6.12 -36.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188804953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.815 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds