Wall clock time and date at job start Tue Mar 31 2020 18:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 H 1.08998 * 109.47414 * 304.99335 * 3 2 1 5 5 C 1.50708 * 109.46753 * 184.99611 * 3 2 1 6 6 H 1.08003 * 119.99886 * 239.99952 * 5 3 2 7 7 C 1.37872 * 119.99814 * 60.00003 * 5 3 2 8 8 N 1.31515 * 119.99980 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00510 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47312 * 270.00119 * 9 7 5 11 11 H 1.48510 * 109.46680 * 29.99911 * 9 7 5 12 12 H 1.48497 * 109.47514 * 149.99698 * 9 7 5 13 13 N 1.46500 * 109.47228 * 65.00132 * 3 2 1 14 14 C 1.34781 * 119.99493 * 274.99722 * 13 3 2 15 15 O 1.21361 * 119.99982 * 0.02562 * 14 13 3 16 16 C 1.49353 * 120.00019 * 179.97438 * 14 13 3 17 17 O 1.21375 * 119.99548 * 0.02562 * 16 14 13 18 18 N 1.34770 * 120.00247 * 179.97438 * 16 14 13 19 19 C 1.39718 * 120.00285 * 174.47919 * 18 16 14 20 20 C 1.38988 * 120.05008 * 335.14442 * 19 18 16 21 21 C 1.38099 * 120.03810 * 179.97438 * 20 19 18 22 22 C 1.38219 * 120.13296 * 0.03655 * 21 20 19 23 23 C 1.50696 * 119.95638 * 179.97438 * 22 21 20 24 24 C 1.38780 * 120.09282 * 359.96066 * 22 21 20 25 25 O 1.35900 * 120.01686 * 180.02562 * 24 22 21 26 26 C 1.42898 * 117.00120 * 90.00284 * 25 24 22 27 27 C 1.38606 * 119.96457 * 359.76916 * 24 22 21 28 28 C 1.50699 * 120.06691 * 180.27205 * 27 24 22 29 29 H 1.08998 * 109.47433 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47622 * 300.00737 * 1 2 3 31 31 H 1.09007 * 109.46924 * 60.00352 * 1 2 3 32 32 H 1.09000 * 109.47177 * 239.99817 * 2 1 3 33 33 H 1.09001 * 109.46717 * 120.00049 * 2 1 3 34 34 H 0.96997 * 120.00434 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00285 * 94.99635 * 13 3 2 36 36 H 0.97005 * 119.99870 * 354.48481 * 18 16 14 37 37 H 1.08007 * 119.97925 * 359.96991 * 20 19 18 38 38 H 1.08004 * 119.93609 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.47231 * 90.00717 * 23 22 21 40 40 H 1.08997 * 109.47452 * 210.00290 * 23 22 21 41 41 H 1.09000 * 109.47495 * 330.00435 * 23 22 21 42 42 H 1.09006 * 109.46737 * 299.99661 * 26 25 24 43 43 H 1.08991 * 109.47342 * 59.99733 * 26 25 24 44 44 H 1.09000 * 109.46815 * 179.97438 * 26 25 24 45 45 H 1.09005 * 109.47331 * 270.23189 * 28 27 24 46 46 H 1.09009 * 109.47102 * 30.23054 * 28 27 24 47 47 H 1.09002 * 109.47549 * 150.22824 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 5.4540 0.8802 -1.3361 9 14 3.0966 0.1087 -2.5699 10 1 2.8757 -1.3274 -2.2632 11 1 1.7878 0.8072 -2.6386 12 1 3.7939 0.2346 -3.8750 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3401 2.6319 0.4337 16 6 0.0397 3.3317 2.6432 17 8 0.8148 3.3638 3.5766 18 7 -1.1774 3.8990 2.7581 19 6 -1.5917 4.4210 3.9861 20 6 -1.0442 3.9372 5.1684 21 6 -1.4536 4.4537 6.3820 22 6 -2.4087 5.4519 6.4246 23 6 -2.8529 6.0122 7.7511 24 6 -2.9590 5.9391 5.2474 25 8 -3.8976 6.9209 5.2910 26 6 -3.4279 8.2698 5.2470 27 6 -2.5469 5.4275 4.0269 28 6 -3.1385 5.9591 2.7469 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8771 0.4824 -2.1130 35 1 2.2719 2.1231 1.9978 36 1 -1.7657 3.9449 1.9882 37 1 -0.2982 3.1568 5.1380 38 1 -1.0267 4.0768 7.2997 39 1 -2.2196 6.8582 8.0186 40 1 -3.8888 6.3431 7.6772 41 1 -2.7715 5.2409 8.5170 42 1 -2.7717 8.4539 6.0977 43 1 -2.8767 8.4326 4.3210 44 1 -4.2773 8.9517 5.2885 45 1 -4.0247 5.3796 2.4879 46 1 -3.4148 7.0050 2.8811 47 1 -2.4040 5.8774 1.9456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188804953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:22 Heat of formation + Delta-G solvation = -97.592252 kcal Electronic energy + Delta-G solvation = -28978.287647 eV Core-core repulsion = 24933.027906 eV Total energy + Delta-G solvation = -4045.259741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35368 -41.18136 -40.01897 -38.28831 -37.39031 -36.26854 -34.46528 -33.63031 -33.26122 -32.02311 -29.66381 -28.98354 -27.92691 -27.03900 -25.71610 -24.46470 -23.42686 -22.27393 -21.66274 -21.30611 -20.26507 -19.16537 -18.60299 -17.70513 -17.57712 -17.38970 -16.94658 -16.74923 -16.40212 -16.18176 -15.86115 -15.60310 -15.18777 -14.95569 -14.76827 -14.52844 -14.42272 -14.11856 -14.04926 -13.81660 -13.73803 -13.68953 -13.10559 -13.02185 -12.96160 -12.92356 -12.81267 -12.67699 -12.50987 -12.37857 -12.02342 -11.86940 -11.44083 -11.36965 -11.30420 -10.97991 -10.89370 -10.62216 -10.01218 -9.60765 -9.04100 -8.39069 -6.47122 -0.17321 0.16340 0.55596 1.19687 1.29268 1.36857 1.46116 2.03890 2.25540 2.42603 2.58876 2.95818 2.96949 3.36278 3.72210 3.85719 3.98629 4.19618 4.22903 4.28761 4.31311 4.39534 4.40009 4.48970 4.51593 4.60149 4.67608 4.74594 4.76854 4.78761 4.83380 4.97903 4.98851 5.06431 5.11602 5.15248 5.20006 5.26327 5.30954 5.32513 5.44729 5.48249 5.52386 5.69700 5.86971 6.08321 6.43686 6.51807 6.55084 6.67539 6.93875 7.20529 8.76221 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024932 B = 0.002472 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.765791 B =11325.469573 C =11626.883347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.248 3.752 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.939 3.061 10 H -0.258 1.258 11 H -0.250 1.250 12 H -0.294 1.294 13 N -0.666 5.666 14 C 0.501 3.499 15 O -0.539 6.539 16 C 0.515 3.485 17 O -0.513 6.513 18 N -0.629 5.629 19 C 0.135 3.865 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.119 4.119 23 C -0.106 4.106 24 C 0.102 3.898 25 O -0.340 6.340 26 C 0.027 3.973 27 C -0.130 4.130 28 C -0.112 4.112 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.271 0.729 35 H 0.411 0.589 36 H 0.429 0.571 37 H 0.135 0.865 38 H 0.152 0.848 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.694 11.051 14.897 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.184 1.184 11 H -0.174 1.174 12 H -0.221 1.221 13 N -0.315 5.315 14 C 0.281 3.719 15 O -0.418 6.418 16 C 0.297 3.703 17 O -0.388 6.388 18 N -0.276 5.276 19 C 0.041 3.959 20 C -0.163 4.163 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.162 4.162 24 C 0.058 3.942 25 O -0.257 6.257 26 C -0.066 4.066 27 C -0.133 4.133 28 C -0.169 4.169 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.269 0.731 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.135 0.865 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.684 10.941 14.734 27.652 hybrid contribution 0.678 -0.382 -0.928 1.212 sum -20.006 10.559 13.806 26.502 Atomic orbital electron populations 1.21801 0.94751 1.01135 1.01748 1.22244 0.96248 0.97874 1.01506 1.19047 0.93665 0.90088 0.82732 0.94250 1.21228 0.90153 1.39266 1.07227 0.92965 1.25599 0.95849 0.95672 0.99933 1.69982 1.10512 1.45786 1.30884 0.85993 0.79523 0.80024 0.77918 1.18399 1.17445 1.22112 1.45931 1.14530 1.53202 1.17868 1.19884 0.83451 0.80632 0.87899 1.90733 1.51306 1.59637 1.40077 1.20281 0.82215 0.79433 0.88372 1.90722 1.51057 1.56918 1.40134 1.43051 1.16357 1.55655 1.12503 1.17550 0.97843 0.95680 0.84860 1.21477 1.01811 1.01627 0.91362 1.21054 0.96236 0.96022 0.97837 1.20500 0.96757 0.98477 0.96316 1.20709 1.02015 1.01561 0.91960 1.18107 0.92372 0.92782 0.90914 1.85977 1.30920 1.14695 1.94061 1.23213 1.02176 0.80074 1.01152 1.20040 0.99083 0.97082 0.97087 1.20715 1.01042 1.02504 0.92636 0.91904 0.93126 0.93377 0.93079 0.91391 0.91944 0.75271 0.73063 0.84715 0.83071 0.90378 0.90918 0.90069 0.92890 0.93446 0.86534 0.89646 0.89949 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.51 71.98 0.61 -4.25 16 2 C -0.14 -5.77 5.11 30.59 0.16 -5.62 16 3 C 0.25 11.31 1.83 44.25 0.08 11.40 16 4 H 0.04 1.93 6.64 -2.39 -0.02 1.91 16 5 C -0.54 -29.22 9.31 25.60 0.24 -28.98 16 6 H 0.05 3.07 7.98 -2.91 -0.02 3.05 16 7 C 0.03 1.64 5.45 84.65 0.46 2.10 16 8 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16 9 Si 0.94 43.05 24.41 68.60 1.67 44.73 16 10 H -0.26 -11.13 6.83 99.48 0.68 -10.45 16 11 H -0.25 -11.02 6.53 99.48 0.65 -10.37 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 N -0.67 -26.38 5.01 -447.51 -2.24 -28.63 16 14 C 0.50 17.95 6.46 87.24 0.56 18.52 16 15 O -0.54 -20.31 13.62 -3.28 -0.04 -20.36 16 16 C 0.51 16.18 7.69 87.24 0.67 16.85 16 17 O -0.51 -17.61 13.64 -3.32 -0.05 -17.66 16 18 N -0.63 -16.34 4.95 -304.89 -1.51 -17.85 16 19 C 0.13 3.39 6.41 38.20 0.24 3.63 16 20 C -0.14 -3.62 8.71 22.42 0.20 -3.42 16 21 C -0.09 -1.89 9.69 22.23 0.22 -1.67 16 22 C -0.12 -2.26 5.90 -19.74 -0.12 -2.38 16 23 C -0.11 -1.37 9.79 71.23 0.70 -0.67 16 24 C 0.10 2.10 5.66 22.49 0.13 2.23 16 25 O -0.34 -6.05 8.68 -92.42 -0.80 -6.85 16 26 C 0.03 0.32 10.76 113.37 1.22 1.54 16 27 C -0.13 -2.83 5.91 -19.64 -0.12 -2.95 16 28 C -0.11 -1.93 9.22 71.24 0.66 -1.28 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.76 5.64 -2.39 -0.01 1.74 16 31 H 0.05 1.77 7.85 -2.38 -0.02 1.75 16 32 H 0.05 2.18 3.21 -2.39 -0.01 2.17 16 33 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.41 15.83 8.01 -92.71 -0.74 15.09 16 36 H 0.43 9.80 6.89 -92.70 -0.64 9.16 16 37 H 0.14 3.80 5.79 -2.91 -0.02 3.79 16 38 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.07 0.94 7.53 -2.39 -0.02 0.92 16 41 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 42 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.05 0.55 7.23 -2.39 -0.02 0.54 16 44 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.08 1.24 6.30 -2.38 -0.02 1.23 16 47 H 0.07 1.14 6.99 -2.39 -0.02 1.12 16 Total: -1.00 -65.31 374.48 2.80 -62.51 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.44 Total: 34.40 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.91 Total: 5.05 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.45 Total: -101.83 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.89 Total: -44.86 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.67 Total: 44.73 kcal Total: -65.31 2.80 -62.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188804953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.082 kcal (2) G-P(sol) polarization free energy of solvation -65.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds